RNA–Protein interactions for RNA: ENST00000561036.1

HDDC3-206, Transcript of HD domain containing 3, humanhuman

TSL 3

Gene HDDC3, Length 457 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-206ENST00000561036 BATFQ16520 125 aa11.75□□□□□ -0.53
HDDC3-206ENST00000561036 COL5A1-AS1Q5SY13 56 aa11.74□□□□□ -0.53
HDDC3-206ENST00000561036 IGHV3-64A0A075B6Q5 118 aa11.73□□□□□ -0.53
HDDC3-206ENST00000561036 TRAV8-3A0A0A6YYJ7 113 aa11.73□□□□□ -0.53
HDDC3-206ENST00000561036 SCGB1D4Q6XE38 83 aa11.73□□□□□ -0.53
HDDC3-206ENST00000561036 IGHV3OR16-9A0A0B4J2B5 98 aa11.72□□□□□ -0.53
HDDC3-206ENST00000561036 SMIM1B2RUZ4 78 aa11.72□□□□□ -0.53
HDDC3-206ENST00000561036 IGKV3OR2-268A0A0C4DH90 116 aa11.71□□□□□ -0.53
HDDC3-206ENST00000561036 ANGP03950 147 aaKnown RBP11.71□□□□□ -0.53
HDDC3-206ENST00000561036 ZFAND6Q6FIF0 208 aa11.71□□□□□ -0.53
HDDC3-206ENST00000561036 LINC01561Q8N1V8 128 aa11.71□□□□□ -0.53
HDDC3-206ENST00000561036 LINC00269Q8N2A0 174 aa11.71□□□□□ -0.53
HDDC3-206ENST00000561036 ORAOV1Q8WV07 137 aa11.71□□□□□ -0.53
HDDC3-206ENST00000561036 A0A087WZ39 114 aa11.7□□□□□ -0.54
HDDC3-206ENST00000561036 REG3AQ06141 175 aa11.7□□□□□ -0.54
HDDC3-206ENST00000561036 ESRGQ1W209 222 aa11.7□□□□□ -0.54
HDDC3-206ENST00000561036 TM2D2Q9BX73 214 aa11.7□□□□□ -0.54
HDDC3-206ENST00000561036 SPANXB1Q9NS25 103 aaPredicted RBP11.7□□□□□ -0.54
HDDC3-206ENST00000561036 NDUFA12Q9UI09 145 aa11.7□□□□□ -0.54
HDDC3-206ENST00000561036 TENM3Q9P273 2699 aa11.69□□□□□ -0.54
HDDC3-206ENST00000561036 HIST1H4GQ99525 98 aa11.69□□□□□ -0.54
HDDC3-206ENST00000561036 NDUFA1O15239 70 aa11.68□□□□□ -0.54
HDDC3-206ENST00000561036 CEND1Q8N111 149 aa11.68□□□□□ -0.54
HDDC3-206ENST00000561036 PRR34Q9NV39 138 aa11.68□□□□□ -0.54
HDDC3-206ENST00000561036 A6NDN8 102 aa11.67□□□□□ -0.54
HDDC3-206ENST00000561036 CD164L2Q6UWJ8 174 aa11.67□□□□□ -0.54
HDDC3-206ENST00000561036 A0A0J9YXY3 114 aa11.66□□□□□ -0.54
HDDC3-206ENST00000561036 GCSHP23434 173 aa11.66□□□□□ -0.54
HDDC3-206ENST00000561036 Q8N3U1 123 aa11.66□□□□□ -0.54
HDDC3-206ENST00000561036 C10orf126Q8N4M7 172 aa11.66□□□□□ -0.54
HDDC3-206ENST00000561036 TMEM238C9JI98 176 aa11.65□□□□□ -0.54
HDDC3-206ENST00000561036 TIMM17BO60830 172 aa11.65□□□□□ -0.54
HDDC3-206ENST00000561036 XCL1P47992 114 aa11.65□□□□□ -0.54
HDDC3-206ENST00000561036 SRSF9Q13242 221 aaKnown RBP eCLIP11.65□□□□□ -0.54
HDDC3-206ENST00000561036 CLPSL2Q6UWE3 100 aa11.65□□□□□ -0.54
HDDC3-206ENST00000561036 WFDC10BQ8IUB3 73 aa11.65□□□□□ -0.54
HDDC3-206ENST00000561036 CHCHD10Q8WYQ3 142 aaPredicted RBP11.65□□□□□ -0.54
HDDC3-206ENST00000561036 TRAV8-4A0A0B4J246 113 aa11.64□□□□□ -0.55
HDDC3-206ENST00000561036 LINC01556Q5JQF7 62 aa11.64□□□□□ -0.55
HDDC3-206ENST00000561036 KLK12Q9UKR0 248 aa11.64□□□□□ -0.55
HDDC3-206ENST00000561036 HERV-K104P63124 156 aa11.63□□□□□ -0.55
HDDC3-206ENST00000561036 SFTA2Q6UW10 78 aa11.63□□□□□ -0.55
HDDC3-206ENST00000561036 C5orf38Q86SI9 138 aa11.63□□□□□ -0.55
HDDC3-206ENST00000561036 COX7B2Q8TF08 81 aa11.63□□□□□ -0.55
HDDC3-206ENST00000561036 COX7A2LO14548 114 aa11.62□□□□□ -0.55
HDDC3-206ENST00000561036 IGHV3-30P01768 117 aa11.62□□□□□ -0.55
HDDC3-206ENST00000561036 IGHV3-33P01772 117 aa11.62□□□□□ -0.55
HDDC3-206ENST00000561036 IGHV3-30-5P0DP03 117 aa11.62□□□□□ -0.55
