RNA–Protein interactions for RNA: YDR027C

VPS54, Transcript of Component of the GARP (Golgi-associated retrograde protein) complex, yeastyeast

Gene VPS54, Length 2,670 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS54YDR027C AIM41Q12032 185 aa2.01□□□□□ -2.09
VPS54YDR027C RPO21P04050 1733 aaKnown RBP2□□□□□ -2.09
VPS54YDR027C ULS1Q08562 1619 aa2□□□□□ -2.09
VPS54YDR027C CAP1P28495 268 aaKnown RBP2□□□□□ -2.09
VPS54YDR027C PPG1P32838 368 aa2□□□□□ -2.09
VPS54YDR027C RET2P43621 546 aa2□□□□□ -2.09
VPS54YDR027C WAR1Q03631 944 aa2□□□□□ -2.09
VPS54YDR027C NSE5Q03718 556 aa2□□□□□ -2.09
VPS54YDR027C NUP53Q03790 475 aa2□□□□□ -2.09
VPS54YDR027C MRPL1Q04599 285 aa2□□□□□ -2.09
VPS54YDR027C YLR001CQ07895 862 aa2□□□□□ -2.09
VPS54YDR027C HOP1P20050 605 aa2□□□□□ -2.09
VPS54YDR027C GCS1P35197 352 aa2□□□□□ -2.09
VPS54YDR027C CCT4P39078 528 aaKnown RBP2□□□□□ -2.09
VPS54YDR027C YMR124WP39523 943 aaKnown RBP2□□□□□ -2.09
VPS54YDR027C YIL092WP40497 633 aa2□□□□□ -2.09
VPS54YDR027C NOP15P53927 220 aaPredicted RBP2□□□□□ -2.09
VPS54YDR027C DOS2P54858 310 aa2□□□□□ -2.09
VPS54YDR027C TFB2Q02939 513 aa2□□□□□ -2.09
VPS54YDR027C HER1Q12276 1246 aa2□□□□□ -2.09
VPS54YDR027C YLR111WQ12528 110 aa2□□□□□ -2.09
VPS54YDR027C MGM1P32266 881 aa1.99□□□□□ -2.09
VPS54YDR027C CCL1P37366 393 aa1.99□□□□□ -2.09
VPS54YDR027C PRM2P40534 656 aa1.99□□□□□ -2.09
VPS54YDR027C OSW7P43611 510 aa1.99□□□□□ -2.09
VPS54YDR027C SAP4P53036 818 aa1.99□□□□□ -2.09
VPS54YDR027C YNL193WP53870 558 aa1.99□□□□□ -2.09
VPS54YDR027C RPS15Q01855 142 aaKnown RBP1.99□□□□□ -2.09
VPS54YDR027C YPL071CQ02864 156 aa1.99□□□□□ -2.09
VPS54YDR027C TPO3Q06451 622 aa1.99□□□□□ -2.09
VPS54YDR027C BI2P03873 423 aa1.99□□□□□ -2.09
VPS54YDR027C YIL024CP40543 189 aa1.99□□□□□ -2.09
VPS54YDR027C MAF1P41910 395 aa1.99□□□□□ -2.09
VPS54YDR027C SPN1Q06505 410 aaPredicted RBP1.99□□□□□ -2.09
VPS54YDR027C TY1B-JR2P47100 1755 aaKnown RBP1.99□□□□□ -2.09
VPS54YDR027C TY1B-ER2Q03619 1755 aa1.99□□□□□ -2.09
VPS54YDR027C TY1B-MR1Q04214 1755 aa1.99□□□□□ -2.09
VPS54YDR027C TY1B-MR2Q04670 1755 aaKnown RBP1.99□□□□□ -2.09
VPS54YDR027C TY1B-LR1Q12088 1755 aaKnown RBP1.99□□□□□ -2.09
VPS54YDR027C TY1B-NL1Q12112 1755 aa1.99□□□□□ -2.09
VPS54YDR027C TY1B-GR1Q12141 1755 aa1.99□□□□□ -2.09
VPS54YDR027C TY1B-BLQ12490 1755 aa1.99□□□□□ -2.09
VPS54YDR027C YMR085WP0CF18 432 aa1.98□□□□□ -2.09
VPS54YDR027C RRP14P36080 434 aaKnown RBP1.98□□□□□ -2.09
VPS54YDR027C CDS1P38221 457 aa1.98□□□□□ -2.09
VPS54YDR027C TOP2P06786 1428 aaKnown RBP1.98□□□□□ -2.09
VPS54YDR027C SNT2P53127 1403 aa1.98□□□□□ -2.09
VPS54YDR027C YAT2P40017 923 aa1.98□□□□□ -2.09
VPS54YDR027C TDA10P42938 290 aa1.98□□□□□ -2.09
