RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 CRYGDP07320 174 aa8.81□□□□□ -1
HMGB1-206ENST00000405805 COX8CQ7Z4L0 72 aa8.81□□□□□ -1
HMGB1-206ENST00000405805 LINC01356Q8N9X3 169 aa8.81□□□□□ -1
HMGB1-206ENST00000405805 DPH3Q96FX2 82 aa8.81□□□□□ -1
HMGB1-206ENST00000405805 UPK3BQ9BT76 320 aa8.81□□□□□ -1
HMGB1-206ENST00000405805 IGLV4-3A0A075B6K6 122 aa8.81□□□□□ -1
HMGB1-206ENST00000405805 SMIM26A0A096LP01 95 aa8.81□□□□□ -1
HMGB1-206ENST00000405805 NCR3O14931 201 aa8.81□□□□□ -1
HMGB1-206ENST00000405805 PSMG3-AS1Q96PY0 264 aa8.81□□□□□ -1
HMGB1-206ENST00000405805 TSHBP01222 138 aa8.81□□□□□ -1
HMGB1-206ENST00000405805 C18orf65Q6ZTR6 163 aa8.81□□□□□ -1
HMGB1-206ENST00000405805 CFAP46Q8IYW2 2715 aa8.8□□□□□ -1
HMGB1-206ENST00000405805 IGLV4-69A0A075B6H9 119 aa8.8□□□□□ -1
HMGB1-206ENST00000405805 A6NDX4 124 aa8.8□□□□□ -1
HMGB1-206ENST00000405805 IGIPA6NJ69 53 aa8.8□□□□□ -1
HMGB1-206ENST00000405805 INSP01308 110 aa8.8□□□□□ -1
HMGB1-206ENST00000405805 ELANEP08246 267 aa8.8□□□□□ -1
HMGB1-206ENST00000405805 CLPSL2Q6UWE3 100 aa8.8□□□□□ -1
HMGB1-206ENST00000405805 SPENQ96T58 3664 aaKnown RBP8.8□□□□□ -1
HMGB1-206ENST00000405805 TRBV30A0A0K0K1B3 111 aa8.8□□□□□ -1
HMGB1-206ENST00000405805 CDKN2A-AS1Q9UH64 79 aa8.8□□□□□ -1
HMGB1-206ENST00000405805 HTN3P15516 51 aa8.8□□□□□ -1
HMGB1-206ENST00000405805 ORMDL1Q9P0S3 153 aa8.8□□□□□ -1
HMGB1-206ENST00000405805 IGSF10Q6WRI0 2623 aa8.8□□□□□ -1
HMGB1-206ENST00000405805 ITPR1Q14643 2758 aa8.8□□□□□ -1
HMGB1-206ENST00000405805 IGHV4-4A0A075B6R2 117 aa8.8□□□□□ -1
HMGB1-206ENST00000405805 Q9UF83 564 aa8.8□□□□□ -1
HMGB1-206ENST00000405805 PRR4Q16378 134 aa8.79□□□□□ -1
HMGB1-206ENST00000405805 MUC4Q99102 2169 aa8.79□□□□□ -1
HMGB1-206ENST00000405805 TRAV13-2A0A0B4J235 113 aa8.79□□□□□ -1
HMGB1-206ENST00000405805 F8WEM9 126 aa8.79□□□□□ -1
HMGB1-206ENST00000405805 DCHS2Q6V1P9 2916 aa8.78□□□□□ -1
HMGB1-206ENST00000405805 LINC00467Q9BRT7 94 aa8.78□□□□□ -1
HMGB1-206ENST00000405805 NOP10Q9NPE3 64 aaKnown RBP8.78□□□□□ -1
HMGB1-206ENST00000405805 TRBV27A0A0K0K1C4 114 aa8.77□□□□□ -1
HMGB1-206ENST00000405805 LST1O00453 97 aa8.77□□□□□ -1
HMGB1-206ENST00000405805 PMAIP1Q13794 54 aa8.77□□□□□ -1
HMGB1-206ENST00000405805 DCANP1Q8TF63 244 aa8.77□□□□□ -1
HMGB1-206ENST00000405805 Q96MF0 132 aa8.77□□□□□ -1
HMGB1-206ENST00000405805 TMEM223A0PJW6 202 aa8.77□□□□□ -1.01
HMGB1-206ENST00000405805 COX7A2LO14548 114 aa8.77□□□□□ -1.01
HMGB1-206ENST00000405805 TMEM263Q8WUH6 116 aaKnown RBP8.77□□□□□ -1.01
HMGB1-206ENST00000405805 SND1-IT1Q9HBX3 110 aa8.77□□□□□ -1.01
HMGB1-206ENST00000405805 CRYBG3Q68DQ2 2970 aa8.77□□□□□ -1.01
HMGB1-206ENST00000405805 C5orf38Q86SI9 138 aa8.77□□□□□ -1.01
HMGB1-206ENST00000405805 CHD6Q8TD26 2715 aa8.77□□□□□ -1.01
HMGB1-206ENST00000405805 KLLNB2CW77 178 aa8.76□□□□□ -1.01
HMGB1-206ENST00000405805 K7EQG2 157 aa8.76□□□□□ -1.01
HMGB1-206ENST00000405805 ZNF575Q86XF7 245 aa8.76□□□□□ -1.01
HMGB1-206ENST00000405805 MED14OSP0DP75 135 aa8.76□□□□□ -1.01
HMGB1-206ENST00000405805 DSCR9P59020 149 aa8.76□□□□□ -1.01
HMGB1-206ENST00000405805 LINC01619G3V211 115 aa8.76□□□□□ -1.01
HMGB1-206ENST00000405805 H3BUA1 57 aa8.76□□□□□ -1.01
HMGB1-206ENST00000405805 HECTD1Q9ULT8 2610 aa8.75□□□□□ -1.01
HMGB1-206ENST00000405805 IGHV1-58A0A0C4DH39 117 aa8.75□□□□□ -1.01
HMGB1-206ENST00000405805 MIAQ16674 131 aa8.75□□□□□ -1.01
HMGB1-206ENST00000405805 LINC00336Q6ZUF6 198 aa8.75□□□□□ -1.01
HMGB1-206ENST00000405805 IL17DQ8TAD2 202 aa8.75□□□□□ -1.01
HMGB1-206ENST00000405805 HRNRQ86YZ3 2850 aaPredicted RBP8.74□□□□□ -1.01
HMGB1-206ENST00000405805 HIST2H2BCQ6DN03 193 aa8.74□□□□□ -1.01
HMGB1-206ENST00000405805 IGHV4-28A0A0C4DH34 117 aa8.74□□□□□ -1.01
HMGB1-206ENST00000405805 K7EMT4 169 aa8.74□□□□□ -1.01
HMGB1-206ENST00000405805 ESM1Q9NQ30 184 aa8.74□□□□□ -1.01
HMGB1-206ENST00000405805 PIK3CD-AS1Q5SR53 167 aa8.74□□□□□ -1.01
HMGB1-206ENST00000405805 ADAMTSL4-AS1Q5T5F5 129 aa8.74□□□□□ -1.01
HMGB1-206ENST00000405805 COX7B2Q8TF08 81 aa8.74□□□□□ -1.01
HMGB1-206ENST00000405805 POM121L12Q8N7R1 296 aa8.73□□□□□ -1.01
HMGB1-206ENST00000405805 SERP1Q9Y6X1 66 aa8.73□□□□□ -1.01
HMGB1-206ENST00000405805 ZANQ9Y493 2812 aa8.73□□□□□ -1.01
HMGB1-206ENST00000405805 UTP20O75691 2785 aaKnown RBP8.73□□□□□ -1.01
HMGB1-206ENST00000405805 HILS1P60008 231 aa8.72□□□□□ -1.01
HMGB1-206ENST00000405805 FUSP35637 526 aaKnown RBP eCLIP8.72□□□□□ -1.01
HMGB1-206ENST00000405805 LINC00315P59091 139 aa8.72□□□□□ -1.01
HMGB1-206ENST00000405805 Q6ZTI0 123 aa8.72□□□□□ -1.01
HMGB1-206ENST00000405805 VSIG2Q96IQ7 327 aa8.72□□□□□ -1.01
HMGB1-206ENST00000405805 FAM19A4Q96LR4 140 aa8.72□□□□□ -1.01
HMGB1-206ENST00000405805 PSPHP1O15172 72 aa8.71□□□□□ -1.01
HMGB1-206ENST00000405805 KIF25-AS1Q9Y6Z4 181 aa8.71□□□□□ -1.01
HMGB1-206ENST00000405805 Q6ZSN1 163 aa8.71□□□□□ -1.02
HMGB1-206ENST00000405805 TRBV7-7A0A0K0K1E9 115 aa8.71□□□□□ -1.02
HMGB1-206ENST00000405805 CXCL5P42830 114 aa8.71□□□□□ -1.02
HMGB1-206ENST00000405805 KRTAP10-9P60411 292 aa8.71□□□□□ -1.02
HMGB1-206ENST00000405805 RPS28P62857 69 aaKnown RBP8.71□□□□□ -1.02
HMGB1-206ENST00000405805 XCL1P47992 114 aa8.7□□□□□ -1.02
HMGB1-206ENST00000405805 NANOS2P60321 138 aaKnown RBP8.7□□□□□ -1.02
HMGB1-206ENST00000405805 USP24Q9UPU5 2620 aa8.7□□□□□ -1.02
HMGB1-206ENST00000405805 FLNBO75369 2602 aaKnown RBP8.7□□□□□ -1.02
HMGB1-206ENST00000405805 FLNAP21333 2647 aaKnown RBP8.7□□□□□ -1.02
HMGB1-206ENST00000405805 MIR7-3HGQ8N6C7 128 aa8.7□□□□□ -1.02
HMGB1-206ENST00000405805 C9orf85Q96MD7 179 aa8.69□□□□□ -1.02
HMGB1-206ENST00000405805 CELSR1Q9NYQ6 3014 aa8.69□□□□□ -1.02
HMGB1-206ENST00000405805 H0YGX0 51 aa8.69□□□□□ -1.02
HMGB1-206ENST00000405805 PF4P02776 101 aa8.69□□□□□ -1.02
HMGB1-206ENST00000405805 CRYGAP11844 174 aa8.69□□□□□ -1.02
HMGB1-206ENST00000405805 FAM19A1Q7Z5A9 133 aa8.69□□□□□ -1.02
HMGB1-206ENST00000405805 RMI2Q96E14 147 aa8.69□□□□□ -1.02
HMGB1-206ENST00000405805 IGLV10-54A0A075B6I4 117 aa8.69□□□□□ -1.02
HMGB1-206ENST00000405805 IGLV1-40P01703 118 aa8.69□□□□□ -1.02
HMGB1-206ENST00000405805 WFDC10AQ9H1F0 79 aa8.69□□□□□ -1.02
HMGB1-206ENST00000405805 TRBV6-5A0A0K0K1A5 114 aa8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms