RNA–Protein interactions for RNA: YMR171C

EAR1, Transcript of Specificity factor required for Rsp5p-dependent ubiquitination, yeast

Gene EAR1, Length 1,653 nt, Biotype protein coding, Subcellular localisation Cellular bud, Cytoplasm .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
EAR1	YMR171C	MTF2	P10849	440 aa		4.92	□□□□□ -1.62
EAR1	YMR171C	RNA1	P11745	407 aa	Known RBP	4.92	□□□□□ -1.62
EAR1	YMR171C	ADE2	P21264	571 aa	Known RBP	4.92	□□□□□ -1.62
EAR1	YMR171C	RNR3	P21672	869 aa	Known RBP	4.92	□□□□□ -1.62
EAR1	YMR171C	SRB4	P32569	687 aa		4.92	□□□□□ -1.62
EAR1	YMR171C	YKR075C	P36155	307 aa		4.92	□□□□□ -1.62
EAR1	YMR171C	BUD16	P39988	312 aa		4.92	□□□□□ -1.62
EAR1	YMR171C	MCM6	P53091	1017 aa	Known RBP	4.92	□□□□□ -1.62
EAR1	YMR171C	YHM2	Q04013	314 aa		4.92	□□□□□ -1.62
EAR1	YMR171C	EIS1	Q05050	843 aa	Known RBP	4.92	□□□□□ -1.62
EAR1	YMR171C	INM2	Q05533	292 aa		4.92	□□□□□ -1.62
EAR1	YMR171C	MRD1	Q06106	887 aa	Known RBP	4.92	□□□□□ -1.62
EAR1	YMR171C	VAC14	Q06708	880 aa		4.92	□□□□□ -1.62
EAR1	YMR171C	THI3	Q07471	609 aa		4.92	□□□□□ -1.62
EAR1	YMR171C	ENB1	Q08299	606 aa		4.92	□□□□□ -1.62
EAR1	YMR171C	HFI1	Q12060	488 aa		4.92	□□□□□ -1.62
EAR1	YMR171C	RRP6	Q12149	733 aa	Known RBP	4.92	□□□□□ -1.62
EAR1	YMR171C	NYV1	Q12255	253 aa		4.92	□□□□□ -1.62
EAR1	YMR171C	MYO1	P08964	1928 aa		4.92	□□□□□ -1.62
EAR1	YMR171C	ALG1	P16661	449 aa		4.92	□□□□□ -1.62
EAR1	YMR171C	AEP2	P22136	580 aa		4.92	□□□□□ -1.62
EAR1	YMR171C	YET1	P35723	206 aa		4.92	□□□□□ -1.62
EAR1	YMR171C	OAF3	P36023	863 aa		4.92	□□□□□ -1.62
EAR1	YMR171C	GRX7	P38068	203 aa		4.92	□□□□□ -1.62
EAR1	YMR171C	GDT1	P38301	280 aa	Predicted RBP	4.92	□□□□□ -1.62
EAR1	YMR171C	YBR259W	P38338	688 aa		4.92	□□□□□ -1.62
EAR1	YMR171C	BCD1	P38772	366 aa		4.92	□□□□□ -1.62
EAR1	YMR171C	YIR042C	P40586	236 aa		4.92	□□□□□ -1.62
EAR1	YMR171C	SET2	P46995	733 aa	Known RBP	4.92	□□□□□ -1.62
EAR1	YMR171C	NIT2	P47016	307 aa		4.92	□□□□□ -1.62
EAR1	YMR171C	MNN10	P50108	393 aa	Known RBP	4.92	□□□□□ -1.62
EAR1	YMR171C	PEX8	P53248	589 aa		4.92	□□□□□ -1.62
EAR1	YMR171C	ERG5	P54781	538 aa		4.92	□□□□□ -1.62
EAR1	YMR171C	GPD1	Q00055	391 aa	Known RBP	4.92	□□□□□ -1.62
EAR1	YMR171C	DIB1	Q06819	143 aa	Predicted RBP	4.92	□□□□□ -1.62
EAR1	YMR171C	PSR2	Q07949	397 aa		4.92	□□□□□ -1.62
EAR1	YMR171C	RMP1	Q12530	201 aa		4.92	□□□□□ -1.62
EAR1	YMR171C	YOL087C	Q99247	1116 aa		4.92	□□□□□ -1.62
EAR1	YMR171C	TOP1	P04786	769 aa		4.91	□□□□□ -1.62
EAR1	YMR171C	VPS1	P21576	704 aa	Known RBP	4.91	□□□□□ -1.62
EAR1	YMR171C	SPO11	P23179	398 aa		4.91	□□□□□ -1.62
EAR1	YMR171C	PLC1	P32383	869 aa		4.91	□□□□□ -1.62
EAR1	YMR171C	ANP1	P32629	500 aa		4.91	□□□□□ -1.62
EAR1	YMR171C	CNS1	P33313	385 aa		4.91	□□□□□ -1.62
EAR1	YMR171C	TFC4	P33339	1025 aa		4.91	□□□□□ -1.62
EAR1	YMR171C	PXL1	P36166	706 aa		4.91	□□□□□ -1.62
EAR1	YMR171C	YHR202W	P38887	602 aa		4.91	□□□□□ -1.62
EAR1	YMR171C	BEM4	P39011	633 aa		4.91	□□□□□ -1.62
