RNA–Protein interactions for RNA: ENST00000276573.11

TRIM55-201, Transcript of tripartite motif containing 55, humanhuman

TSL 1 (best) BASIC

Gene TRIM55, Length 1,960 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-201ENST00000276573 ATP8A2Q9NTI2 1148 aa11.21□□□□□ -0.62
TRIM55-201ENST00000276573 AATFQ9NY61 560 aaKnown RBP eCLIP11.21□□□□□ -0.62
TRIM55-201ENST00000276573 GGA1Q9UJY5 639 aa11.21□□□□□ -0.62
TRIM55-201ENST00000276573 JAG2Q9Y219 1238 aa11.21□□□□□ -0.62
TRIM55-201ENST00000276573 SLC12A7Q9Y666 1083 aa11.21□□□□□ -0.62
TRIM55-201ENST00000276573 CYP2D7A0A087X1C5 515 aa11.2□□□□□ -0.62
TRIM55-201ENST00000276573 GOLGA8AA7E2F4 631 aa11.2□□□□□ -0.62
TRIM55-201ENST00000276573 USP17L12C9JPN9 530 aa11.2□□□□□ -0.62
TRIM55-201ENST00000276573 USP17L21D6R901 530 aa11.2□□□□□ -0.62
TRIM55-201ENST00000276573 SMIM22K7EJ46 135 aa11.2□□□□□ -0.62
TRIM55-201ENST00000276573 CDKL5O76039 1030 aa11.2□□□□□ -0.62
TRIM55-201ENST00000276573 LDHBP07195 334 aaKnown RBP11.2□□□□□ -0.62
TRIM55-201ENST00000276573 RXRAP19793 462 aa11.2□□□□□ -0.62
TRIM55-201ENST00000276573 WTAPQ15007 396 aa11.2□□□□□ -0.62
TRIM55-201ENST00000276573 NTRK3Q16288 839 aa11.2□□□□□ -0.62
TRIM55-201ENST00000276573 TMC4Q7Z404 712 aa11.2□□□□□ -0.62
TRIM55-201ENST00000276573 SP8Q8IXZ3 490 aa11.2□□□□□ -0.62
TRIM55-201ENST00000276573 ESR2Q92731 530 aa11.2□□□□□ -0.62
TRIM55-201ENST00000276573 ZNF396Q96N95 335 aaPredicted RBP11.2□□□□□ -0.62
TRIM55-201ENST00000276573 ZKSCAN3Q9BRR0 538 aa11.2□□□□□ -0.62
TRIM55-201ENST00000276573 CD209Q9NNX6 404 aa11.2□□□□□ -0.62
TRIM55-201ENST00000276573 RCOR1Q9UKL0 485 aa11.2□□□□□ -0.62
TRIM55-201ENST00000276573 MYH13Q9UKX3 1938 aa11.2□□□□□ -0.62
TRIM55-201ENST00000276573 ERICH2A1L162 156 aa11.19□□□□□ -0.62
TRIM55-201ENST00000276573 PCP11498 1178 aaKnown RBP11.19□□□□□ -0.62
TRIM55-201ENST00000276573 IL1R1P14778 569 aa11.19□□□□□ -0.62
TRIM55-201ENST00000276573 NASPP49321 788 aaPredicted RBP11.19□□□□□ -0.62
TRIM55-201ENST00000276573 CHD4Q14839 1912 aa11.19□□□□□ -0.62
TRIM55-201ENST00000276573 SBK1Q52WX2 424 aa11.19□□□□□ -0.62
TRIM55-201ENST00000276573 OTUD7BQ6GQQ9 843 aa11.19□□□□□ -0.62
TRIM55-201ENST00000276573 MICU3Q86XE3 530 aa11.19□□□□□ -0.62
TRIM55-201ENST00000276573 DZIP1Q86YF9 867 aaKnown RBP11.19□□□□□ -0.62
TRIM55-201ENST00000276573 KLHL34Q8N239 644 aa11.19□□□□□ -0.62
TRIM55-201ENST00000276573 MYL10Q9BUA6 226 aa11.19□□□□□ -0.62
TRIM55-201ENST00000276573 TSPY26PQ9H489 355 aa11.19□□□□□ -0.62
TRIM55-201ENST00000276573 DCP1AQ9NPI6 582 aaPredicted RBP11.19□□□□□ -0.62
TRIM55-201ENST00000276573 GOLGA6L4A6NEF3 574 aa11.19□□□□□ -0.62
TRIM55-201ENST00000276573 GSTO1P78417 241 aa11.19□□□□□ -0.62
TRIM55-201ENST00000276573 ILDR1Q86SU0 546 aaPredicted RBP11.19□□□□□ -0.62
TRIM55-201ENST00000276573 CCDC144CPQ8IYA2 1237 aa11.19□□□□□ -0.62
TRIM55-201ENST00000276573 TBC1D16Q8TBP0 767 aa11.19□□□□□ -0.62
TRIM55-201ENST00000276573 PGBD1Q96JS3 809 aa11.19□□□□□ -0.62
TRIM55-201ENST00000276573 POLLQ9UGP5 575 aa11.19□□□□□ -0.62
TRIM55-201ENST00000276573 LDHCP07864 332 aa11.18□□□□□ -0.62
TRIM55-201ENST00000276573 IARSP41252 1262 aaKnown RBP11.18□□□□□ -0.62
TRIM55-201ENST00000276573 PPP4CP60510 307 aa11.18□□□□□ -0.62
TRIM55-201ENST00000276573 SEC23AQ15436 765 aa11.18□□□□□ -0.62
TRIM55-201ENST00000276573 GRIK5Q16478 980 aa11.18□□□□□ -0.62
TRIM55-201ENST00000276573 UBAC1Q9BSL1 405 aa11.18□□□□□ -0.62
TRIM55-201ENST00000276573 ALG1Q9BT22 464 aa11.18□□□□□ -0.62
TRIM55-201ENST00000276573 NID2Q14112 1375 aa11.18□□□□□ -0.62
TRIM55-201ENST00000276573 PPEF1O14829 653 aaPredicted RBP11.17□□□□□ -0.62
TRIM55-201ENST00000276573 LIG1P18858 919 aa11.17□□□□□ -0.62
TRIM55-201ENST00000276573 RCAN1P53805 252 aa11.17□□□□□ -0.62
TRIM55-201ENST00000276573 SSRP1Q08945 709 aaKnown RBP11.17□□□□□ -0.62
TRIM55-201ENST00000276573 PHKBQ93100 1093 aa11.17□□□□□ -0.62
TRIM55-201ENST00000276573 USP28Q96RU2 1077 aa11.17□□□□□ -0.62
TRIM55-201ENST00000276573 GJB4Q9NTQ9 266 aa11.17□□□□□ -0.62
TRIM55-201ENST00000276573 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.17□□□□□ -0.62
TRIM55-201ENST00000276573 CCDC88AQ3V6T2 1871 aa11.17□□□□□ -0.62
TRIM55-201ENST00000276573 C6orf229H3BNL8 230 aa11.17□□□□□ -0.62
TRIM55-201ENST00000276573 ORC4O43929 436 aa11.17□□□□□ -0.62
TRIM55-201ENST00000276573 RANBP6O60518 1105 aaKnown RBP11.17□□□□□ -0.62
TRIM55-201ENST00000276573 SRGNP10124 158 aa11.17□□□□□ -0.62
TRIM55-201ENST00000276573 NPR1P16066 1061 aa11.17□□□□□ -0.62
TRIM55-201ENST00000276573 IFNAR1P17181 557 aa11.17□□□□□ -0.62
TRIM55-201ENST00000276573 CEBPZQ03701 1054 aaKnown RBP11.17□□□□□ -0.62
TRIM55-201ENST00000276573 BRAPQ7Z569 592 aa11.17□□□□□ -0.62
TRIM55-201ENST00000276573 ZNF654Q8IZM8 581 aa11.17□□□□□ -0.62
TRIM55-201ENST00000276573 AIFM3Q96NN9 605 aa11.17□□□□□ -0.62
TRIM55-201ENST00000276573 ZSCAN10Q96SZ4 725 aaPredicted RBP11.17□□□□□ -0.62
TRIM55-201ENST00000276573 ATP6V0A2Q9Y487 856 aa11.17□□□□□ -0.62
TRIM55-201ENST00000276573 PARP3Q9Y6F1 533 aa11.17□□□□□ -0.62
TRIM55-201ENST00000276573 TNKSO95271 1327 aa11.16□□□□□ -0.62
TRIM55-201ENST00000276573 STK36Q9NRP7 1315 aa11.16□□□□□ -0.62
TRIM55-201ENST00000276573 FMNL1O95466 1100 aaPredicted RBP11.16□□□□□ -0.62
TRIM55-201ENST00000276573 BAG3O95817 575 aa11.16□□□□□ -0.62
TRIM55-201ENST00000276573 SLC3A2P08195 630 aaKnown RBP11.16□□□□□ -0.62
TRIM55-201ENST00000276573 CYP2D6P10635 497 aa11.16□□□□□ -0.62
TRIM55-201ENST00000276573 PDE6BP35913 854 aa11.16□□□□□ -0.62
TRIM55-201ENST00000276573 RTN1Q16799 776 aa11.16□□□□□ -0.62
TRIM55-201ENST00000276573 FANCBQ8NB91 859 aa11.16□□□□□ -0.62
TRIM55-201ENST00000276573 RTEL1Q9NZ71 1219 aa11.16□□□□□ -0.62
TRIM55-201ENST00000276573 ARPP21Q9UBL0 812 aaPredicted RBP11.16□□□□□ -0.62
TRIM55-201ENST00000276573 MKRN1Q9UHC7 482 aaKnown RBP11.16□□□□□ -0.62
TRIM55-201ENST00000276573 MAST2Q6P0Q8 1798 aa11.16□□□□□ -0.62
TRIM55-201ENST00000276573 BAZ2AQ9UIF9 1905 aaKnown RBP11.16□□□□□ -0.62
TRIM55-201ENST00000276573 CCDC196A0A1B0GTZ2 297 aa11.16□□□□□ -0.62
TRIM55-201ENST00000276573 PRDM1O75626 825 aa11.16□□□□□ -0.62
TRIM55-201ENST00000276573 POLR3DP05423 398 aaPredicted RBP11.16□□□□□ -0.62
TRIM55-201ENST00000276573 MMP10P09238 476 aa11.16□□□□□ -0.62
TRIM55-201ENST00000276573 USP17L8P0C7I0 530 aa11.16□□□□□ -0.62
TRIM55-201ENST00000276573 ALDH1B1P30837 517 aa11.16□□□□□ -0.62
TRIM55-201ENST00000276573 KIF23Q02241 960 aaPredicted RBP11.16□□□□□ -0.62
TRIM55-201ENST00000276573 EVX2Q03828 476 aa11.16□□□□□ -0.62
TRIM55-201ENST00000276573 PPP2R5BQ15173 497 aa11.16□□□□□ -0.62
TRIM55-201ENST00000276573 DIXDC1Q155Q3 683 aa11.16□□□□□ -0.62
TRIM55-201ENST00000276573 KRT40Q6A162 431 aa11.16□□□□□ -0.62
TRIM55-201ENST00000276573 IQCA1Q86XH1 822 aa11.16□□□□□ -0.62
TRIM55-201ENST00000276573 ENAHQ8N8S7 591 aaPredicted RBP11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms