RNA–Protein interactions for RNA: ENST00000541286.5

SFSWAP-210, Transcript of splicing factor SWAP, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SFSWAP, Length 3,219 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-210ENST00000541286 TBC1D16Q8TBP0 767 aa16.67■□□□□ 0.26
SFSWAP-210ENST00000541286 LPIN2Q92539 896 aa16.67■□□□□ 0.26
SFSWAP-210ENST00000541286 NCOA5Q9HCD5 579 aaKnown RBP16.67■□□□□ 0.26
SFSWAP-210ENST00000541286 HMG20BQ9P0W2 317 aa16.67■□□□□ 0.26
SFSWAP-210ENST00000541286 MRVI1Q9Y6F6 885 aa16.67■□□□□ 0.26
SFSWAP-210ENST00000541286 IL17RAQ96F46 866 aa16.66■□□□□ 0.26
SFSWAP-210ENST00000541286 CBX8Q9HC52 389 aa16.66■□□□□ 0.26
SFSWAP-210ENST00000541286 USP27XA6NNY8 438 aa16.66■□□□□ 0.26
SFSWAP-210ENST00000541286 HOXA10P31260 410 aaPredicted RBP16.66■□□□□ 0.26
SFSWAP-210ENST00000541286 FUCA2Q9BTY2 467 aa16.66■□□□□ 0.26
SFSWAP-210ENST00000541286 SCAND2PQ9GZW5 306 aaPredicted RBP16.66■□□□□ 0.26
SFSWAP-210ENST00000541286 ZNF165P49910 485 aa16.66■□□□□ 0.26
SFSWAP-210ENST00000541286 AOC3Q16853 763 aa16.66■□□□□ 0.26
SFSWAP-210ENST00000541286 GTF3C6Q969F1 213 aa16.66■□□□□ 0.26
SFSWAP-210ENST00000541286 COL1A1P02452 1464 aaPredicted RBP16.65■□□□□ 0.26
SFSWAP-210ENST00000541286 SLC5A1P13866 664 aa16.65■□□□□ 0.26
SFSWAP-210ENST00000541286 APOBRQ0VD83 1088 aa16.65■□□□□ 0.26
SFSWAP-210ENST00000541286 CCDC158Q5M9N0 1113 aa16.65■□□□□ 0.26
SFSWAP-210ENST00000541286 DPP8Q6V1X1 898 aaPredicted RBP16.65■□□□□ 0.26
SFSWAP-210ENST00000541286 PAXIP1Q6ZW49 1069 aaPredicted RBP16.65■□□□□ 0.26
SFSWAP-210ENST00000541286 SLC16A10Q8TF71 515 aa16.65■□□□□ 0.26
SFSWAP-210ENST00000541286 STK11IPQ8N1F8 1099 aa16.64■□□□□ 0.26
SFSWAP-210ENST00000541286 ZNF215Q9UL58 517 aaPredicted RBP16.64■□□□□ 0.26
SFSWAP-210ENST00000541286 SCAF8Q9UPN6 1271 aaKnown RBP16.64■□□□□ 0.26
SFSWAP-210ENST00000541286 CTIFO43310 598 aaKnown RBP16.64■□□□□ 0.25
SFSWAP-210ENST00000541286 CYP21A2P08686 494 aa16.64■□□□□ 0.25
SFSWAP-210ENST00000541286 RASSF7Q02833 373 aa16.64■□□□□ 0.25
SFSWAP-210ENST00000541286 KMT5BQ4FZB7 885 aa16.64■□□□□ 0.25
SFSWAP-210ENST00000541286 TRIM34Q9BYJ4 488 aa16.64■□□□□ 0.25
SFSWAP-210ENST00000541286 SPON1Q9HCB6 807 aa16.64■□□□□ 0.25
SFSWAP-210ENST00000541286 PAG1Q9NWQ8 432 aa16.64■□□□□ 0.25
SFSWAP-210ENST00000541286 AKAP2Q9Y2D5 859 aa16.64■□□□□ 0.25
SFSWAP-210ENST00000541286 ATP6V0A2Q9Y487 856 aa16.64■□□□□ 0.25
SFSWAP-210ENST00000541286 TERF2Q15554 542 aa16.64■□□□□ 0.25
SFSWAP-210ENST00000541286 ELF2Q15723 593 aa16.64■□□□□ 0.25
SFSWAP-210ENST00000541286 FEZ1Q99689 392 aa16.64■□□□□ 0.25
SFSWAP-210ENST00000541286 RTL9Q8NET4 1388 aa16.64■□□□□ 0.25
SFSWAP-210ENST00000541286 GOLGA6L19H0YKK7 550 aa16.63■□□□□ 0.25
SFSWAP-210ENST00000541286 PRDX5P30044 214 aa16.63■□□□□ 0.25
SFSWAP-210ENST00000541286 HAND2P61296 217 aa16.63■□□□□ 0.25
SFSWAP-210ENST00000541286 TTLL6Q8N841 843 aa16.63■□□□□ 0.25
SFSWAP-210ENST00000541286 KIF18AQ8NI77 898 aa16.63■□□□□ 0.25
SFSWAP-210ENST00000541286 PGBD1Q96JS3 809 aa16.63■□□□□ 0.25
SFSWAP-210ENST00000541286 CRAMP1Q96RY5 1269 aa16.63■□□□□ 0.25
SFSWAP-210ENST00000541286 DDX41Q9UJV9 622 aaKnown RBP16.63■□□□□ 0.25
SFSWAP-210ENST00000541286 GGA1Q9UJY5 639 aa16.63■□□□□ 0.25
SFSWAP-210ENST00000541286 PCDHAC2Q9Y5I4 1007 aa16.63■□□□□ 0.25
SFSWAP-210ENST00000541286 SMIM22K7EJ46 135 aa16.63■□□□□ 0.25
SFSWAP-210ENST00000541286 FILIP1Q7Z7B0 1213 aa16.63■□□□□ 0.25
SFSWAP-210ENST00000541286 MIGA1Q8NAN2 632 aa16.63■□□□□ 0.25
SFSWAP-210ENST00000541286 TMX1Q9H3N1 280 aa16.63■□□□□ 0.25
SFSWAP-210ENST00000541286 RGL2O15211 777 aa16.62■□□□□ 0.25
SFSWAP-210ENST00000541286 ATP5JP18859 108 aa16.62■□□□□ 0.25
SFSWAP-210ENST00000541286 CHD4Q14839 1912 aa16.62■□□□□ 0.25
SFSWAP-210ENST00000541286 NRXN2Q9P2S2 1712 aa16.62■□□□□ 0.25
SFSWAP-210ENST00000541286 XDHP47989 1333 aa16.62■□□□□ 0.25
SFSWAP-210ENST00000541286 BBOX1O75936 387 aa16.62■□□□□ 0.25
SFSWAP-210ENST00000541286 OTUD7BQ6GQQ9 843 aa16.62■□□□□ 0.25
SFSWAP-210ENST00000541286 ADGRA1Q86SQ6 560 aa16.62■□□□□ 0.25
SFSWAP-210ENST00000541286 C10orf71Q711Q0 1435 aa16.62■□□□□ 0.25
SFSWAP-210ENST00000541286 BECN2A8MW95 431 aa16.62■□□□□ 0.25
SFSWAP-210ENST00000541286 ME1P48163 572 aa16.62■□□□□ 0.25
SFSWAP-210ENST00000541286 PRELPP51888 382 aa16.62■□□□□ 0.25
SFSWAP-210ENST00000541286 SPATA5Q8NB90 893 aa16.62■□□□□ 0.25
SFSWAP-210ENST00000541286 CACTINQ8WUQ7 758 aaKnown RBP16.62■□□□□ 0.25
SFSWAP-210ENST00000541286 POLR3GO15318 223 aaPredicted RBP16.61■□□□□ 0.25
SFSWAP-210ENST00000541286 HIBADHP31937 336 aaKnown RBP16.61■□□□□ 0.25
SFSWAP-210ENST00000541286 SCRN1Q12765 414 aa16.61■□□□□ 0.25
SFSWAP-210ENST00000541286 CCDC144BQ3MJ40 725 aa16.61■□□□□ 0.25
SFSWAP-210ENST00000541286 CCDC144CPQ8IYA2 1237 aa16.61■□□□□ 0.25
SFSWAP-210ENST00000541286 C7orf43Q8WVR3 580 aa16.61■□□□□ 0.25
SFSWAP-210ENST00000541286 DIXDC1Q155Q3 683 aa16.61■□□□□ 0.25
SFSWAP-210ENST00000541286 MCMDC2Q4G0Z9 681 aa16.61■□□□□ 0.25
SFSWAP-210ENST00000541286 HAUS7Q99871 368 aa16.61■□□□□ 0.25
SFSWAP-210ENST00000541286 CLIP2Q9UDT6 1046 aa16.61■□□□□ 0.25
SFSWAP-210ENST00000541286 LRP5O75197 1615 aa16.6■□□□□ 0.25
SFSWAP-210ENST00000541286 ALDH1B1P30837 517 aa16.6■□□□□ 0.25
SFSWAP-210ENST00000541286 ZNF384Q8TF68 577 aa16.6■□□□□ 0.25
SFSWAP-210ENST00000541286 GTF2IP78347 998 aa16.6■□□□□ 0.25
SFSWAP-210ENST00000541286 EVX2Q03828 476 aa16.6■□□□□ 0.25
SFSWAP-210ENST00000541286 TTLL5Q6EMB2 1281 aa16.6■□□□□ 0.25
SFSWAP-210ENST00000541286 IPO4Q8TEX9 1081 aaKnown RBP16.6■□□□□ 0.25
SFSWAP-210ENST00000541286 SYT17Q9BSW7 474 aa16.6■□□□□ 0.25
SFSWAP-210ENST00000541286 CAPN2P17655 700 aa16.6■□□□□ 0.25
SFSWAP-210ENST00000541286 KRT32Q14532 448 aa16.6■□□□□ 0.25
SFSWAP-210ENST00000541286 CEP135Q66GS9 1140 aa16.6■□□□□ 0.25
SFSWAP-210ENST00000541286 CCAR1Q8IX12 1150 aaKnown RBP16.6■□□□□ 0.25
SFSWAP-210ENST00000541286 SP8Q8IXZ3 490 aa16.6■□□□□ 0.25
SFSWAP-210ENST00000541286 TIGD1Q96MW7 591 aa16.6■□□□□ 0.25
SFSWAP-210ENST00000541286 DDX19AQ9NUU7 478 aaKnown RBP16.6■□□□□ 0.25
SFSWAP-210ENST00000541286 ZSCAN25Q6NSZ9 544 aa16.59■□□□□ 0.25
SFSWAP-210ENST00000541286 FBXO38Q6PIJ6 1188 aa16.59■□□□□ 0.25
SFSWAP-210ENST00000541286 PUS7LQ9H0K6 701 aaKnown RBP16.59■□□□□ 0.25
SFSWAP-210ENST00000541286 GPHNQ9NQX3 736 aaPredicted RBP16.59■□□□□ 0.25
SFSWAP-210ENST00000541286 PIM2Q9P1W9 311 aa16.59■□□□□ 0.25
SFSWAP-210ENST00000541286 RAD17O75943 681 aa16.59■□□□□ 0.25
SFSWAP-210ENST00000541286 UBE4AQ14139 1066 aa16.59■□□□□ 0.25
SFSWAP-210ENST00000541286 CAVIN4Q5BKX8 364 aa16.59■□□□□ 0.25
SFSWAP-210ENST00000541286 STOX1Q6ZVD7 989 aa16.59■□□□□ 0.25
SFSWAP-210ENST00000541286 KCNB2Q92953 911 aa16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 88 ms