RNA–Protein interactions for RNA: YCR093W

CDC39, Transcript of Component of the CCR4-NOT1 core complex, yeastyeast

Gene CDC39, Length 6,327 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC39YCR093W UGP1P32861 499 aaKnown RBP1.34□□□□□ -2.19
CDC39YCR093W SCO2P38072 301 aa1.34□□□□□ -2.19
CDC39YCR093W CTP1P38152 299 aa1.34□□□□□ -2.19
CDC39YCR093W VRG4P40107 337 aa1.34□□□□□ -2.19
CDC39YCR093W YIL077CP40508 320 aa1.34□□□□□ -2.19
CDC39YCR093W PRM2P40534 656 aa1.34□□□□□ -2.19
CDC39YCR093W MTC3P53077 123 aa1.34□□□□□ -2.19
CDC39YCR093W LRS4Q04087 347 aaKnown RBP1.34□□□□□ -2.19
CDC39YCR093W STP4Q07351 490 aa1.34□□□□□ -2.19
CDC39YCR093W CDC45Q08032 650 aa1.34□□□□□ -2.19
CDC39YCR093W YOL114CQ12322 202 aa1.34□□□□□ -2.19
CDC39YCR093W NOP58Q12499 511 aaKnown RBP1.34□□□□□ -2.19
CDC39YCR093W ENT1Q12518 454 aa1.34□□□□□ -2.19
CDC39YCR093W SCC2Q04002 1493 aa1.34□□□□□ -2.19
CDC39YCR093W TY3B-GQ99315 1547 aa1.34□□□□□ -2.19
CDC39YCR093W HXK2P04807 486 aaKnown RBP1.34□□□□□ -2.2
CDC39YCR093W PMA1P05030 918 aaKnown RBP1.34□□□□□ -2.2
CDC39YCR093W TRP4P07285 380 aaPredicted RBP1.34□□□□□ -2.2
CDC39YCR093W KES1P35844 434 aaKnown RBP1.34□□□□□ -2.2
CDC39YCR093W KTR3P38130 404 aaPredicted RBP1.34□□□□□ -2.2
CDC39YCR093W YIL166CP40445 542 aa1.34□□□□□ -2.2
CDC39YCR093W UBC11P52492 156 aa1.34□□□□□ -2.2
CDC39YCR093W YOR111WQ99210 232 aa1.34□□□□□ -2.2
CDC39YCR093W TUB2P02557 457 aaKnown RBP1.34□□□□□ -2.2
CDC39YCR093W SES1P07284 462 aaKnown RBP1.34□□□□□ -2.2
CDC39YCR093W HMG1P12683 1054 aa1.34□□□□□ -2.2
CDC39YCR093W CBP3P21560 335 aa1.34□□□□□ -2.2
CDC39YCR093W RPN12P32496 274 aa1.34□□□□□ -2.2
CDC39YCR093W SDH8P38345 138 aa1.34□□□□□ -2.2
CDC39YCR093W CCT5P40413 562 aaKnown RBP1.34□□□□□ -2.2
CDC39YCR093W BIT61P47041 543 aa1.34□□□□□ -2.2
CDC39YCR093W UBC9P50623 157 aaPredicted RBP1.34□□□□□ -2.2
CDC39YCR093W APM1Q00776 475 aaPredicted RBP1.34□□□□□ -2.2
CDC39YCR093W RPT6Q01939 405 aaKnown RBP1.34□□□□□ -2.2
CDC39YCR093W YOR389WQ08912 624 aa1.34□□□□□ -2.2
CDC39YCR093W TY1B-NL2Q99337 1749 aaKnown RBP1.33□□□□□ -2.2
CDC39YCR093W FUR1P18562 216 aaKnown RBP1.33□□□□□ -2.2
CDC39YCR093W SFB3P38810 929 aa1.33□□□□□ -2.2
CDC39YCR093W YJL193WP39542 402 aa1.33□□□□□ -2.2
CDC39YCR093W AAD4Q07747 329 aa1.33□□□□□ -2.2
CDC39YCR093W TAF2P23255 1407 aa1.33□□□□□ -2.2
CDC39YCR093W ILV2P07342 687 aaKnown RBP1.33□□□□□ -2.2
CDC39YCR093W POL3P15436 1097 aa1.33□□□□□ -2.2
CDC39YCR093W HNM1P19807 563 aa1.33□□□□□ -2.2
CDC39YCR093W ADE2P21264 571 aaKnown RBP1.33□□□□□ -2.2
CDC39YCR093W PEX1P24004 1043 aa1.33□□□□□ -2.2
CDC39YCR093W SEC21P32074 935 aaKnown RBP1.33□□□□□ -2.2
CDC39YCR093W SOF1P33750 489 aaKnown RBP1.33□□□□□ -2.2