EAR1	YMR171C	GID8	P40208	455 aa		4.91	□□□□□ -1.62
EAR1	YMR171C	DOT5	P40553	215 aa		4.91	□□□□□ -1.62
EAR1	YMR171C	DSN1	P40568	576 aa		4.91	□□□□□ -1.62
EAR1	YMR171C	BFA1	P47113	574 aa		4.91	□□□□□ -1.62
EAR1	YMR171C	ARG5,6	Q01217	863 aa		4.91	□□□□□ -1.62
EAR1	YMR171C	PTA1	Q01329	785 aa	Predicted RBP	4.91	□□□□□ -1.62
EAR1	YMR171C	NRG1	Q03125	231 aa		4.91	□□□□□ -1.62
EAR1	YMR171C	CLU1	Q03690	1277 aa	Known RBP	4.91	□□□□□ -1.62
EAR1	YMR171C	APM4	Q99186	491 aa		4.91	□□□□□ -1.62
EAR1	YMR171C	HKR1	P41809	1802 aa		4.9	□□□□□ -1.62
EAR1	YMR171C	CHO2	P05374	869 aa	Known RBP	4.9	□□□□□ -1.62
EAR1	YMR171C	SWI6	P09959	803 aa		4.9	□□□□□ -1.62
EAR1	YMR171C	MAK31	P23059	88 aa		4.9	□□□□□ -1.62
EAR1	YMR171C	MGM1	P32266	881 aa		4.9	□□□□□ -1.62
EAR1	YMR171C	HIR1	P32479	840 aa		4.9	□□□□□ -1.62
EAR1	YMR171C	MUD2	P36084	527 aa	Known RBP	4.9	□□□□□ -1.62
EAR1	YMR171C	APN2	P38207	520 aa		4.9	□□□□□ -1.62
EAR1	YMR171C	FAT1	P38225	669 aa		4.9	□□□□□ -1.62
EAR1	YMR171C	RTS1	P38903	757 aa		4.9	□□□□□ -1.62
EAR1	YMR171C	ECM1	P39715	212 aa		4.9	□□□□□ -1.62
EAR1	YMR171C	SHQ1	P40486	507 aa	Predicted RBP	4.9	□□□□□ -1.62
EAR1	YMR171C	PCI8	P40512	444 aa		4.9	□□□□□ -1.62
EAR1	YMR171C	BOP3	P53958	396 aa		4.9	□□□□□ -1.62
EAR1	YMR171C	YMR102C	Q03177	834 aa		4.9	□□□□□ -1.62
EAR1	YMR171C	EBS1	Q03466	884 aa	Known RBP	4.9	□□□□□ -1.62
EAR1	YMR171C	GYL1	Q04322	720 aa		4.9	□□□□□ -1.62
EAR1	YMR171C	OPY2	Q06810	360 aa		4.9	□□□□□ -1.62
EAR1	YMR171C	TGL5	Q12043	749 aa		4.9	□□□□□ -1.62
EAR1	YMR171C	CDC8	P00572	216 aa		4.89	□□□□□ -1.63
EAR1	YMR171C	CKI1	P20485	582 aa		4.89	□□□□□ -1.63
EAR1	YMR171C	RIT1	P23796	513 aa		4.89	□□□□□ -1.63
EAR1	YMR171C	DCG1	P32460	244 aa		4.89	□□□□□ -1.63
EAR1	YMR171C	MYO3	P36006	1272 aa		4.89	□□□□□ -1.63
EAR1	YMR171C	YHR112C	P38716	378 aa		4.89	□□□□□ -1.63
EAR1	YMR171C	SMC2	P38989	1170 aa	Known RBP	4.89	□□□□□ -1.63
EAR1	YMR171C	MPT5	P39016	859 aa	Known RBP RIP-Chip data	4.89	□□□□□ -1.63	not detected
EAR1	YMR171C	FKH2	P41813	862 aa		4.89	□□□□□ -1.63
EAR1	YMR171C	RPN11	P43588	306 aa	Known RBP	4.89	□□□□□ -1.63
EAR1	YMR171C	CTK3	P46963	296 aa	Predicted RBP	4.89	□□□□□ -1.63
EAR1	YMR171C	YDR341C	Q05506	607 aa	Known RBP	4.89	□□□□□ -1.63
EAR1	YMR171C	NEW1	Q08972	1196 aa	Known RBP	4.89	□□□□□ -1.63
EAR1	YMR171C	NUR1	Q12066	484 aa		4.89	□□□□□ -1.63
EAR1	YMR171C	YOR111W	Q99210	232 aa		4.89	□□□□□ -1.63
EAR1	YMR171C	OM45	P16547	393 aa		4.89	□□□□□ -1.63
EAR1	YMR171C	PFK1	P16861	987 aa	Known RBP	4.89	□□□□□ -1.63
EAR1	YMR171C	PSO2	P30620	661 aa		4.89	□□□□□ -1.63
EAR1	YMR171C	SAS3	P34218	831 aa		4.89	□□□□□ -1.63
EAR1	YMR171C	MED8	P38304	223 aa		4.89	□□□□□ -1.63
EAR1	YMR171C	SAP1	P39955	897 aa	Known RBP	4.89	□□□□□ -1.63
EAR1	YMR171C	VFA1	P40080	203 aa		4.89	□□□□□ -1.63
EAR1	YMR171C	EFM4	P40516	257 aa		4.89	□□□□□ -1.63
EAR1	YMR171C	MCM21	Q06675	368 aa		4.89	□□□□□ -1.63

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