HDDC3-206ENST00000561036 PTTG1IPP53801 180 aa11.62□□□□□ -0.55
HDDC3-206ENST00000561036 CCL18P55774 89 aa11.62□□□□□ -0.55
HDDC3-206ENST00000561036 Q6ZVH6 145 aa11.62□□□□□ -0.55
HDDC3-206ENST00000561036 ZNF625Q96I27 306 aaPredicted RBP11.62□□□□□ -0.55
HDDC3-206ENST00000561036 HUWE1Q7Z6Z7 4374 aaKnown RBP11.62□□□□□ -0.55
HDDC3-206ENST00000561036 IGLL5B9A064 214 aa11.61□□□□□ -0.55
HDDC3-206ENST00000561036 CRPP02741 224 aa11.61□□□□□ -0.55
HDDC3-206ENST00000561036 DNAH10OSP0CZ25 163 aa11.61□□□□□ -0.55
HDDC3-206ENST00000561036 FXYD2P54710 66 aa11.61□□□□□ -0.55
HDDC3-206ENST00000561036 MIAQ16674 131 aa11.61□□□□□ -0.55
HDDC3-206ENST00000561036 ENHOQ6UWT2 76 aa11.61□□□□□ -0.55
HDDC3-206ENST00000561036 Q9H8V8 135 aa11.61□□□□□ -0.55
HDDC3-206ENST00000561036 TMEM238LA0A1B0GVL6 79 aa11.6□□□□□ -0.55
HDDC3-206ENST00000561036 A6NJY4 79 aa11.6□□□□□ -0.55
HDDC3-206ENST00000561036 CIRBPQ14011 172 aaKnown RBP11.6□□□□□ -0.55
HDDC3-206ENST00000561036 SPANXDQ9BXN6 97 aa11.6□□□□□ -0.55
HDDC3-206ENST00000561036 SPANXCQ9NY87 97 aa11.6□□□□□ -0.55
HDDC3-206ENST00000561036 FOXI1Q12951 378 aa11.59□□□□□ -0.55
HDDC3-206ENST00000561036 LITAFQ99732 161 aa11.59□□□□□ -0.55
HDDC3-206ENST00000561036 IGLV10-54A0A075B6I4 117 aa11.58□□□□□ -0.56
HDDC3-206ENST00000561036 A0A1B0GV90 55 aa11.58□□□□□ -0.56
HDDC3-206ENST00000561036 TAX1BP3O14907 124 aa11.58□□□□□ -0.56
HDDC3-206ENST00000561036 SMIM13P0DJ93 91 aa11.58□□□□□ -0.56
HDDC3-206ENST00000561036 Q8IZM0 81 aa11.58□□□□□ -0.56
HDDC3-206ENST00000561036 UBE2WQ96B02 151 aa11.58□□□□□ -0.56
HDDC3-206ENST00000561036 UPK3BQ9BT76 320 aa11.58□□□□□ -0.56
HDDC3-206ENST00000561036 LINC00588Q9Y4M8 146 aa11.58□□□□□ -0.56
HDDC3-206ENST00000561036 A0A1B0GWB2 263 aa11.57□□□□□ -0.56
HDDC3-206ENST00000561036 GAGE12HA6NDE8 117 aa11.57□□□□□ -0.56
HDDC3-206ENST00000561036 APOMO95445 188 aa11.56□□□□□ -0.56
HDDC3-206ENST00000561036 IFITM1P13164 125 aa11.56□□□□□ -0.56
HDDC3-206ENST00000561036 MALP21145 153 aa11.56□□□□□ -0.56
HDDC3-206ENST00000561036 TOMM7Q9P0U1 55 aa11.56□□□□□ -0.56
HDDC3-206ENST00000561036 COX11Q9Y6N1 276 aa11.56□□□□□ -0.56
HDDC3-206ENST00000561036 K7EP13 123 aa11.55□□□□□ -0.56
HDDC3-206ENST00000561036 PRSS2P07478 247 aa11.55□□□□□ -0.56
HDDC3-206ENST00000561036 RPL24P83731 157 aaKnown RBP11.55□□□□□ -0.56
HDDC3-206ENST00000561036 C6orf226Q5I0X4 101 aa11.55□□□□□ -0.56
HDDC3-206ENST00000561036 NHP2Q9NX24 153 aaKnown RBP11.55□□□□□ -0.56
HDDC3-206ENST00000561036 KLK5Q9Y337 293 aaPredicted RBP11.55□□□□□ -0.56
HDDC3-206ENST00000561036 CXCL5P42830 114 aa11.54□□□□□ -0.56
HDDC3-206ENST00000561036 ADAMTSL4-AS1Q5T5F5 129 aa11.54□□□□□ -0.56
HDDC3-206ENST00000561036 COPS9Q8WXC6 57 aa11.54□□□□□ -0.56
HDDC3-206ENST00000561036 NUPR2A6NF83 97 aa11.53□□□□□ -0.56
HDDC3-206ENST00000561036 MUSTN1Q8IVN3 82 aa11.53□□□□□ -0.56
HDDC3-206ENST00000561036 PPDPFQ9H3Y8 114 aa11.53□□□□□ -0.56
HDDC3-206ENST00000561036 DNAH9Q9NYC9 4486 aa11.52□□□□□ -0.56
HDDC3-206ENST00000561036 KIAA0087Q14695 138 aa11.52□□□□□ -0.57
HDDC3-206ENST00000561036 MEIG1Q5JSS6 88 aa11.52□□□□□ -0.57
HDDC3-206ENST00000561036 APLNQ9ULZ1 77 aa11.52□□□□□ -0.57
HDDC3-206ENST00000561036 C9orf118A6NHY6 69 aa11.51□□□□□ -0.57
HDDC3-206ENST00000561036 IBA57-AS1B1ANH7 110 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 77.1 ms