CDC39YCR093W CCL1P37366 393 aa1.33□□□□□ -2.2
CDC39YCR093W GDT1P38301 280 aaPredicted RBP1.33□□□□□ -2.2
CDC39YCR093W PCL5P38794 229 aa1.33□□□□□ -2.2
CDC39YCR093W MAM1P40065 302 aa1.33□□□□□ -2.2
CDC39YCR093W VID28P40547 921 aa1.33□□□□□ -2.2
CDC39YCR093W RSC8P43609 557 aaKnown RBP1.33□□□□□ -2.2
CDC39YCR093W IST1P53843 298 aaPredicted RBP1.33□□□□□ -2.2
CDC39YCR093W TEP1P53916 434 aa1.33□□□□□ -2.2
CDC39YCR093W TRS23Q03784 219 aa1.33□□□□□ -2.2
CDC39YCR093W YPL191CQ08930 360 aa1.33□□□□□ -2.2
CDC39YCR093W BAG7Q12128 409 aa1.33□□□□□ -2.2
CDC39YCR093W WHI2P12611 486 aa1.33□□□□□ -2.2
CDC39YCR093W AIM3P38266 947 aaKnown RBP1.33□□□□□ -2.2
CDC39YCR093W COG6P53959 839 aa1.33□□□□□ -2.2
CDC39YCR093W YDL086WQ07505 273 aa1.33□□□□□ -2.2
CDC39YCR093W SWT1Q12104 458 aa1.33□□□□□ -2.2
CDC39YCR093W YLR049CQ12110 428 aa1.33□□□□□ -2.2
CDC39YCR093W PAN1P32521 1480 aa1.33□□□□□ -2.2
CDC39YCR093W MRP7P12687 371 aa1.33□□□□□ -2.2
CDC39YCR093W PLC1P32383 869 aa1.33□□□□□ -2.2
CDC39YCR093W RPC34P32910 317 aa1.33□□□□□ -2.2
CDC39YCR093W YJL206CP39529 758 aa1.33□□□□□ -2.2
CDC39YCR093W GID8P40208 455 aa1.33□□□□□ -2.2
CDC39YCR093W AHA1Q12449 350 aaKnown RBP1.33□□□□□ -2.2
CDC39YCR093W RTP1Q12751 981 aa1.33□□□□□ -2.2
CDC39YCR093W MEF1P25039 761 aa1.33□□□□□ -2.2
CDC39YCR093W FUB1P25659 250 aa1.33□□□□□ -2.2
CDC39YCR093W CMK1P27466 446 aaKnown RBP1.33□□□□□ -2.2
CDC39YCR093W CTS1P29029 562 aa1.33□□□□□ -2.2
CDC39YCR093W HRR25P29295 494 aaKnown RBP1.33□□□□□ -2.2
CDC39YCR093W AKL1P38080 1108 aaKnown RBP1.33□□□□□ -2.2
CDC39YCR093W MUP3P38734 546 aa1.33□□□□□ -2.2
CDC39YCR093W SSZ1P38788 538 aaKnown RBP1.33□□□□□ -2.2
CDC39YCR093W ERP2P39704 215 aa1.33□□□□□ -2.2
CDC39YCR093W RSM28Q03430 361 aa1.33□□□□□ -2.2
CDC39YCR093W LPX1Q12405 387 aaKnown RBP1.33□□□□□ -2.2
CDC39YCR093W GDB1Q06625 1536 aa1.33□□□□□ -2.2
CDC39YCR093W YPK9Q12697 1472 aa1.33□□□□□ -2.2
CDC39YCR093W IMG2P25642 146 aaPredicted RBP1.32□□□□□ -2.2
CDC39YCR093W PTR3P43606 678 aa1.32□□□□□ -2.2
CDC39YCR093W ARC1P46672 376 aaKnown RBP1.32□□□□□ -2.2
CDC39YCR093W URB2P47108 1174 aa1.32□□□□□ -2.2
CDC39YCR093W INP52P50942 1183 aa1.32□□□□□ -2.2
CDC39YCR093W CTF4Q01454 927 aa1.32□□□□□ -2.2
CDC39YCR093W ECM9Q02202 377 aa1.32□□□□□ -2.2
CDC39YCR093W YDR109CQ04585 715 aa1.32□□□□□ -2.2
CDC39YCR093W SKG3Q06315 1026 aa1.32□□□□□ -2.2
CDC39YCR093W ETT1Q08421 412 aaKnown RBP1.32□□□□□ -2.2
CDC39YCR093W USV1Q12132 391 aa1.32□□□□□ -2.2
CDC39YCR093W RVB2Q12464 471 aaKnown RBP1.32□□□□□ -2.2
CDC39YCR093W SGS1P35187 1447 aa1.32□□□□□ -2.2
CDC39YCR093W MMS1Q06211 1407 aa1.32□□□□□ -2.2
Retrieved 100 of 5,963 RNA–protein pairs in 38.2 ms