RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 ZSCAN20P17040 1043 aaPredicted RBP14.89□□□□□ -0.03
LDLR-207ENST00000558013 FANCCQ00597 558 aa14.89□□□□□ -0.03
LDLR-207ENST00000558013 PDE4BQ07343 736 aa14.89□□□□□ -0.03
LDLR-207ENST00000558013 NR5A1Q13285 461 aa14.89□□□□□ -0.03
LDLR-207ENST00000558013 CHMP4CQ96CF2 233 aa14.89□□□□□ -0.03
LDLR-207ENST00000558013 PKNOX2Q96KN3 472 aa14.89□□□□□ -0.03
LDLR-207ENST00000558013 HPSEQ9Y251 543 aa14.89□□□□□ -0.03
LDLR-207ENST00000558013 SLC12A7Q9Y666 1083 aa14.89□□□□□ -0.03
LDLR-207ENST00000558013 hCG_1642624A0A1W2PR95 340 aa14.89□□□□□ -0.03
LDLR-207ENST00000558013 TMEM232C9JQI7 657 aa14.89□□□□□ -0.03
LDLR-207ENST00000558013 GRAMD1CQ8IYS0 662 aa14.89□□□□□ -0.03
LDLR-207ENST00000558013 LPIN2Q92539 896 aa14.89□□□□□ -0.03
LDLR-207ENST00000558013 OSBPL5Q9H0X9 879 aaPredicted RBP14.89□□□□□ -0.03
LDLR-207ENST00000558013 SLIT2O94813 1529 aa14.89□□□□□ -0.03
LDLR-207ENST00000558013 PATL2C9JE40 543 aaKnown RBP14.88□□□□□ -0.03
LDLR-207ENST00000558013 TOB1P50616 345 aaPredicted RBP14.88□□□□□ -0.03
LDLR-207ENST00000558013 ZNF827Q17R98 1081 aa14.88□□□□□ -0.03
LDLR-207ENST00000558013 PRDM4Q9UKN5 801 aa14.88□□□□□ -0.03
LDLR-207ENST00000558013 PCDHA5Q9Y5H7 936 aa14.88□□□□□ -0.03
LDLR-207ENST00000558013 NEMFO60524 1076 aa14.88□□□□□ -0.03
LDLR-207ENST00000558013 ADGRA1Q86SQ6 560 aa14.88□□□□□ -0.03
LDLR-207ENST00000558013 ZNF512BQ96KM6 892 aaPredicted RBP14.88□□□□□ -0.03
LDLR-207ENST00000558013 XIRP1Q702N8 1843 aaKnown RBP14.88□□□□□ -0.03
LDLR-207ENST00000558013 WDR19Q8NEZ3 1342 aa14.88□□□□□ -0.03
LDLR-207ENST00000558013 USP49Q70CQ1 688 aa14.88□□□□□ -0.03
LDLR-207ENST00000558013 PDILTQ8N807 584 aa14.88□□□□□ -0.03
LDLR-207ENST00000558013 OXER1Q8TDS5 423 aa14.88□□□□□ -0.03
LDLR-207ENST00000558013 FANCLQ9NW38 375 aa14.88□□□□□ -0.03
LDLR-207ENST00000558013 C4AP0C0L4 1744 aa14.87□□□□□ -0.03
LDLR-207ENST00000558013 C4BP0C0L5 1744 aa14.87□□□□□ -0.03
LDLR-207ENST00000558013 ABCC12Q96J65 1359 aa14.87□□□□□ -0.03
LDLR-207ENST00000558013 NUP133Q8WUM0 1156 aa14.87□□□□□ -0.03
LDLR-207ENST00000558013 SDR42E1Q8WUS8 393 aa14.87□□□□□ -0.03
LDLR-207ENST00000558013 ACSBG1Q96GR2 724 aa14.87□□□□□ -0.03
LDLR-207ENST00000558013 MPHOSPH8Q99549 860 aa14.87□□□□□ -0.03
LDLR-207ENST00000558013 KCNH3Q9ULD8 1083 aa14.87□□□□□ -0.03
LDLR-207ENST00000558013 SFPQP23246 707 aaKnown RBP eCLIP14.87□□□□□ -0.03
LDLR-207ENST00000558013 RESP18Q5W5W9 173 aa14.87□□□□□ -0.03
LDLR-207ENST00000558013 SYT10Q6XYQ8 523 aa14.87□□□□□ -0.03
LDLR-207ENST00000558013 ZNF34Q8IZ26 560 aa14.87□□□□□ -0.03
LDLR-207ENST00000558013 TMEM87BQ96K49 555 aa14.87□□□□□ -0.03
LDLR-207ENST00000558013 PPP1R13BQ96KQ4 1090 aa14.87□□□□□ -0.03
LDLR-207ENST00000558013 BPIFA3Q9BQP9 254 aa14.87□□□□□ -0.03
LDLR-207ENST00000558013 TUBE1Q9UJT0 475 aa14.87□□□□□ -0.03
LDLR-207ENST00000558013 ZHX1Q9UKY1 873 aaPredicted RBP14.87□□□□□ -0.03
LDLR-207ENST00000558013 SLC4A4Q9Y6R1 1079 aa14.87□□□□□ -0.03
LDLR-207ENST00000558013 MYH7P12883 1935 aa14.87□□□□□ -0.03
LDLR-207ENST00000558013 FAM205CA6NFA0 338 aa14.86□□□□□ -0.03
LDLR-207ENST00000558013 CDKL5O76039 1030 aa14.86□□□□□ -0.03
LDLR-207ENST00000558013 TDO2P48775 406 aa14.86□□□□□ -0.03
LDLR-207ENST00000558013 TRIM29Q14134 588 aa14.86□□□□□ -0.03
LDLR-207ENST00000558013 AKNAD1Q5T1N1 836 aa14.86□□□□□ -0.03
LDLR-207ENST00000558013 SGMS1Q86VZ5 419 aa14.86□□□□□ -0.03
LDLR-207ENST00000558013 DIS3L2Q8IYB7 885 aaKnown RBP14.86□□□□□ -0.03
LDLR-207ENST00000558013 BCL9O00512 1426 aa14.86□□□□□ -0.03
LDLR-207ENST00000558013 SERPINC1P01008 464 aa14.86□□□□□ -0.03
LDLR-207ENST00000558013 PRR29P0C7W0 189 aa14.86□□□□□ -0.03
LDLR-207ENST00000558013 SSRP1Q08945 709 aaKnown RBP14.86□□□□□ -0.03
LDLR-207ENST00000558013 MAP3K12Q12852 859 aa14.86□□□□□ -0.03
LDLR-207ENST00000558013 ELF2Q15723 593 aa14.86□□□□□ -0.03
LDLR-207ENST00000558013 CPLX2Q6PUV4 134 aaKnown RBP14.86□□□□□ -0.03
LDLR-207ENST00000558013 MFSD6Q6ZSS7 791 aa14.86□□□□□ -0.03
LDLR-207ENST00000558013 SMIM5Q71RC9 77 aa14.86□□□□□ -0.03
LDLR-207ENST00000558013 CNNM3Q8NE01 707 aa14.86□□□□□ -0.03
LDLR-207ENST00000558013 PCDHB6Q9Y5E3 794 aa14.86□□□□□ -0.03
LDLR-207ENST00000558013 CYP2D7A0A087X1C5 515 aa14.86□□□□□ -0.03
LDLR-207ENST00000558013 UQCRFS1P1P0C7P4 283 aa14.86□□□□□ -0.03
LDLR-207ENST00000558013 UBASH3AP57075 661 aa14.86□□□□□ -0.03
LDLR-207ENST00000558013 GSDMDP57764 484 aa14.86□□□□□ -0.03
LDLR-207ENST00000558013 EVX2Q03828 476 aa14.86□□□□□ -0.03
LDLR-207ENST00000558013 SMAP1Q8IYB5 467 aaPredicted RBP14.86□□□□□ -0.03
LDLR-207ENST00000558013 SHISA4Q96DD7 197 aa14.86□□□□□ -0.03
LDLR-207ENST00000558013 ATRNO75882 1429 aa14.85□□□□□ -0.03
LDLR-207ENST00000558013 MINDY4BA8MYZ0 360 aa14.85□□□□□ -0.03
LDLR-207ENST00000558013 PPP6R2O75170 966 aa14.85□□□□□ -0.03
LDLR-207ENST00000558013 CFAP100Q494V2 611 aa14.85□□□□□ -0.03
LDLR-207ENST00000558013 NOSTRINQ8IVI9 506 aa14.85□□□□□ -0.03
LDLR-207ENST00000558013 TRMT44Q8IYL2 757 aaKnown RBP14.85□□□□□ -0.03
LDLR-207ENST00000558013 ABCF2Q9UG63 623 aa14.85□□□□□ -0.03
LDLR-207ENST00000558013 TNKS1BP1Q9C0C2 1729 aaKnown RBP14.85□□□□□ -0.03
LDLR-207ENST00000558013 KRBA2Q6ZNG9 492 aa14.85□□□□□ -0.03
LDLR-207ENST00000558013 FANCGO15287 622 aa14.84□□□□□ -0.03
LDLR-207ENST00000558013 SLC5A1P13866 664 aa14.84□□□□□ -0.03
LDLR-207ENST00000558013 KMT5BQ4FZB7 885 aa14.84□□□□□ -0.03
LDLR-207ENST00000558013 INTS13Q9NVM9 706 aa14.84□□□□□ -0.03
LDLR-207ENST00000558013 LRP2BPQ9P2M1 347 aa14.84□□□□□ -0.03
LDLR-207ENST00000558013 DDX60Q8IY21 1712 aaKnown RBP14.84□□□□□ -0.03
LDLR-207ENST00000558013 POLR2DO15514 142 aaKnown RBP14.84□□□□□ -0.03
LDLR-207ENST00000558013 FMNL1O95466 1100 aaPredicted RBP14.84□□□□□ -0.03
LDLR-207ENST00000558013 LIFRP42702 1097 aa14.84□□□□□ -0.03
LDLR-207ENST00000558013 KIF18AQ8NI77 898 aa14.84□□□□□ -0.03
LDLR-207ENST00000558013 IMPACTQ9P2X3 320 aa14.84□□□□□ -0.03
LDLR-207ENST00000558013 MROH5Q6ZUA9 1318 aa14.84□□□□□ -0.03
LDLR-207ENST00000558013 PRDM1O75626 825 aa14.83□□□□□ -0.03
LDLR-207ENST00000558013 CASP1P29466 404 aa14.83□□□□□ -0.03
LDLR-207ENST00000558013 MYL5Q02045 173 aa14.83□□□□□ -0.03
LDLR-207ENST00000558013 FMR1Q06787 632 aaKnown RBP eCLIP14.83□□□□□ -0.036e-7■□□□□ 9.2
LDLR-207ENST00000558013 EXOC5O00471 708 aa14.83□□□□□ -0.04
LDLR-207ENST00000558013 MMP1P03956 469 aa14.83□□□□□ -0.04
LDLR-207ENST00000558013 KCNQ4P56696 695 aa14.83□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms