RNA–Protein interactions for RNA: YDL126C

CDC48, Transcript of AAA ATPase, yeast

Gene CDC48, Length 2,508 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC48	YDL126C	ECM38	Q05902	660 aa	Predicted RBP	4.76	□□□□□ -1.65
CDC48	YDL126C	MRD1	Q06106	887 aa	Known RBP	4.76	□□□□□ -1.65
CDC48	YDL126C	CSR1	Q06705	408 aa	Known RBP	4.76	□□□□□ -1.65
CDC48	YDL126C	MET7	Q08645	548 aa		4.76	□□□□□ -1.65
CDC48	YDL126C	YTM1	Q12024	460 aa	Predicted RBP	4.76	□□□□□ -1.65
CDC48	YDL126C	MATALPHA2	P0CY08	210 aa		4.76	□□□□□ -1.65
CDC48	YDL126C	HMLALPHA2	P0CY09	210 aa		4.76	□□□□□ -1.65
CDC48	YDL126C	CDC48	P25694	835 aa	Known RBP	4.76	□□□□□ -1.65
CDC48	YDL126C	SMY1	P32364	656 aa	Known RBP	4.76	□□□□□ -1.65
CDC48	YDL126C	PTH2	P34222	208 aa		4.76	□□□□□ -1.65
CDC48	YDL126C	YKR078W	P36158	585 aa	Known RBP	4.76	□□□□□ -1.65
CDC48	YDL126C	SHM2	P37291	469 aa	Known RBP	4.76	□□□□□ -1.65
CDC48	YDL126C	RIM4	P38741	713 aa		4.76	□□□□□ -1.65
CDC48	YDL126C	CRG1	P38892	291 aa	RIP-Chip data	4.76	□□□□□ -1.65	not detected
CDC48	YDL126C	AXL2	P38928	823 aa		4.76	□□□□□ -1.65
CDC48	YDL126C	FMP10	P40098	244 aa		4.76	□□□□□ -1.65
CDC48	YDL126C	YIL166C	P40445	542 aa		4.76	□□□□□ -1.65
CDC48	YDL126C	CIR1	P42940	261 aa		4.76	□□□□□ -1.65
CDC48	YDL126C	MNN11	P46985	422 aa	Known RBP	4.76	□□□□□ -1.65
CDC48	YDL126C	SET2	P46995	733 aa	Known RBP	4.76	□□□□□ -1.65
CDC48	YDL126C	ATP22	P50273	684 aa	Predicted RBP	4.76	□□□□□ -1.65
CDC48	YDL126C	PCL8	Q08966	492 aa		4.76	□□□□□ -1.65
CDC48	YDL126C	YBR182C-A	Q8TGU6	64 aa		4.76	□□□□□ -1.65
CDC48	YDL126C	LCB1	P25045	558 aa	Known RBP	4.75	□□□□□ -1.65
CDC48	YDL126C	NIP100	P33420	868 aa		4.75	□□□□□ -1.65
CDC48	YDL126C	PTK1	P36002	662 aa	Predicted RBP	4.75	□□□□□ -1.65
CDC48	YDL126C	STN1	P38960	494 aa		4.75	□□□□□ -1.65
CDC48	YDL126C	ACO2	P39533	789 aa		4.75	□□□□□ -1.65
CDC48	YDL126C	SDS3	P40505	327 aa		4.75	□□□□□ -1.65
CDC48	YDL126C	YFH7	P43591	353 aa		4.75	□□□□□ -1.65
CDC48	YDL126C	YJL045W	P47052	634 aa		4.75	□□□□□ -1.65
CDC48	YDL126C	RNR4	P49723	345 aa	Known RBP	4.75	□□□□□ -1.65
CDC48	YDL126C	CAF120	P53836	1060 aa		4.75	□□□□□ -1.65
CDC48	YDL126C	UFO1	Q04511	668 aa		4.75	□□□□□ -1.65
CDC48	YDL126C	YPL150W	Q12152	901 aa		4.75	□□□□□ -1.65
CDC48	YDL126C	GRX6	Q12438	231 aa		4.75	□□□□□ -1.65
CDC48	YDL126C	APM4	Q99186	491 aa		4.75	□□□□□ -1.65
CDC48	YDL126C	COQ1	P18900	473 aa		4.75	□□□□□ -1.65
CDC48	YDL126C	GSY1	P23337	708 aa		4.75	□□□□□ -1.65
CDC48	YDL126C	ORC2	P32833	620 aa		4.75	□□□□□ -1.65
CDC48	YDL126C	ATG14	P38270	344 aa		4.75	□□□□□ -1.65
CDC48	YDL126C	SHC1	P39000	512 aa		4.75	□□□□□ -1.65
CDC48	YDL126C	SPC72	P39723	622 aa		4.75	□□□□□ -1.65
CDC48	YDL126C	YER034W	P40022	185 aa	Known RBP	4.75	□□□□□ -1.65
CDC48	YDL126C	LAM5	P43560	674 aa		4.75	□□□□□ -1.65
CDC48	YDL126C	YGR153W	P48238	217 aa		4.75	□□□□□ -1.65
CDC48	YDL126C	ALT1	P52893	592 aa		4.75	□□□□□ -1.65
CDC48	YDL126C	LAP3	Q01532	483 aa	Known RBP RIP-Chip data	4.75	□□□□□ -1.65	not detected
CDC48	YDL126C	EAR1	Q03212	550 aa		4.75	□□□□□ -1.65
CDC48	YDL126C	YMR265C	Q03508	461 aa	Known RBP	4.75	□□□□□ -1.65
CDC48	YDL126C	ISA1	Q07821	250 aa	Predicted RBP	4.75	□□□□□ -1.65
CDC48	YDL126C	YOL114C	Q12322	202 aa		4.75	□□□□□ -1.65
CDC48	YDL126C	FLO1	P32768	1537 aa		4.75	□□□□□ -1.65
CDC48	YDL126C	SAM35	P14693	329 aa		4.74	□□□□□ -1.65
CDC48	YDL126C	TAL1	P15019	335 aa	Known RBP	4.74	□□□□□ -1.65
CDC48	YDL126C	STE11	P23561	717 aa		4.74	□□□□□ -1.65
CDC48	YDL126C	PRP19	P32523	503 aa	Known RBP	4.74	□□□□□ -1.65
CDC48	YDL126C	RPT3	P33298	428 aa	Known RBP	4.74	□□□□□ -1.65
CDC48	YDL126C	POP2	P39008	433 aa		4.74	□□□□□ -1.65
CDC48	YDL126C	RSM25	P40496	264 aa		4.74	□□□□□ -1.65
CDC48	YDL126C	RRG1	Q12167	365 aa	Predicted RBP	4.74	□□□□□ -1.65
CDC48	YDL126C	APC2	Q12440	853 aa		4.74	□□□□□ -1.65
CDC48	YDL126C	SNF1	P06782	633 aa	Known RBP	4.74	□□□□□ -1.65
CDC48	YDL126C	ATP12	P22135	325 aa		4.74	□□□□□ -1.65
CDC48	YDL126C	RRP43	P25359	394 aa	Predicted RBP	4.74	□□□□□ -1.65
CDC48	YDL126C	YCL002C	P25565	263 aa		4.74	□□□□□ -1.65
CDC48	YDL126C	PGS1	P25578	521 aa		4.74	□□□□□ -1.65
CDC48	YDL126C	PRO1	P32264	428 aa		4.74	□□□□□ -1.65
CDC48	YDL126C	MDL2	P33311	773 aa		4.74	□□□□□ -1.65
CDC48	YDL126C	YKL100C	P34248	587 aa		4.74	□□□□□ -1.65
CDC48	YDL126C	OLA1	P38219	394 aa	Known RBP	4.74	□□□□□ -1.65
CDC48	YDL126C	SCW11	P53189	542 aa		4.74	□□□□□ -1.65
CDC48	YDL126C	RPS15	Q01855	142 aa	Known RBP	4.74	□□□□□ -1.65
CDC48	YDL126C	GUP2	Q08929	609 aa		4.74	□□□□□ -1.65
CDC48	YDL126C	HFI1	Q12060	488 aa		4.74	□□□□□ -1.65
CDC48	YDL126C	BRR1	Q99177	341 aa	Predicted RBP	4.74	□□□□□ -1.65
CDC48	YDL126C	ADE8	P04161	214 aa		4.73	□□□□□ -1.65
CDC48	YDL126C	NCP1	P16603	691 aa	Known RBP	4.73	□□□□□ -1.65
CDC48	YDL126C	PFK2	P16862	959 aa	Known RBP RIP-Chip data	4.73	□□□□□ -1.65	not detected
CDC48	YDL126C	AEP2	P22136	580 aa		4.73	□□□□□ -1.65
CDC48	YDL126C	SEC21	P32074	935 aa	Known RBP	4.73	□□□□□ -1.65
CDC48	YDL126C	RIB7	P33312	244 aa		4.73	□□□□□ -1.65
CDC48	YDL126C	COY1	P34237	679 aa		4.73	□□□□□ -1.65
CDC48	YDL126C	RRP1	P35178	278 aa	Predicted RBP	4.73	□□□□□ -1.65
CDC48	YDL126C	PGM2	P37012	569 aa	Known RBP	4.73	□□□□□ -1.65
CDC48	YDL126C	FAT1	P38225	669 aa		4.73	□□□□□ -1.65
CDC48	YDL126C	UBS1	P38290	277 aa		4.73	□□□□□ -1.65
CDC48	YDL126C	EFM2	P38347	419 aa		4.73	□□□□□ -1.65
CDC48	YDL126C	YIR007W	P40566	764 aa		4.73	□□□□□ -1.65
CDC48	YDL126C	CPR6	P53691	371 aa	Known RBP	4.73	□□□□□ -1.65
CDC48	YDL126C	NCS2	P53923	493 aa	Predicted RBP	4.73	□□□□□ -1.65
CDC48	YDL126C	ERV25	P54837	211 aa	Known RBP	4.73	□□□□□ -1.65
CDC48	YDL126C	ARP4	P80428	489 aa		4.73	□□□□□ -1.65
CDC48	YDL126C	YLR407W	Q06070	228 aa		4.73	□□□□□ -1.65
CDC48	YDL126C	ATG26	Q06321	1198 aa		4.73	□□□□□ -1.65
CDC48	YDL126C	ARR2	Q06597	130 aa		4.73	□□□□□ -1.65
CDC48	YDL126C	SWA2	Q06677	668 aa		4.73	□□□□□ -1.65
CDC48	YDL126C	LAP2	Q10740	671 aa		4.73	□□□□□ -1.65
CDC48	YDL126C	TRM8	Q12009	286 aa		4.73	□□□□□ -1.65
CDC48	YDL126C	DCS2	Q12123	353 aa		4.73	□□□□□ -1.65

Retrieved 100 of 5,963 RNA–protein pairs in 10.6 ms