RNA–Protein interactions for RNA: ENST00000434813.3

CLK1-205, Transcript of CDC like kinase 1, humanhuman

TSL 2 BASIC

Gene CLK1, Length 2,026 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-205ENST00000434813 CLIP2Q9UDT6 1046 aa21.57■■□□□ 1.04
CLK1-205ENST00000434813 CNTNAP4Q9C0A0 1308 aa21.57■■□□□ 1.04
CLK1-205ENST00000434813 NHSQ6T4R5 1651 aa21.57■■□□□ 1.04
CLK1-205ENST00000434813 CHRNDQ07001 517 aa21.56■■□□□ 1.04
CLK1-205ENST00000434813 SLC39A14Q15043 492 aa21.56■■□□□ 1.04
CLK1-205ENST00000434813 LCORLQ8N3X6 602 aa21.56■■□□□ 1.04
CLK1-205ENST00000434813 STAG1Q8WVM7 1258 aa21.56■■□□□ 1.04
CLK1-205ENST00000434813 NAT10Q9H0A0 1025 aaKnown RBP21.56■■□□□ 1.04
CLK1-205ENST00000434813 FAM217BQ9NTX9 383 aaPredicted RBP21.56■■□□□ 1.04
CLK1-205ENST00000434813 ZSWIM5Q9P217 1185 aa21.56■■□□□ 1.04
CLK1-205ENST00000434813 BECN2A8MW95 431 aa21.56■■□□□ 1.04
CLK1-205ENST00000434813 RANBP6O60518 1105 aaKnown RBP21.56■■□□□ 1.04
CLK1-205ENST00000434813 CMA1P23946 247 aa21.56■■□□□ 1.04
CLK1-205ENST00000434813 IARSP41252 1262 aaKnown RBP21.56■■□□□ 1.04
CLK1-205ENST00000434813 PHKBQ93100 1093 aa21.56■■□□□ 1.04
CLK1-205ENST00000434813 TACC3Q9Y6A5 838 aa21.56■■□□□ 1.04
CLK1-205ENST00000434813 IFIT3O14879 490 aaKnown RBP21.55■■□□□ 1.04
CLK1-205ENST00000434813 MTA3Q9BTC8 594 aa21.55■■□□□ 1.04
CLK1-205ENST00000434813 NRBP1Q9UHY1 535 aa21.55■■□□□ 1.04
CLK1-205ENST00000434813 CCNL1Q9UK58 526 aaPredicted RBP21.55■■□□□ 1.04
CLK1-205ENST00000434813 SLC12A7Q9Y666 1083 aa21.55■■□□□ 1.04
CLK1-205ENST00000434813 ZNF804BA4D1E1 1349 aa21.55■■□□□ 1.04
CLK1-205ENST00000434813 TDO2P48775 406 aa21.55■■□□□ 1.04
CLK1-205ENST00000434813 CLEC4GQ6UXB4 293 aa21.55■■□□□ 1.04
CLK1-205ENST00000434813 MFSD6Q6ZSS7 791 aa21.55■■□□□ 1.04
CLK1-205ENST00000434813 CDC5LQ99459 802 aaKnown RBP21.55■■□□□ 1.04
CLK1-205ENST00000434813 INCENPQ9NQS7 918 aa21.55■■□□□ 1.04
CLK1-205ENST00000434813 KIAA1468Q9P260 1216 aa21.55■■□□□ 1.04
CLK1-205ENST00000434813 BTAF1O14981 1849 aa21.55■■□□□ 1.04
CLK1-205ENST00000434813 MROH7-TTC4A0A0A0MT08 1334 aa21.54■■□□□ 1.04
CLK1-205ENST00000434813 CASZ1Q86V15 1759 aa21.54■■□□□ 1.04
CLK1-205ENST00000434813 CCDC69A6NI79 296 aa21.54■■□□□ 1.04