VPS54YDR027C GIS2P53849 153 aaKnown RBP RIP-Chip data1.98□□□□□ -2.09not detected
VPS54YDR027C YCG1Q06680 1035 aa1.98□□□□□ -2.09
VPS54YDR027C MYO4P32492 1471 aa1.98□□□□□ -2.09
VPS54YDR027C SEC65P29478 273 aa1.97□□□□□ -2.09
VPS54YDR027C YHR033WP38690 423 aa1.97□□□□□ -2.09
VPS54YDR027C CKB2P38930 258 aa1.97□□□□□ -2.09
VPS54YDR027C IES1P43579 692 aa1.97□□□□□ -2.09
VPS54YDR027C SDA1P53313 767 aaKnown RBP1.97□□□□□ -2.09
VPS54YDR027C TY3B-GQ99315 1547 aa1.97□□□□□ -2.09
VPS54YDR027C TY1B-DR3Q99231 1755 aa1.97□□□□□ -2.09
VPS54YDR027C CHC1P22137 1653 aaKnown RBP1.97□□□□□ -2.09
VPS54YDR027C TY1B-NL2Q99337 1749 aaKnown RBP1.97□□□□□ -2.09
VPS54YDR027C YPR117WQ06116 2489 aa1.97□□□□□ -2.09
VPS54YDR027C EHT1P38295 451 aa1.97□□□□□ -2.09
VPS54YDR027C MGS1P40151 587 aa1.97□□□□□ -2.09
VPS54YDR027C LRO1P40345 661 aa1.97□□□□□ -2.09
VPS54YDR027C SAE2P46946 345 aa1.97□□□□□ -2.09
VPS54YDR027C YGR153WP48238 217 aa1.97□□□□□ -2.09
VPS54YDR027C BUD7Q08754 746 aa1.97□□□□□ -2.09
VPS54YDR027C AHA1Q12449 350 aaKnown RBP1.97□□□□□ -2.09
VPS54YDR027C YPT10P38146 199 aa1.96□□□□□ -2.1
VPS54YDR027C YAP3P38749 330 aa1.96□□□□□ -2.1
VPS54YDR027C FLO5P38894 1075 aa1.96□□□□□ -2.1
VPS54YDR027C CFD1P40558 293 aa1.96□□□□□ -2.1
VPS54YDR027C IRC7P43623 340 aa1.96□□□□□ -2.1
VPS54YDR027C COP1P53622 1201 aaKnown RBP1.96□□□□□ -2.1
VPS54YDR027C PCL8Q08966 492 aa1.96□□□□□ -2.1
VPS54YDR027C YOR111WQ99210 232 aa1.96□□□□□ -2.1
VPS54YDR027C GLN4P13188 809 aaKnown RBP1.96□□□□□ -2.1
VPS54YDR027C SFP1P32432 683 aa1.96□□□□□ -2.1
VPS54YDR027C MNN1P39106 762 aa1.96□□□□□ -2.1
VPS54YDR027C YJL193WP39542 402 aa1.96□□□□□ -2.1
VPS54YDR027C YJR142WP47173 342 aa1.96□□□□□ -2.1
VPS54YDR027C USA1Q03714 838 aa1.96□□□□□ -2.1
VPS54YDR027C ARR3Q06598 404 aa1.96□□□□□ -2.1
VPS54YDR027C SNA4Q07549 140 aa1.96□□□□□ -2.1
VPS54YDR027C RPS21BQ3E754 87 aaKnown RBP1.96□□□□□ -2.1
VPS54YDR027C YOR1P53049 1477 aa1.96□□□□□ -2.1
VPS54YDR027C HAP1P0CE41 1502 aa1.96□□□□□ -2.1
VPS54YDR027C TUF1P02992 437 aaKnown RBP1.95□□□□□ -2.1
VPS54YDR027C FPR3P38911 411 aaKnown RBP1.95□□□□□ -2.1
VPS54YDR027C YJR096WP47137 282 aa1.95□□□□□ -2.1
VPS54YDR027C ENP2P48234 707 aaKnown RBP1.95□□□□□ -2.1
VPS54YDR027C HRD3Q05787 833 aa1.95□□□□□ -2.1
VPS54YDR027C AAC1P04710 309 aa1.95□□□□□ -2.1
VPS54YDR027C YER190C-BP0CX94 160 aa1.95□□□□□ -2.1
VPS54YDR027C YEL077W-AP0CX95 160 aa1.95□□□□□ -2.1
VPS54YDR027C YGR296C-BP0CX96 160 aa1.95□□□□□ -2.1
VPS54YDR027C YPL283W-BP0CX97 160 aa1.95□□□□□ -2.1
VPS54YDR027C YPR204C-AP0CX98 160 aa1.95□□□□□ -2.1
VPS54YDR027C YPK1P12688 680 aaKnown RBP1.95□□□□□ -2.1
Retrieved 100 of 5,963 RNA–protein pairs in 10.2 ms