RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 ZNF532Q9HCE3 1301 aa18.64■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 IRS4O14654 1257 aaPredicted RBP18.64■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 PDE8BO95263 885 aa18.64■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 CDC27P30260 824 aa18.64■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 PHKA1P46020 1223 aa18.64■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 NCBP1Q09161 790 aaKnown RBP18.64■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 TRDNQ13061 729 aa18.64■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 SF3B2Q13435 895 aaKnown RBP18.64■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 PDCL2Q8N4E4 241 aa18.64■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 OSBPL5Q9H0X9 879 aaPredicted RBP18.64■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 SLC3A2P08195 630 aaKnown RBP18.63■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 PDE6AP16499 860 aa18.63■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 ARID4AP29374 1257 aaPredicted RBP18.63■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 NLRP12P59046 1061 aa18.63■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 SYCP1Q15431 976 aa18.63■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 CCDC102BQ68D86 513 aa18.63■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 ALG1Q9BT22 464 aa18.63■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 PDGFDQ9GZP0 370 aaPredicted RBP18.63■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 WWC3Q9ULE0 1092 aa18.63■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 IDH1O75874 414 aaKnown RBP18.62■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 RXRAP19793 462 aa18.62■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 METAP2P50579 478 aaKnown RBP eCLIP18.62■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 NCAPHQ15003 741 aa18.62■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 CEP135Q66GS9 1140 aa18.62■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 APOA5Q6Q788 366 aa18.62■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 IGDCC4Q8TDY8 1250 aa18.62■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 KCND1Q9NSA2 647 aa18.62■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 SRP68Q9UHB9 627 aaKnown RBP18.62■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 B4E1Z4 1266 aa18.62■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 MARCKSP29966 332 aaPredicted RBP18.62■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 NTRK3Q16288 839 aa18.62■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 KRT40Q6A162 431 aa18.62■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 CAMKK2Q96RR4 588 aa18.62■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 BIN1O00499 593 aa18.61■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 PTPAQ15257 358 aa18.61■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 VPS37DQ86XT2 251 aa18.61■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 STRBPQ96SI9 672 aaKnown RBP18.61■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 FAM217BQ9NTX9 383 aaPredicted RBP18.61■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 HPSEQ9Y251 543 aa18.61■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 ARAP2Q8WZ64 1704 aa18.61■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 APPP05067 770 aa18.61■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 CCAR2Q8N163 923 aaKnown RBP18.61■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 PHKBQ93100 1093 aa18.61■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 AK7Q96M32 723 aa18.61■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 XPO4Q9C0E2 1151 aaKnown RBP18.61■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 INCENPQ9NQS7 918 aa18.61■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 IMPACTQ9P2X3 320 aa18.61■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 LRP5O75197 1615 aa18.6■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 PLSCR1O15162 318 aa18.6■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 FGFR2P21802 821 aa18.6■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 GSDMDP57764 484 aa18.6■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 CCDC112Q8NEF3 446 aa18.6■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 UPF1Q92900 1129 aaKnown RBP eCLIP18.6■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 TIGD1Q96MW7 591 aa18.6■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 MAP3K14Q99558 947 aa18.6■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 LY9Q9HBG7 655 aa18.6■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 TRMT112Q9UI30 125 aaKnown RBP18.6■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 TACC3Q9Y6A5 838 aa18.6■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 CHD4Q14839 1912 aa18.6■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 DOCK2Q92608 1830 aa18.6■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 RANBP6O60518 1105 aaKnown RBP18.59■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 PDE8AO60658 829 aa18.59■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 NAA30Q147X3 362 aaPredicted RBP18.59■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 ALX1Q15699 326 aa18.59■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 SHC4Q6S5L8 630 aa18.59■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 TMEM87BQ96K49 555 aa18.59■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 IFNKQ9P0W0 207 aa18.59■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 FAM237AA0A1B0GTK4 181 aa18.59■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 PPP6R2O75170 966 aa18.59■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 CDKL5O76039 1030 aa18.59■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 UQCRFS1P1P0C7P4 283 aa18.59■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 SGMS1Q86VZ5 419 aa18.59■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 DZIP3Q86Y13 1208 aaKnown RBP18.59■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 HSD3B7Q9H2F3 369 aa18.59■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 EPB41L4AQ9HCS5 686 aaPredicted RBP18.59■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 TUBE1Q9UJT0 475 aa18.59■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 ZHX1Q9UKY1 873 aaPredicted RBP18.59■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 PTPN14Q15678 1187 aa18.58■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 ZRSR1Q15695 479 aaKnown RBP18.58■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 BICDL1Q6ZP65 573 aa18.58■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 MICU3Q86XE3 530 aa18.58■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 TFCP2L1Q9NZI6 479 aa18.58■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 UBN2Q6ZU65 1347 aa18.58■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 UBE2Q2LH0YL09 131 aa18.58■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 ZBTB43O43298 467 aa18.58■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 KIF20AO95235 890 aa18.58■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 U2AF2P26368 475 aaKnown RBP eCLIP18.58■□□□□ 0.561e-7■■■■□ 22.9
MSH5-SAPCD1-208ENST00000498473 EIF5P55010 431 aaKnown RBP18.58■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 ARMCX5Q6P1M9 558 aa18.58■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 HELBQ8NG08 1087 aaPredicted RBP18.58■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 ZNF592Q92610 1267 aa18.58■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 TRMT1Q9NXH9 659 aaKnown RBP18.58■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.57■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 SYKP43405 635 aa18.57■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 BAG6P46379 1132 aa18.57■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 CBX1P83916 185 aa18.57■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 PUM3Q15397 648 aaKnown RBP18.57■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 LPIN2Q92539 896 aa18.57■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 MYL10Q9BUA6 226 aa18.57■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 PATL2C9JE40 543 aaKnown RBP18.57■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms