RNA–Protein interactions for RNA: ENST00000504489.3

PDLIM5-208, Transcript of PDZ and LIM domain 5, humanhuman

TSL 4 BASIC

Gene PDLIM5, Length 538 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-208ENST00000504489 CNTNAP1P78357 1384 aa14.37□□□□□ -0.11
PDLIM5-208ENST00000504489 SIPA1L1O43166 1804 aa14.37□□□□□ -0.11
PDLIM5-208ENST00000504489 TRIM6-TRIM34B2RNG4 842 aa14.37□□□□□ -0.11
PDLIM5-208ENST00000504489 TCP10L2B9ZVM9 353 aa14.37□□□□□ -0.11
PDLIM5-208ENST00000504489 TRAF5O00463 557 aa14.37□□□□□ -0.11
PDLIM5-208ENST00000504489 RNF113AO15541 343 aaKnown RBP14.37□□□□□ -0.11
PDLIM5-208ENST00000504489 WDHD1O75717 1129 aaPredicted RBP14.37□□□□□ -0.11
PDLIM5-208ENST00000504489 CACNB3P54284 484 aa14.37□□□□□ -0.11
PDLIM5-208ENST00000504489 RASA3Q14644 834 aa14.37□□□□□ -0.11
PDLIM5-208ENST00000504489 MIGA1Q8NAN2 632 aa14.37□□□□□ -0.11
PDLIM5-208ENST00000504489 RIOK1Q9BRS2 568 aaKnown RBP14.37□□□□□ -0.11
PDLIM5-208ENST00000504489 FSD1Q9BTV5 496 aa14.37□□□□□ -0.11
PDLIM5-208ENST00000504489 SCAF8Q9UPN6 1271 aaKnown RBP14.37□□□□□ -0.11
PDLIM5-208ENST00000504489 PAPPA2Q9BXP8 1791 aa14.37□□□□□ -0.11
PDLIM5-208ENST00000504489 OTOFQ9HC10 1997 aa14.36□□□□□ -0.11
PDLIM5-208ENST00000504489 ATAD5Q96QE3 1844 aa14.36□□□□□ -0.11
PDLIM5-208ENST00000504489 MAGEB6P1A0A0J9YX57 407 aa14.36□□□□□ -0.11
PDLIM5-208ENST00000504489 ENTPD3O75355 529 aa14.36□□□□□ -0.11
PDLIM5-208ENST00000504489 NUBP1P53384 320 aa14.36□□□□□ -0.11
PDLIM5-208ENST00000504489 DYNLL1P63167 89 aaKnown RBP14.36□□□□□ -0.11
PDLIM5-208ENST00000504489 NFIAQ12857 509 aa14.36□□□□□ -0.11
PDLIM5-208ENST00000504489 SLFNL1Q499Z3 407 aa14.36□□□□□ -0.11
PDLIM5-208ENST00000504489 TEX11Q8IYF3 940 aa14.36□□□□□ -0.11
PDLIM5-208ENST00000504489 SH3RF3Q8TEJ3 882 aaPredicted RBP14.36□□□□□ -0.11
PDLIM5-208ENST00000504489 FAM151AQ8WW52 585 aa14.36□□□□□ -0.11
PDLIM5-208ENST00000504489 APPBP2Q92624 585 aa14.36□□□□□ -0.11
PDLIM5-208ENST00000504489 RILPL2Q969X0 211 aa14.36□□□□□ -0.11
PDLIM5-208ENST00000504489 FAM198AQ9UFP1 575 aa14.36□□□□□ -0.11
PDLIM5-208ENST00000504489 LAMB1P07942 1786 aa14.36□□□□□ -0.11
PDLIM5-208ENST00000504489 RPAP1Q9BWH6 1393 aaPredicted RBP14.35□□□□□ -0.11
PDLIM5-208ENST00000504489 CHGBP05060 677 aa14.35□□□□□ -0.11
PDLIM5-208ENST00000504489 GSPT1P15170 499 aaKnown RBP14.35□□□□□ -0.11
PDLIM5-208ENST00000504489 RGS3P49796 1198 aa14.35□□□□□ -0.11
PDLIM5-208ENST00000504489 FMR1Q06787 632 aaKnown RBP eCLIP14.35□□□□□ -0.11
PDLIM5-208ENST00000504489 DLK2Q6UY11 383 aa14.35□□□□□ -0.11
PDLIM5-208ENST00000504489 CDCA5Q96FF9 252 aa14.35□□□□□ -0.11
PDLIM5-208ENST00000504489 COL2A1P02458 1487 aaPredicted RBP14.35□□□□□ -0.11
PDLIM5-208ENST00000504489 SUPT20HL1Q3ZLR7 823 aa14.34□□□□□ -0.11
PDLIM5-208ENST00000504489 ZMYM1Q5SVZ6 1142 aa14.34□□□□□ -0.11
PDLIM5-208ENST00000504489 CST9Q5W186 159 aa14.34□□□□□ -0.11
PDLIM5-208ENST00000504489 SKAP1Q86WV1 359 aa14.34□□□□□ -0.11
PDLIM5-208ENST00000504489 TEPSINQ96N21 525 aa14.34□□□□□ -0.11
PDLIM5-208ENST00000504489 TMEM39BQ9GZU3 492 aa14.34□□□□□ -0.11
PDLIM5-208ENST00000504489 PUS7LQ9H0K6 701 aaKnown RBP14.34□□□□□ -0.11
PDLIM5-208ENST00000504489 DDX4Q9NQI0 724 aaKnown RBP14.34□□□□□ -0.11
PDLIM5-208ENST00000504489 MBD4O95243 580 aa14.33□□□□□ -0.12
PDLIM5-208ENST00000504489 SDSP20132 328 aa14.33□□□□□ -0.12
PDLIM5-208ENST00000504489 APLP1P51693 650 aa14.33□□□□□ -0.12
PDLIM5-208ENST00000504489 TCP10Q12799 353 aa14.33□□□□□ -0.12
PDLIM5-208ENST00000504489 PRAMEF18Q5VWM3 479 aa14.33□□□□□ -0.12
PDLIM5-208ENST00000504489 OSBP2Q969R2 916 aa14.33□□□□□ -0.12
PDLIM5-208ENST00000504489 CRNKL1Q9BZJ0 848 aaKnown RBP14.33□□□□□ -0.12
PDLIM5-208ENST00000504489 ATRNL1Q5VV63 1379 aa14.33□□□□□ -0.12
PDLIM5-208ENST00000504489 SSC5DA1L4H1 1573 aa14.32□□□□□ -0.12
PDLIM5-208ENST00000504489 HIP1O00291 1037 aa14.32□□□□□ -0.12
PDLIM5-208ENST00000504489 CELF2O95319 508 aaKnown RBP14.32□□□□□ -0.12
PDLIM5-208ENST00000504489 NF2P35240 595 aa14.32□□□□□ -0.12
PDLIM5-208ENST00000504489 PICALMQ13492 652 aa14.32□□□□□ -0.12
PDLIM5-208ENST00000504489 NBPF12Q5TAG4 269 aaPredicted RBP14.32□□□□□ -0.12
PDLIM5-208ENST00000504489 ZFPM1Q8IX07 1006 aa14.32□□□□□ -0.12
PDLIM5-208ENST00000504489 LCORLQ8N3X6 602 aa14.32□□□□□ -0.12
PDLIM5-208ENST00000504489 TGFBRAP1Q8WUH2 860 aa14.32□□□□□ -0.12
PDLIM5-208ENST00000504489 AIDAQ96BJ3 306 aa14.32□□□□□ -0.12
PDLIM5-208ENST00000504489 HOOK2Q96ED9 719 aa14.32□□□□□ -0.12
PDLIM5-208ENST00000504489 MS4A3Q96HJ5 214 aa14.32□□□□□ -0.12
PDLIM5-208ENST00000504489 STRBPQ96SI9 672 aaKnown RBP14.32□□□□□ -0.12
PDLIM5-208ENST00000504489 OSBPL5Q9H0X9 879 aaPredicted RBP14.32□□□□□ -0.12
PDLIM5-208ENST00000504489 ARMT1Q9H993 441 aa14.32□□□□□ -0.12
PDLIM5-208ENST00000504489 HELLSQ9NRZ9 838 aa14.32□□□□□ -0.12
PDLIM5-208ENST00000504489 TMEM88BA6NKF7 163 aa14.31□□□□□ -0.12
PDLIM5-208ENST00000504489 USP5P45974 858 aa14.31□□□□□ -0.12
PDLIM5-208ENST00000504489 FKBP1BP68106 108 aa14.31□□□□□ -0.12
PDLIM5-208ENST00000504489 BMP2KLQ5H9B9 411 aa14.31□□□□□ -0.12
PDLIM5-208ENST00000504489 FAM212AQ96EL1 285 aa14.31□□□□□ -0.12
PDLIM5-208ENST00000504489 ZNF408Q9H9D4 720 aa14.31□□□□□ -0.12
PDLIM5-208ENST00000504489 GBA2Q9HCG7 927 aaPredicted RBP14.31□□□□□ -0.12
PDLIM5-208ENST00000504489 MKRN1Q9UHC7 482 aaKnown RBP14.31□□□□□ -0.12
PDLIM5-208ENST00000504489 FLT1P17948 1338 aa14.31□□□□□ -0.12
PDLIM5-208ENST00000504489 DOCK1Q14185 1865 aa14.31□□□□□ -0.12
PDLIM5-208ENST00000504489 LAMA4Q16363 1823 aa14.3□□□□□ -0.12
PDLIM5-208ENST00000504489 M0R2C6 588 aa14.3□□□□□ -0.12
PDLIM5-208ENST00000504489 GPAA1O43292 621 aa14.3□□□□□ -0.12
PDLIM5-208ENST00000504489 HSPA6P17066 643 aa14.3□□□□□ -0.12
PDLIM5-208ENST00000504489 SH3BP5LQ7L8J4 393 aa14.3□□□□□ -0.12
PDLIM5-208ENST00000504489 MAPKAPK5Q8IW41 473 aa14.3□□□□□ -0.12
PDLIM5-208ENST00000504489 CDAN1Q8IWY9 1227 aa14.3□□□□□ -0.12
PDLIM5-208ENST00000504489 C2orf69Q8N8R5 385 aa14.3□□□□□ -0.12
PDLIM5-208ENST00000504489 SEC62Q99442 399 aaKnown RBP14.3□□□□□ -0.12
PDLIM5-208ENST00000504489 DHX36Q9H2U1 1008 aaKnown RBP14.3□□□□□ -0.12
PDLIM5-208ENST00000504489 ATP8A2Q9NTI2 1148 aa14.3□□□□□ -0.12
PDLIM5-208ENST00000504489 PHIPQ8WWQ0 1821 aa14.29□□□□□ -0.12
PDLIM5-208ENST00000504489 A0A0D9SFI3 127 aa14.29□□□□□ -0.12
PDLIM5-208ENST00000504489 DDTLA6NHG4 134 aaPredicted RBP14.29□□□□□ -0.12
PDLIM5-208ENST00000504489 PPP1R12BO60237 982 aaPredicted RBP14.29□□□□□ -0.12
PDLIM5-208ENST00000504489 GNAT2P19087 354 aa14.29□□□□□ -0.12
PDLIM5-208ENST00000504489 MAP3K10Q02779 954 aa14.29□□□□□ -0.12
PDLIM5-208ENST00000504489 NMIQ13287 307 aaPredicted RBP14.29□□□□□ -0.12
PDLIM5-208ENST00000504489 MCMDC2Q4G0Z9 681 aa14.29□□□□□ -0.12
PDLIM5-208ENST00000504489 ZSCAN29Q8IWY8 852 aaPredicted RBP14.29□□□□□ -0.12
PDLIM5-208ENST00000504489 SDR42E1Q8WUS8 393 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms