RNA–Protein interactions for RNA: YDR394W

RPT3, Transcript of ATPase of the 19S regulatory particle of the 26S proteasome, yeast

Gene RPT3, Length 1,287 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPT3	YDR394W	PUT4	P15380	627 aa		6.28	□□□□□ -1.4
RPT3	YDR394W	CBF1	P17106	351 aa		6.28	□□□□□ -1.4
RPT3	YDR394W	TRX1	P22217	103 aa	Known RBP	6.28	□□□□□ -1.4
RPT3	YDR394W	MRP4	P32902	394 aa		6.28	□□□□□ -1.4
RPT3	YDR394W	NOP4	P37838	685 aa	Known RBP	6.28	□□□□□ -1.4
RPT3	YDR394W	MED8	P38304	223 aa		6.28	□□□□□ -1.4
RPT3	YDR394W	SWC5	P38326	303 aa		6.28	□□□□□ -1.4
RPT3	YDR394W	YHR054C	P38780	354 aa		6.28	□□□□□ -1.4
RPT3	YDR394W	ERP5	P38819	212 aa		6.28	□□□□□ -1.4
RPT3	YDR394W	TDA10	P42938	290 aa		6.28	□□□□□ -1.4
RPT3	YDR394W	ATG36	P46983	293 aa		6.28	□□□□□ -1.4
RPT3	YDR394W	ZIP2	P53061	704 aa		6.28	□□□□□ -1.4
RPT3	YDR394W	COG6	P53959	839 aa		6.28	□□□□□ -1.4
RPT3	YDR394W	GPD1	Q00055	391 aa	Known RBP	6.28	□□□□□ -1.4
RPT3	YDR394W	RSC4	Q02206	625 aa		6.28	□□□□□ -1.4
RPT3	YDR394W	VPS16	Q03308	798 aa		6.28	□□□□□ -1.4
RPT3	YDR394W	TAF9	Q05027	157 aa		6.28	□□□□□ -1.4
RPT3	YDR394W	FAP7	Q12055	197 aa	Predicted RBP	6.28	□□□□□ -1.4
RPT3	YDR394W	PCD1	Q12524	340 aa		6.28	□□□□□ -1.4
RPT3	YDR394W	JIP3	O13555	125 aa		6.27	□□□□□ -1.41
RPT3	YDR394W	PMR1	P13586	950 aa		6.27	□□□□□ -1.41
RPT3	YDR394W	POX1	P13711	748 aa		6.27	□□□□□ -1.41
RPT3	YDR394W	KAR4	P25583	335 aa		6.27	□□□□□ -1.41
RPT3	YDR394W	SEC1	P30619	724 aa	Known RBP	6.27	□□□□□ -1.41
RPT3	YDR394W	GPI10	P30777	616 aa		6.27	□□□□□ -1.41
RPT3	YDR394W	TPS2	P31688	896 aa	Known RBP	6.27	□□□□□ -1.41
RPT3	YDR394W	DUG2	P38149	878 aa		6.27	□□□□□ -1.41
RPT3	YDR394W	HEK2	P38199	381 aa	Known RBP RIP-Chip data	6.27	□□□□□ -1.41	not detected
RPT3	YDR394W	CBR1	P38626	284 aa	Known RBP	6.27	□□□□□ -1.41
RPT3	YDR394W	QNS1	P38795	714 aa	Known RBP	6.27	□□□□□ -1.41
RPT3	YDR394W	LEM3	P42838	414 aa		6.27	□□□□□ -1.41
RPT3	YDR394W	SAE2	P46946	345 aa		6.27	□□□□□ -1.41
RPT3	YDR394W	ZAP1	P47043	880 aa		6.27	□□□□□ -1.41
RPT3	YDR394W	YJR054W	P47114	497 aa		6.27	□□□□□ -1.41
RPT3	YDR394W	YJR124C	P47159	448 aa		6.27	□□□□□ -1.41
RPT3	YDR394W	MND1	P53102	219 aa		6.27	□□□□□ -1.41
RPT3	YDR394W	YGL036W	P53185	909 aa	Predicted RBP	6.27	□□□□□ -1.41
RPT3	YDR394W	YNR065C	P53751	1116 aa		6.27	□□□□□ -1.41
RPT3	YDR394W	SUB1	P54000	292 aa	Known RBP	6.27	□□□□□ -1.41
RPT3	YDR394W	ADA2	Q02336	434 aa		6.27	□□□□□ -1.41
RPT3	YDR394W	YLR455W	Q06188	304 aa		6.27	□□□□□ -1.41
RPT3	YDR394W	CMS1	Q07897	291 aa	Known RBP	6.27	□□□□□ -1.41
RPT3	YDR394W	YOR059C	Q08448	450 aa	Known RBP	6.27	□□□□□ -1.41
RPT3	YDR394W	MET7	Q08645	548 aa		6.27	□□□□□ -1.41
RPT3	YDR394W	MNL2	Q12205	849 aa		6.27	□□□□□ -1.41
RPT3	YDR394W	ZPS1	Q12512	249 aa		6.27	□□□□□ -1.41
RPT3	YDR394W	YBL113C	Q7M4S9	792 aa		6.27	□□□□□ -1.41
RPT3	YDR394W	COX4	P04037	155 aa		6.26	□□□□□ -1.41
RPT3	YDR394W	MAS2	P11914	482 aa		6.26	□□□□□ -1.41
RPT3	YDR394W	YPK1	P12688	680 aa	Known RBP	6.26	□□□□□ -1.41
RPT3	YDR394W	SNA3	P14359	133 aa		6.26	□□□□□ -1.41
RPT3	YDR394W	SLY1	P22213	666 aa		6.26	□□□□□ -1.41
RPT3	YDR394W	MGT1	P26188	188 aa		6.26	□□□□□ -1.41
RPT3	YDR394W	EFB1	P32471	206 aa	Known RBP	6.26	□□□□□ -1.41
RPT3	YDR394W	RPT1	P33299	467 aa	Known RBP	6.26	□□□□□ -1.41
RPT3	YDR394W	KDX1	P36005	433 aa		6.26	□□□□□ -1.41
RPT3	YDR394W	GPT2	P36148	743 aa		6.26	□□□□□ -1.41
RPT3	YDR394W	APE3	P37302	537 aa	Known RBP	6.26	□□□□□ -1.41
RPT3	YDR394W	GRS1	P38088	690 aa	Known RBP	6.26	□□□□□ -1.41
RPT3	YDR394W	FLR1	P38124	548 aa		6.26	□□□□□ -1.41
RPT3	YDR394W	MSR1	P38714	643 aa		6.26	□□□□□ -1.41
RPT3	YDR394W	SPC97	P38863	823 aa		6.26	□□□□□ -1.41
RPT3	YDR394W	REV7	P38927	245 aa		6.26	□□□□□ -1.41
RPT3	YDR394W	ERP2	P39704	215 aa		6.26	□□□□□ -1.41
RPT3	YDR394W	KHA1	P40309	873 aa		6.26	□□□□□ -1.41
RPT3	YDR394W	MDJ2	P42834	146 aa		6.26	□□□□□ -1.41
RPT3	YDR394W	YJL045W	P47052	634 aa		6.26	□□□□□ -1.41
RPT3	YDR394W	ALT1	P52893	592 aa		6.26	□□□□□ -1.41
RPT3	YDR394W	LSC1	P53598	329 aa	Known RBP	6.26	□□□□□ -1.41
RPT3	YDR394W	MSC2	Q03455	724 aa		6.26	□□□□□ -1.41
RPT3	YDR394W	SPC24	Q04477	213 aa		6.26	□□□□□ -1.41
RPT3	YDR394W	YDR338C	Q05497	695 aa		6.26	□□□□□ -1.41
RPT3	YDR394W	AIM39	Q08223	395 aa		6.26	□□□□□ -1.41
RPT3	YDR394W	VHS3	Q08438	674 aa		6.26	□□□□□ -1.41
RPT3	YDR394W	RRD2	Q12461	358 aa		6.26	□□□□□ -1.41
RPT3	YDR394W	CMD1	P06787	147 aa	Known RBP	6.25	□□□□□ -1.41
RPT3	YDR394W	ILS1	P09436	1072 aa	Known RBP	6.25	□□□□□ -1.41
RPT3	YDR394W	RPL4A	P10664	362 aa	Known RBP	6.25	□□□□□ -1.41
RPT3	YDR394W	CDC24	P11433	854 aa	Predicted RBP	6.25	□□□□□ -1.41
RPT3	YDR394W	GLN3	P18494	730 aa		6.25	□□□□□ -1.41
RPT3	YDR394W	ARG1	P22768	420 aa		6.25	□□□□□ -1.41
RPT3	YDR394W	RSC6	P25632	483 aa		6.25	□□□□□ -1.41
RPT3	YDR394W	PRR1	P28708	518 aa		6.25	□□□□□ -1.41
RPT3	YDR394W	MSS51	P32335	436 aa		6.25	□□□□□ -1.41
RPT3	YDR394W	PDB1	P32473	366 aa	Known RBP	6.25	□□□□□ -1.41
RPT3	YDR394W	BUD2	P33314	1104 aa		6.25	□□□□□ -1.41
RPT3	YDR394W	YBR062C	P38239	180 aa		6.25	□□□□□ -1.41
RPT3	YDR394W	KSP1	P38691	1029 aa	Known RBP	6.25	□□□□□ -1.41
RPT3	YDR394W	RPL4B	P49626	362 aa	Known RBP	6.25	□□□□□ -1.41
RPT3	YDR394W	SCS3	P53012	380 aa		6.25	□□□□□ -1.41
RPT3	YDR394W	TPO2	P53283	614 aa		6.25	□□□□□ -1.41
RPT3	YDR394W	NOP13	P53883	403 aa	Known RBP RIP-Chip data	6.25	□□□□□ -1.41	not detected
RPT3	YDR394W	YNL040W	P53960	456 aa	Predicted RBP	6.25	□□□□□ -1.41
RPT3	YDR394W	KTR5	P53966	522 aa	Predicted RBP	6.25	□□□□□ -1.41
RPT3	YDR394W	CDC55	Q00362	526 aa		6.25	□□□□□ -1.41
RPT3	YDR394W	VPS72	Q03388	795 aa		6.25	□□□□□ -1.41
RPT3	YDR394W	ARO80	Q04052	950 aa		6.25	□□□□□ -1.41
RPT3	YDR394W	TRE1	Q08919	783 aa		6.25	□□□□□ -1.41
RPT3	YDR394W	YPR027C	Q12079	277 aa		6.25	□□□□□ -1.41
RPT3	YDR394W	AVL9	Q12500	764 aa		6.25	□□□□□ -1.41

Retrieved 100 of 5,963 RNA–protein pairs in 17.5 ms