RNA–Protein interactions for RNA: YOR005C

DNL4, Transcript of DNA ligase required for nonhomologous end-joining (NHEJ), yeastyeast

Gene DNL4, Length 2,835 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DNL4YOR005C PHM7Q12252 991 aa2.8□□□□□ -1.96
DNL4YOR005C URA3P03962 267 aa2.79□□□□□ -1.96
DNL4YOR005C ADE3P07245 946 aaKnown RBP2.79□□□□□ -1.96
DNL4YOR005C SGF29P25554 259 aa2.79□□□□□ -1.96
DNL4YOR005C ERG3P32353 365 aa2.79□□□□□ -1.96
DNL4YOR005C SFA1P32771 386 aa2.79□□□□□ -1.96
DNL4YOR005C MAC1P35192 417 aa2.79□□□□□ -1.96
DNL4YOR005C MRPL36P36531 177 aa2.79□□□□□ -1.96
DNL4YOR005C CAJ1P39101 391 aa2.79□□□□□ -1.96
DNL4YOR005C BDH2P39713 417 aa2.79□□□□□ -1.96
DNL4YOR005C SDP1P40479 209 aa2.79□□□□□ -1.96
DNL4YOR005C LYS14P40971 790 aa2.79□□□□□ -1.96
DNL4YOR005C BUD8P41698 603 aa2.79□□□□□ -1.96
DNL4YOR005C SIP4P46954 829 aa2.79□□□□□ -1.96
DNL4YOR005C MTR3P48240 250 aaPredicted RBP2.79□□□□□ -1.96
DNL4YOR005C YGR012WP53206 393 aa2.79□□□□□ -1.96
DNL4YOR005C RRP46P53256 223 aaPredicted RBP2.79□□□□□ -1.96
DNL4YOR005C ACS1Q01574 713 aa2.79□□□□□ -1.96
DNL4YOR005C THI22Q06490 572 aa2.79□□□□□ -1.96
DNL4YOR005C ISA1Q07821 250 aaPredicted RBP2.79□□□□□ -1.96
DNL4YOR005C POM152P39685 1337 aa2.79□□□□□ -1.96
DNL4YOR005C RPL19AP0CX82 189 aaKnown RBP2.79□□□□□ -1.96
DNL4YOR005C RPL19BP0CX83 189 aaPredicted RBP2.79□□□□□ -1.96
DNL4YOR005C PDX1P16451 410 aa2.79□□□□□ -1.96
DNL4YOR005C PFK2P16862 959 aaKnown RBP RIP-Chip data2.79□□□□□ -1.96not detected
DNL4YOR005C RIT1P23796 513 aa2.79□□□□□ -1.96
DNL4YOR005C APL1P27351 700 aa2.79□□□□□ -1.96
DNL4YOR005C CTF13P35203 478 aa2.79□□□□□ -1.96
DNL4YOR005C RMA1P36001 430 aaKnown RBP2.79□□□□□ -1.96
DNL4YOR005C TEF4P36008 412 aaKnown RBP2.79□□□□□ -1.96
DNL4YOR005C BYE1P36106 594 aa2.79□□□□□ -1.96
DNL4YOR005C SRP72P38688 640 aaKnown RBP2.79□□□□□ -1.96
DNL4YOR005C YHR078WP38799 552 aa2.79□□□□□ -1.96
DNL4YOR005C BST1P43571 1029 aa2.79□□□□□ -1.96
DNL4YOR005C TAF4P50105 388 aa2.79□□□□□ -1.96
DNL4YOR005C YPL071CQ02864 156 aa2.79□□□□□ -1.96
DNL4YOR005C ATG11Q12527 1178 aa2.79□□□□□ -1.96
DNL4YOR005C SMC6Q12749 1114 aa2.79□□□□□ -1.96
DNL4YOR005C RAD50P12753 1312 aa2.79□□□□□ -1.96
DNL4YOR005C NAT1P12945 854 aaKnown RBP2.78□□□□□ -1.96
DNL4YOR005C FRS1P15624 595 aaKnown RBP2.78□□□□□ -1.96
DNL4YOR005C KRR1P25586 316 aaPredicted RBP2.78□□□□□ -1.96
DNL4YOR005C SAC6P32599 642 aaKnown RBP2.78□□□□□ -1.96
DNL4YOR005C FSH1P38777 243 aaKnown RBP2.78□□□□□ -1.96
DNL4YOR005C KHA1P40309 873 aa2.78□□□□□ -1.96
DNL4YOR005C HYR1P40581 163 aaKnown RBP2.78□□□□□ -1.96
DNL4YOR005C SMC3P47037 1230 aa2.78□□□□□ -1.96
DNL4YOR005C BSC5P53755 489 aa2.78□□□□□ -1.96
DNL4YOR005C SSL2Q00578 843 aa2.78□□□□□ -1.96
DNL4YOR005C SFI1Q12369 946 aa2.78□□□□□ -1.96
DNL4YOR005C PCD1Q12524 340 aa2.78□□□□□ -1.96
DNL4YOR005C ARG3P05150 338 aa2.78□□□□□ -1.96
DNL4YOR005C PYC1P11154 1178 aaKnown RBP2.78□□□□□ -1.96
DNL4YOR005C RED1P14291 827 aa2.78□□□□□ -1.96
DNL4YOR005C ARG1P22768 420 aa2.78□□□□□ -1.96
DNL4YOR005C ARP2P32381 391 aaKnown RBP2.78□□□□□ -1.96
DNL4YOR005C MTH1P35198 433 aa2.78□□□□□ -1.96
DNL4YOR005C YHR033WP38690 423 aa2.78□□□□□ -1.96
DNL4YOR005C SAK1P38990 1142 aa2.78□□□□□ -1.96
DNL4YOR005C PEX7P39108 375 aa2.78□□□□□ -1.96
DNL4YOR005C HST1P53685 503 aa2.78□□□□□ -1.96
DNL4YOR005C FCP1Q03254 732 aa2.78□□□□□ -1.96
DNL4YOR005C YDR131CQ03899 556 aa2.78□□□□□ -1.96
DNL4YOR005C HMO1Q03973 246 aaKnown RBP2.78□□□□□ -1.96
DNL4YOR005C MUS81Q04149 632 aaPredicted RBP2.78□□□□□ -1.96
DNL4YOR005C GAS5Q08193 484 aa2.78□□□□□ -1.96
DNL4YOR005C HOS1Q12214 470 aa2.78□□□□□ -1.96
DNL4YOR005C ZRT2Q12436 422 aa2.78□□□□□ -1.96
DNL4YOR005C ILS1P09436 1072 aaKnown RBP2.78□□□□□ -1.97
DNL4YOR005C KIN2P13186 1147 aaKnown RBP2.78□□□□□ -1.97
DNL4YOR005C CCT3P39077 534 aaKnown RBP2.78□□□□□ -1.97
DNL4YOR005C RSM25P40496 264 aa2.78□□□□□ -1.97
DNL4YOR005C ARF3P40994 183 aaRIP-Chip data2.78□□□□□ -1.97 RIP-Chip
DNL4YOR005C PFA3P42836 336 aa2.78□□□□□ -1.97
DNL4YOR005C CIR1P42940 261 aa2.78□□□□□ -1.97
DNL4YOR005C STU2P46675 888 aa2.78□□□□□ -1.97
DNL4YOR005C DUO1P53168 247 aaKnown RBP2.78□□□□□ -1.97
DNL4YOR005C YGR035CP53222 116 aa2.78□□□□□ -1.97
DNL4YOR005C ARG5,6Q01217 863 aa2.78□□□□□ -1.97
DNL4YOR005C PUS1Q12211 544 aaKnown RBP2.78□□□□□ -1.97
DNL4YOR005C PSK1P31374 1356 aa2.77□□□□□ -1.97
DNL4YOR005C ROM2P51862 1356 aaKnown RBP2.77□□□□□ -1.97
DNL4YOR005C GCN4P03069 281 aa2.77□□□□□ -1.97
DNL4YOR005C MET17P06106 444 aa2.77□□□□□ -1.97
DNL4YOR005C ADE2P21264 571 aaKnown RBP2.77□□□□□ -1.97
DNL4YOR005C PRE4P30657 266 aa2.77□□□□□ -1.97
DNL4YOR005C CNS1P33313 385 aa2.77□□□□□ -1.97
DNL4YOR005C WHI3P34761 661 aaKnown RBP2.77□□□□□ -1.97
DNL4YOR005C MIC60P36112 540 aa2.77□□□□□ -1.97
DNL4YOR005C UTP9P38882 575 aaKnown RBP2.77□□□□□ -1.97
DNL4YOR005C PES4P39684 611 aa2.77□□□□□ -1.97
DNL4YOR005C YJR061WP40355 935 aa2.77□□□□□ -1.97
DNL4YOR005C MMM1P41800 426 aa2.77□□□□□ -1.97
DNL4YOR005C PXA1P41909 870 aa2.77□□□□□ -1.97
DNL4YOR005C GSM1P42950 618 aa2.77□□□□□ -1.97
DNL4YOR005C ARC1P46672 376 aaKnown RBP2.77□□□□□ -1.97
DNL4YOR005C TAH11P47112 604 aa2.77□□□□□ -1.97
DNL4YOR005C VPS75P53853 264 aa2.77□□□□□ -1.97
DNL4YOR005C YMR155WQ03795 547 aa2.77□□□□□ -1.97
DNL4YOR005C VPS36Q06696 566 aa2.77□□□□□ -1.97
Retrieved 100 of 5,963 RNA–protein pairs in 23.8 ms