CLK1-205ENST00000434813 U2AF2P26368 475 aaKnown RBP eCLIP21.54■■□□□ 1.049e-7■■■□□ 14.9
CLK1-205ENST00000434813 SLC4A4Q9Y6R1 1079 aa21.54■■□□□ 1.04
CLK1-205ENST00000434813 SCN7AQ01118 1682 aa21.53■■□□□ 1.04
CLK1-205ENST00000434813 PRKAB2O43741 272 aa21.53■■□□□ 1.04
CLK1-205ENST00000434813 PPP6R2O75170 966 aa21.53■■□□□ 1.04
CLK1-205ENST00000434813 PFKFB1P16118 471 aa21.53■■□□□ 1.04
CLK1-205ENST00000434813 TRIM29Q14134 588 aa21.53■■□□□ 1.04
CLK1-205ENST00000434813 RC3H1Q5TC82 1133 aaKnown RBP21.53■■□□□ 1.04
CLK1-205ENST00000434813 CCDC144CPQ8IYA2 1237 aa21.53■■□□□ 1.04
CLK1-205ENST00000434813 BPIFA3Q9BQP9 254 aa21.53■■□□□ 1.04
CLK1-205ENST00000434813 MYL10Q9BUA6 226 aa21.53■■□□□ 1.04
CLK1-205ENST00000434813 A0A087WWV3 80 aa21.53■■□□□ 1.04
CLK1-205ENST00000434813 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP21.53■■□□□ 1.04
CLK1-205ENST00000434813 ZNF202O95125 648 aa21.53■■□□□ 1.04
CLK1-205ENST00000434813 FMNL1O95466 1100 aaPredicted RBP21.53■■□□□ 1.04
CLK1-205ENST00000434813 GTF2F1P35269 517 aaKnown RBP eCLIP21.53■■□□□ 1.04
CLK1-205ENST00000434813 JMYQ8N9B5 988 aa21.53■■□□□ 1.04
CLK1-205ENST00000434813 ERCC4Q92889 916 aaPredicted RBP21.53■■□□□ 1.04
CLK1-205ENST00000434813 WDHD1O75717 1129 aaPredicted RBP21.52■■□□□ 1.04
CLK1-205ENST00000434813 IFNAR1P17181 557 aa21.52■■□□□ 1.04
CLK1-205ENST00000434813 LRMPQ12912 555 aa21.52■■□□□ 1.04
CLK1-205ENST00000434813 SART3Q15020 963 aaKnown RBP21.52■■□□□ 1.04
CLK1-205ENST00000434813 PTPAQ15257 358 aa21.52■■□□□ 1.04
CLK1-205ENST00000434813 AOPEPQ8N6M6 819 aa21.52■■□□□ 1.04
CLK1-205ENST00000434813 LRP2BPQ9P2M1 347 aa21.52■■□□□ 1.04
CLK1-205ENST00000434813 RCAN1P53805 252 aa21.51■■□□□ 1.03
CLK1-205ENST00000434813 SSRP1Q08945 709 aaKnown RBP21.51■■□□□ 1.03
CLK1-205ENST00000434813 GNL2Q13823 731 aaKnown RBP21.51■■□□□ 1.03
CLK1-205ENST00000434813 CCDC144BQ3MJ40 725 aa21.51■■□□□ 1.03
CLK1-205ENST00000434813 WASF1Q92558 559 aa21.51■■□□□ 1.03
CLK1-205ENST00000434813 TIGD1Q96MW7 591 aa21.51■■□□□ 1.03
CLK1-205ENST00000434813 MAP3K14Q99558 947 aa21.51■■□□□ 1.03
CLK1-205ENST00000434813 RNF41Q9H4P4 317 aaPredicted RBP21.51■■□□□ 1.03
CLK1-205ENST00000434813 COL1A1P02452 1464 aaPredicted RBP21.51■■□□□ 1.03
CLK1-205ENST00000434813 SLC3A2P08195 630 aaKnown RBP21.51■■□□□ 1.03
CLK1-205ENST00000434813 HPSEQ9Y251 543 aa21.51■■□□□ 1.03
CLK1-205ENST00000434813 FAM237AA0A1B0GTK4 181 aa21.5■■□□□ 1.03
CLK1-205ENST00000434813 ZRSR1Q15695 479 aaKnown RBP21.5■■□□□ 1.03
CLK1-205ENST00000434813 DPCR1Q3MIW9 517 aa21.5■■□□□ 1.03
CLK1-205ENST00000434813 GNL3Q9BVP2 549 aaKnown RBP eCLIP21.5■■□□□ 1.03
CLK1-205ENST00000434813 SLC26A6Q9BXS9 759 aa21.5■■□□□ 1.03
CLK1-205ENST00000434813 CACNA1SQ13698 1873 aa21.5■■□□□ 1.03
CLK1-205ENST00000434813 GNPATO15228 680 aa21.5■■□□□ 1.03
CLK1-205ENST00000434813 RPS6KA4O75676 772 aa21.5■■□□□ 1.03
CLK1-205ENST00000434813 WTAPQ15007 396 aa21.5■■□□□ 1.03
CLK1-205ENST00000434813 SF3B3Q15393 1217 aaKnown RBP21.5■■□□□ 1.03
CLK1-205ENST00000434813 MIGA1Q8NAN2 632 aa21.5■■□□□ 1.03
CLK1-205ENST00000434813 CACTINQ8WUQ7 758 aaKnown RBP21.5■■□□□ 1.03
CLK1-205ENST00000434813 PDCL3Q9H2J4 239 aa21.5■■□□□ 1.03
CLK1-205ENST00000434813 RGL2O15211 777 aa21.49■■□□□ 1.03
CLK1-205ENST00000434813 NEMFO60524 1076 aa21.49■■□□□ 1.03
CLK1-205ENST00000434813 MARCKSP29966 332 aaPredicted RBP21.49■■□□□ 1.03
CLK1-205ENST00000434813 RTN1Q16799 776 aa21.49■■□□□ 1.03
CLK1-205ENST00000434813 ANKRD18AQ8IVF6 992 aa21.49■■□□□ 1.03
CLK1-205ENST00000434813 EIF4ENIF1Q9NRA8 985 aaKnown RBP21.49■■□□□ 1.03
CLK1-205ENST00000434813 GNL3LQ9NVN8 582 aaKnown RBP21.49■■□□□ 1.03
CLK1-205ENST00000434813 CYP7A1P22680 504 aa21.48■■□□□ 1.03
CLK1-205ENST00000434813 NLRP12P59046 1061 aa21.48■■□□□ 1.03
CLK1-205ENST00000434813 PPARAQ07869 468 aa21.48■■□□□ 1.03
CLK1-205ENST00000434813 UBE4AQ14139 1066 aa21.48■■□□□ 1.03
CLK1-205ENST00000434813 RRP12Q5JTH9 1297 aaKnown RBP21.48■■□□□ 1.03
CLK1-205ENST00000434813 TMTC2Q8N394 836 aa21.48■■□□□ 1.03
CLK1-205ENST00000434813 MAP7D2Q96T17 732 aa21.48■■□□□ 1.03
CLK1-205ENST00000434813 ANAPC4Q9UJX5 808 aa21.48■■□□□ 1.03
CLK1-205ENST00000434813 RTCBQ9Y3I0 505 aaKnown RBP21.48■■□□□ 1.03
CLK1-205ENST00000434813 ERICH2A1L162 156 aa21.48■■□□□ 1.03
CLK1-205ENST00000434813 CHAF1AQ13111 956 aaPredicted RBP21.48■■□□□ 1.03
CLK1-205ENST00000434813 ERFEQ4G0M1 354 aa21.48■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms