RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 GCN1Q92616 2671 aaKnown RBP9.08□□□□□ -0.96
HDAC4-208ENST00000463007 H7C423 109 aa9.08□□□□□ -0.96
HDAC4-208ENST00000463007 C18orf65Q6ZTR6 163 aa9.08□□□□□ -0.96
HDAC4-208ENST00000463007 ZNF843Q8N446 348 aa9.08□□□□□ -0.96
HDAC4-208ENST00000463007 CDKN2A-AS1Q9UH64 79 aa9.08□□□□□ -0.96
HDAC4-208ENST00000463007 TRAV13-1A0A0B4J241 112 aa9.08□□□□□ -0.96
HDAC4-208ENST00000463007 RS1O15537 224 aa9.08□□□□□ -0.96
HDAC4-208ENST00000463007 IFITM1P13164 125 aa9.08□□□□□ -0.96
HDAC4-208ENST00000463007 RNF152Q8N8N0 203 aa9.08□□□□□ -0.96
HDAC4-208ENST00000463007 CHCHD5Q9BSY4 110 aa9.08□□□□□ -0.96
HDAC4-208ENST00000463007 ZNF462Q96JM2 2506 aa9.07□□□□□ -0.96
HDAC4-208ENST00000463007 NSUN5P1Q3KNT7 163 aa9.07□□□□□ -0.96
HDAC4-208ENST00000463007 IGHV4-31P0DP07 118 aa9.07□□□□□ -0.96
HDAC4-208ENST00000463007 RHOHQ15669 191 aa9.07□□□□□ -0.96
HDAC4-208ENST00000463007 SBSPONQ8IVN8 264 aa9.07□□□□□ -0.96
HDAC4-208ENST00000463007 LINC00467Q9BRT7 94 aa9.07□□□□□ -0.96
HDAC4-208ENST00000463007 A0A0B4J2C4 111 aa9.06□□□□□ -0.96
HDAC4-208ENST00000463007 KRTAP10-9P60411 292 aa9.06□□□□□ -0.96
HDAC4-208ENST00000463007 ODF3Q96PU9 254 aa9.06□□□□□ -0.96
HDAC4-208ENST00000463007 LINC01587Q99440 93 aa9.06□□□□□ -0.96
HDAC4-208ENST00000463007 ZNF702PQ9H963 129 aa9.06□□□□□ -0.96
HDAC4-208ENST00000463007 TRBV6-5A0A0K0K1A5 114 aa9.06□□□□□ -0.96
HDAC4-208ENST00000463007 TRBV10-2A0A0K0K1G8 114 aa9.06□□□□□ -0.96
HDAC4-208ENST00000463007 SLURP1P55000 103 aa9.06□□□□□ -0.96
HDAC4-208ENST00000463007 Q6YL49 198 aa9.06□□□□□ -0.96
HDAC4-208ENST00000463007 KRTAP1-3Q8IUG1 177 aa9.06□□□□□ -0.96
HDAC4-208ENST00000463007 UBE2E2Q96LR5 201 aa9.06□□□□□ -0.96
HDAC4-208ENST00000463007 HIVEP2P31629 2446 aa9.06□□□□□ -0.96
HDAC4-208ENST00000463007 VPREB3Q9UKI3 123 aa9.06□□□□□ -0.96
HDAC4-208ENST00000463007 GAGE12JA6NER3 117 aa9.05□□□□□ -0.96
HDAC4-208ENST00000463007 GAGE7O76087 117 aa9.05□□□□□ -0.96
HDAC4-208ENST00000463007 GAGE12FP0CL80 117 aa9.05□□□□□ -0.96
HDAC4-208ENST00000463007 GAGE12GP0CL81 117 aa9.05□□□□□ -0.96
HDAC4-208ENST00000463007 GAGE12IP0CL82 117 aa9.05□□□□□ -0.96
HDAC4-208ENST00000463007 GAGE4Q13068 117 aa9.05□□□□□ -0.96
HDAC4-208ENST00000463007 HOXD3P31249 432 aaPredicted RBP9.05□□□□□ -0.96
HDAC4-208ENST00000463007 IGHV1-58A0A0C4DH39 117 aa9.04□□□□□ -0.96
HDAC4-208ENST00000463007 MEIG1Q5JSS6 88 aa9.04□□□□□ -0.96
HDAC4-208ENST00000463007 XCL2Q9UBD3 114 aa9.04□□□□□ -0.96
HDAC4-208ENST00000463007 SETXQ7Z333 2677 aaKnown RBP9.04□□□□□ -0.96
HDAC4-208ENST00000463007 K7EQG2 157 aa9.04□□□□□ -0.96
HDAC4-208ENST00000463007 LITAFQ99732 161 aa9.04□□□□□ -0.96
HDAC4-208ENST00000463007 Q9H8V8 135 aa9.04□□□□□ -0.96
HDAC4-208ENST00000463007 TRGV11A0A075B6L2 103 aa9.04□□□□□ -0.96
HDAC4-208ENST00000463007 RPL32P62910 135 aaKnown RBP9.04□□□□□ -0.96
HDAC4-208ENST00000463007 Q8N2B8 174 aa9.04□□□□□ -0.96
HDAC4-208ENST00000463007 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.04□□□□□ -0.96
HDAC4-208ENST00000463007 VSIG2Q96IQ7 327 aa9.04□□□□□ -0.96
HDAC4-208ENST00000463007 COX6A2Q02221 97 aa9.03□□□□□ -0.96
HDAC4-208ENST00000463007 FAM104AQ969W3 186 aa9.03□□□□□ -0.96
HDAC4-208ENST00000463007 LRRC75A-AS1Q8N1F1 130 aa9.02□□□□□ -0.96
HDAC4-208ENST00000463007 APCP25054 2843 aa9.02□□□□□ -0.97
HDAC4-208ENST00000463007 TRBV30A0A0K0K1B3 111 aa9.02□□□□□ -0.97
HDAC4-208ENST00000463007 MIAQ16674 131 aa9.02□□□□□ -0.97
HDAC4-208ENST00000463007 TOMM7Q9P0U1 55 aa9.02□□□□□ -0.97
HDAC4-208ENST00000463007 MRPS36P82909 103 aaKnown RBP9.01□□□□□ -0.97
HDAC4-208ENST00000463007 DEFB113Q30KQ7 82 aa9□□□□□ -0.97
HDAC4-208ENST00000463007 PIK3CD-AS1Q5SR53 167 aa9□□□□□ -0.97
HDAC4-208ENST00000463007 TMEM61Q8N0U2 210 aa9□□□□□ -0.97
HDAC4-208ENST00000463007 A0A1W2PRX2 142 aa9□□□□□ -0.97
HDAC4-208ENST00000463007 TMEM101Q96IK0 257 aa9□□□□□ -0.97
HDAC4-208ENST00000463007 Q9HAA7 133 aa9□□□□□ -0.97
HDAC4-208ENST00000463007 PRIMA1Q86XR5 153 aa9□□□□□ -0.97
HDAC4-208ENST00000463007 UBE2D4Q9Y2X8 147 aa9□□□□□ -0.97
HDAC4-208ENST00000463007 TRGV1A0A0A0MS02 117 aa8.99□□□□□ -0.97
HDAC4-208ENST00000463007 LINC00694P0DN24 101 aa8.99□□□□□ -0.97
HDAC4-208ENST00000463007 CHCHD7Q9BUK0 85 aa8.99□□□□□ -0.97
HDAC4-208ENST00000463007 A8MTW9 85 aa8.99□□□□□ -0.97
HDAC4-208ENST00000463007 FAM236AA0A1B0GUQ0 79 aa8.98□□□□□ -0.97
HDAC4-208ENST00000463007 FAM236BA0A1B0GV22 79 aa8.98□□□□□ -0.97
HDAC4-208ENST00000463007 RBMY1BA6NDE4 496 aaKnown RBP8.98□□□□□ -0.97
HDAC4-208ENST00000463007 RBMY1EA6NEQ0 496 aaKnown RBP8.98□□□□□ -0.97
HDAC4-208ENST00000463007 RBMY1DP0C7P1 496 aaKnown RBP8.98□□□□□ -0.97
HDAC4-208ENST00000463007 CIRBPQ14011 172 aaKnown RBP8.98□□□□□ -0.97
HDAC4-208ENST00000463007 FAM110AQ9BQ89 295 aa8.98□□□□□ -0.97
HDAC4-208ENST00000463007 C11orf68Q9H3H3 251 aaKnown RBP8.98□□□□□ -0.97
HDAC4-208ENST00000463007 FLNAP21333 2647 aaKnown RBP8.97□□□□□ -0.97
HDAC4-208ENST00000463007 CITED2Q99967 270 aaPredicted RBP8.97□□□□□ -0.97
HDAC4-208ENST00000463007 LST1O00453 97 aa8.97□□□□□ -0.97
HDAC4-208ENST00000463007 DYNLRB2Q8TF09 96 aa8.97□□□□□ -0.97
HDAC4-208ENST00000463007 ANK3Q12955 4377 aaKnown RBP8.96□□□□□ -0.97
HDAC4-208ENST00000463007 TENM4Q6N022 2769 aa8.96□□□□□ -0.97
HDAC4-208ENST00000463007 YAE1D1Q9NRH1 226 aa8.96□□□□□ -0.98
HDAC4-208ENST00000463007 TINCRA0A1B0GVN0 87 aa8.96□□□□□ -0.98
HDAC4-208ENST00000463007 LINC00308Q8TCZ7 52 aa8.96□□□□□ -0.98
HDAC4-208ENST00000463007 GAGE2AQ6NT46 116 aa8.95□□□□□ -0.98
HDAC4-208ENST00000463007 SOSTDC1Q6X4U4 206 aa8.95□□□□□ -0.98
HDAC4-208ENST00000463007 ZNF415Q09FC8 603 aa8.94□□□□□ -0.98
HDAC4-208ENST00000463007 DAZ2Q13117 558 aaKnown RBP8.94□□□□□ -0.98
HDAC4-208ENST00000463007 DAZ4Q86SG3 579 aaKnown RBP8.94□□□□□ -0.98
HDAC4-208ENST00000463007 DAZ3Q9NR90 486 aaKnown RBP8.94□□□□□ -0.98
HDAC4-208ENST00000463007 PYGO1Q9Y3Y4 419 aa8.94□□□□□ -0.98
HDAC4-208ENST00000463007 PDZD2O15018 2839 aa8.94□□□□□ -0.98
HDAC4-208ENST00000463007 SPANXDQ9BXN6 97 aa8.94□□□□□ -0.98
HDAC4-208ENST00000463007 SPANXCQ9NY87 97 aa8.94□□□□□ -0.98
HDAC4-208ENST00000463007 H3BT86 120 aa8.93□□□□□ -0.98
HDAC4-208ENST00000463007 BAALC-AS2P0C853 105 aa8.93□□□□□ -0.98
HDAC4-208ENST00000463007 PLA2G2AP14555 144 aa8.93□□□□□ -0.98
HDAC4-208ENST00000463007 Q96MF0 132 aa8.93□□□□□ -0.98
HDAC4-208ENST00000463007 ITPR3Q14573 2671 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms