RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 GTF3C5Q9Y5Q8 519 aaPredicted RBP15.23■□□□□ 0.03
USP40-214ENST00000483519 A0A087WZG4 1122 aa15.22■□□□□ 0.03
USP40-214ENST00000483519 IFIT1P09914 478 aaKnown RBP15.22■□□□□ 0.03
USP40-214ENST00000483519 HNRNPLLQ8WVV9 542 aaKnown RBP15.22■□□□□ 0.03
USP40-214ENST00000483519 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.22■□□□□ 0.03
USP40-214ENST00000483519 M0R2C6 588 aa15.22■□□□□ 0.03
USP40-214ENST00000483519 MYO1CO00159 1063 aa15.22■□□□□ 0.03
USP40-214ENST00000483519 MAP2K7O14733 419 aa15.22■□□□□ 0.03
USP40-214ENST00000483519 ACTN2P35609 894 aa15.22■□□□□ 0.03
USP40-214ENST00000483519 TUBB4BP68371 445 aa15.22■□□□□ 0.03
USP40-214ENST00000483519 LEKR1Q6ZMV7 388 aa15.22■□□□□ 0.03
USP40-214ENST00000483519 RALYLQ86SE5 291 aaKnown RBP15.22■□□□□ 0.03
USP40-214ENST00000483519 TC2NQ8N9U0 490 aa15.22■□□□□ 0.03
USP40-214ENST00000483519 NFATC2IPQ8NCF5 419 aa15.22■□□□□ 0.03
USP40-214ENST00000483519 CNNM3Q8NE01 707 aa15.22■□□□□ 0.03
USP40-214ENST00000483519 GJB4Q9NTQ9 266 aa15.22■□□□□ 0.03
USP40-214ENST00000483519 DACH1Q9UI36 760 aa15.22■□□□□ 0.03
USP40-214ENST00000483519 WDR19Q8NEZ3 1342 aa15.21■□□□□ 0.03
USP40-214ENST00000483519 BCL9LQ86UU0 1499 aa15.21■□□□□ 0.03
USP40-214ENST00000483519 EIF3JO75822 258 aaKnown RBP15.21■□□□□ 0.03
USP40-214ENST00000483519 IVLP07476 585 aa15.21■□□□□ 0.03
USP40-214ENST00000483519 CSB-PGBD3P0DP91 1061 aa15.21■□□□□ 0.03
USP40-214ENST00000483519 CHMP4BP1P59074 171 aa15.21■□□□□ 0.03
USP40-214ENST00000483519 VPS72Q15906 364 aa15.21■□□□□ 0.03
USP40-214ENST00000483519 METTL16Q86W50 562 aaKnown RBP15.21■□□□□ 0.03
USP40-214ENST00000483519 VPS37DQ86XT2 251 aa15.21■□□□□ 0.03
USP40-214ENST00000483519 MB21D2Q8IYB1 491 aaPredicted RBP15.21■□□□□ 0.03
USP40-214ENST00000483519 NCOA7Q8NI08 942 aa15.21■□□□□ 0.03
USP40-214ENST00000483519 EFCC1Q9HA90 598 aa15.21■□□□□ 0.03
USP40-214ENST00000483519 CUTAO60888 179 aa15.21■□□□□ 0.02
USP40-214ENST00000483519 ERLIN1O75477 346 aa15.21■□□□□ 0.02
USP40-214ENST00000483519 CDKL5O76039 1030 aa15.21■□□□□ 0.02
USP40-214ENST00000483519 CCDC175P0C221 793 aa15.21■□□□□ 0.02
USP40-214ENST00000483519 LMBR1LQ6UX01 489 aa15.21■□□□□ 0.02
USP40-214ENST00000483519 SRGAP1Q7Z6B7 1085 aa15.21■□□□□ 0.02
USP40-214ENST00000483519 ELOA2Q8IYF1 753 aaPredicted RBP15.21■□□□□ 0.02
USP40-214ENST00000483519 MSL3Q8N5Y2 521 aaKnown RBP15.21■□□□□ 0.02
USP40-214ENST00000483519 STRN4Q9NRL3 753 aa15.21■□□□□ 0.02
USP40-214ENST00000483519 AXIN2Q9Y2T1 843 aa15.21■□□□□ 0.02
USP40-214ENST00000483519 DDX60Q8IY21 1712 aaKnown RBP15.21■□□□□ 0.02
USP40-214ENST00000483519 PTPAQ15257 358 aa15.2■□□□□ 0.02
USP40-214ENST00000483519 HDXQ7Z353 690 aa15.2■□□□□ 0.02
USP40-214ENST00000483519 CEP112Q8N8E3 955 aa15.2■□□□□ 0.02
USP40-214ENST00000483519 ALG1Q9BT22 464 aa15.2■□□□□ 0.02
USP40-214ENST00000483519 PCDHA5Q9Y5H7 936 aa15.2■□□□□ 0.02
USP40-214ENST00000483519 WDR17Q8IZU2 1322 aa15.2■□□□□ 0.02
USP40-214ENST00000483519 C4AP0C0L4 1744 aa15.2■□□□□ 0.02
USP40-214ENST00000483519 C4BP0C0L5 1744 aa15.2■□□□□ 0.02
USP40-214ENST00000483519 COL5A2P05997 1499 aaPredicted RBP15.2■□□□□ 0.02
USP40-214ENST00000483519 H3BQF6 201 aa15.2■□□□□ 0.02
USP40-214ENST00000483519 IL15P40933 162 aaPredicted RBP15.2■□□□□ 0.02
USP40-214ENST00000483519 MAPK8IP2Q13387 824 aaPredicted RBP15.2■□□□□ 0.02
USP40-214ENST00000483519 SLC39A6Q13433 755 aa15.2■□□□□ 0.02
USP40-214ENST00000483519 TUBB2AQ13885 445 aa15.2■□□□□ 0.02
USP40-214ENST00000483519 PTPN21Q16825 1174 aa15.2■□□□□ 0.02
USP40-214ENST00000483519 SRLQ86TD4 932 aa15.2■□□□□ 0.02
USP40-214ENST00000483519 TUBB2BQ9BVA1 445 aa15.2■□□□□ 0.02
USP40-214ENST00000483519 KCNH3Q9ULD8 1083 aa15.2■□□□□ 0.02
USP40-214ENST00000483519 ARFGEF2Q9Y6D5 1785 aa15.19■□□□□ 0.02
USP40-214ENST00000483519 ADKP55263 362 aaKnown RBP15.19■□□□□ 0.02
USP40-214ENST00000483519 HAND2P61296 217 aa15.19■□□□□ 0.02
USP40-214ENST00000483519 TIMM10P62072 90 aa15.19■□□□□ 0.02
USP40-214ENST00000483519 ATG9AQ7Z3C6 839 aa15.19■□□□□ 0.02
USP40-214ENST00000483519 C10orf67Q8IYJ2 551 aa15.19■□□□□ 0.02
USP40-214ENST00000483519 PPIL4Q8WUA2 492 aaKnown RBP eCLIP15.19■□□□□ 0.02
USP40-214ENST00000483519 QTRT2Q9H974 415 aaKnown RBP15.19■□□□□ 0.02
USP40-214ENST00000483519 EIF4ENIF1Q9NRA8 985 aaKnown RBP15.19■□□□□ 0.02
USP40-214ENST00000483519 NRAPQ86VF7 1730 aa15.19■□□□□ 0.02
USP40-214ENST00000483519 ZFYP08048 801 aaPredicted RBP15.19■□□□□ 0.02
USP40-214ENST00000483519 GYS2P54840 703 aa15.19■□□□□ 0.02
USP40-214ENST00000483519 KARSQ15046 597 aaKnown RBP15.19■□□□□ 0.02
USP40-214ENST00000483519 LONRF3Q496Y0 759 aa15.19■□□□□ 0.02
USP40-214ENST00000483519 CPLX2Q6PUV4 134 aaKnown RBP15.19■□□□□ 0.02
USP40-214ENST00000483519 OSBP2Q969R2 916 aa15.19■□□□□ 0.02
USP40-214ENST00000483519 RSPH14Q9UHP6 348 aa15.19■□□□□ 0.02
USP40-214ENST00000483519 ZMYM6O95789 1325 aa15.19■□□□□ 0.02
USP40-214ENST00000483519 MAP3K15Q6ZN16 1313 aa15.19■□□□□ 0.02
USP40-214ENST00000483519 ZNF18P17022 549 aa15.18■□□□□ 0.02
USP40-214ENST00000483519 USP5P45974 858 aa15.18■□□□□ 0.02
USP40-214ENST00000483519 CASP7P55210 303 aa15.18■□□□□ 0.02
USP40-214ENST00000483519 MLKLQ8NB16 471 aa15.18■□□□□ 0.02
USP40-214ENST00000483519 MAP3K14Q99558 947 aa15.18■□□□□ 0.02
USP40-214ENST00000483519 SLC52A2Q9HAB3 445 aa15.18■□□□□ 0.02
USP40-214ENST00000483519 RAI14Q9P0K7 980 aa15.18■□□□□ 0.02
USP40-214ENST00000483519 RRP15Q9Y3B9 282 aaKnown RBP15.18■□□□□ 0.02
USP40-214ENST00000483519 NFE2L3Q9Y4A8 694 aa15.18■□□□□ 0.02
USP40-214ENST00000483519 ATRNO75882 1429 aa15.18■□□□□ 0.02
USP40-214ENST00000483519 ATP5J2-PTCD1G3V325 749 aa15.18■□□□□ 0.02
USP40-214ENST00000483519 KIF5CO60282 957 aa15.18■□□□□ 0.02
USP40-214ENST00000483519 PTCD1O75127 700 aaKnown RBP15.18■□□□□ 0.02
USP40-214ENST00000483519 PDE4BQ07343 736 aa15.18■□□□□ 0.02
USP40-214ENST00000483519 NOM1Q5C9Z4 860 aaKnown RBP15.18■□□□□ 0.02
USP40-214ENST00000483519 KRT40Q6A162 431 aa15.18■□□□□ 0.02
USP40-214ENST00000483519 CTR9Q6PD62 1173 aa15.18■□□□□ 0.02
USP40-214ENST00000483519 TOM1L2Q6ZVM7 507 aa15.18■□□□□ 0.02
USP40-214ENST00000483519 LRP10Q7Z4F1 713 aa15.18■□□□□ 0.02
USP40-214ENST00000483519 RAB11FIP4Q86YS3 637 aa15.18■□□□□ 0.02
USP40-214ENST00000483519 GOLGA6L1Q8N7Z2 621 aa15.18■□□□□ 0.02
USP40-214ENST00000483519 ENOX1Q8TC92 643 aaKnown RBP15.18■□□□□ 0.02
USP40-214ENST00000483519 DESI2Q9BSY9 194 aa15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms