RNA–Protein interactions for RNA: snR6

snR6, Transcript of U6 spliceosomal RNA (U6 snRNA), yeast

Gene snR6, Length 112 nt, Biotype snRNA.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
snR6	snR6	PTC4	P38089	393 aa		0.75	□□□□□ -2.29
snR6	snR6	YEL077C	Q3E7X8	1277 aa		0.75	□□□□□ -2.29
snR6	snR6	HTA1	P04911	132 aa	Known RBP	0.74	□□□□□ -2.29
snR6	snR6	HTA2	P04912	132 aa		0.74	□□□□□ -2.29
snR6	snR6	TRK2	P28584	889 aa		0.74	□□□□□ -2.29
snR6	snR6	YDR344C	Q05510	147 aa		0.74	□□□□□ -2.29
snR6	snR6	YEL023C	P39992	682 aa		0.73	□□□□□ -2.29
snR6	snR6	ICP55	P40051	511 aa		0.73	□□□□□ -2.29
snR6	snR6	BBC1	P47068	1157 aa		0.73	□□□□□ -2.29
snR6	snR6	PML39	Q03760	334 aa		0.73	□□□□□ -2.29
snR6	snR6	YML082W	Q04533	649 aa	Known RBP	0.73	□□□□□ -2.29
snR6	snR6	BNI4	P53858	892 aa		0.71	□□□□□ -2.3
snR6	snR6	GIS1	Q03833	894 aa		0.71	□□□□□ -2.3
snR6	snR6	YPR204W	Q08995	1032 aa		0.71	□□□□□ -2.3
snR6	snR6	HAP5	Q02516	242 aa		0.7	□□□□□ -2.3
snR6	snR6	GYP1	Q08484	637 aa		0.7	□□□□□ -2.3
snR6	snR6	YDL176W	Q12027	708 aa		0.7	□□□□□ -2.3
snR6	snR6	YGR035C	P53222	116 aa		0.69	□□□□□ -2.3
snR6	snR6	LCB5	Q06147	687 aa	Known RBP	0.69	□□□□□ -2.3
snR6	snR6	IRC24	P40580	263 aa		0.68	□□□□□ -2.3
snR6	snR6	PHM7	Q12252	991 aa		0.68	□□□□□ -2.3
snR6	snR6	RIM101	P33400	625 aa		0.67	□□□□□ -2.3
snR6	snR6	MRF1	P30775	413 aa	Predicted RBP	0.66	□□□□□ -2.3
snR6	snR6	SAM3	Q08986	587 aa		0.66	□□□□□ -2.3
snR6	snR6	VMA1	P17255	1071 aa	Known RBP	0.65	□□□□□ -2.31
snR6	snR6	DCW1	P36091	449 aa		0.65	□□□□□ -2.31
snR6	snR6	SAS4	Q04003	481 aa		0.65	□□□□□ -2.31
snR6	snR6	GYP5	Q12344	894 aa		0.65	□□□□□ -2.31
snR6	snR6	AIR1	P40507	360 aa	Known RBP	0.64	□□□□□ -2.31
snR6	snR6	CAF120	P53836	1060 aa		0.64	□□□□□ -2.31
snR6	snR6	YPL034W	Q03083	165 aa		0.64	□□□□□ -2.31
snR6	snR6	DIP2	Q12220	943 aa	Predicted RBP	0.61	□□□□□ -2.31
snR6	snR6	ERG12	P07277	443 aa		0.6	□□□□□ -2.31
snR6	snR6	CDC4	P07834	779 aa		0.6	□□□□□ -2.31
snR6	snR6	MAC1	P35192	417 aa		0.6	□□□□□ -2.31
snR6	snR6	PTP3	P40048	928 aa		0.6	□□□□□ -2.31
snR6	snR6	MID1	P41821	548 aa		0.6	□□□□□ -2.31
snR6	snR6	CCT8	P47079	568 aa	Known RBP	0.6	□□□□□ -2.31
snR6	snR6	HPF1	Q05164	967 aa		0.6	□□□□□ -2.31
snR6	snR6	DBP1	P24784	617 aa	Known RBP	0.59	□□□□□ -2.31
snR6	snR6	YMR1	P47147	688 aa	Known RBP RIP-Chip data	0.59	□□□□□ -2.31	not detected
snR6	snR6	NSG2	P53898	299 aa		0.58	□□□□□ -2.32
snR6	snR6	AI2	P03876	854 aa		0.57	□□□□□ -2.32
snR6	snR6	RRD1	P40454	393 aa	Known RBP	0.57	□□□□□ -2.32
snR6	snR6	SDH2	P21801	266 aa		0.56	□□□□□ -2.32
snR6	snR6	ACO2	P39533	789 aa		0.56	□□□□□ -2.32
snR6	snR6	YIL055C	P40523	627 aa	Known RBP	0.56	□□□□□ -2.32
snR6	snR6	CLA4	P48562	842 aa		0.55	□□□□□ -2.32
snR6	snR6	HST3	P53687	447 aa		0.55	□□□□□ -2.32
snR6	snR6	DPH6	Q12429	685 aa		0.55	□□□□□ -2.32
snR6	snR6	YLR346C	Q06139	101 aa		0.54	□□□□□ -2.32
snR6	snR6	YPR015C	Q12531	247 aa		0.54	□□□□□ -2.32
snR6	snR6	YPR053C	Q6Q5F3	151 aa		0.54	□□□□□ -2.32
snR6	snR6	MDJ1	P35191	511 aa		0.53	□□□□□ -2.32
snR6	snR6	NMA111	P53920	997 aa		0.53	□□□□□ -2.32
snR6	snR6	MPC54	Q08550	464 aa		0.52	□□□□□ -2.33
snR6	snR6	YIR007W	P40566	764 aa		0.51	□□□□□ -2.33
snR6	snR6	AFT1	P22149	690 aa		0.5	□□□□□ -2.33
snR6	snR6	ASH1	P34233	588 aa		0.5	□□□□□ -2.33
snR6	snR6	FRK1	Q03002	865 aa	Predicted RBP	0.5	□□□□□ -2.33
snR6	snR6	THI72	Q08579	599 aa		0.5	□□□□□ -2.33
snR6	snR6	GRE2	Q12068	342 aa	Known RBP	0.5	□□□□□ -2.33
snR6	snR6	RAM1	P22007	431 aa		0.49	□□□□□ -2.33
snR6	snR6	MRM1	P25270	412 aa		0.49	□□□□□ -2.33
snR6	snR6	CST6	P40535	587 aa		0.49	□□□□□ -2.33
snR6	snR6	AVT1	P47082	602 aa		0.49	□□□□□ -2.33
snR6	snR6	SCW11	P53189	542 aa		0.49	□□□□□ -2.33
snR6	snR6	HED1	Q03937	162 aa		0.49	□□□□□ -2.33
snR6	snR6	AI1	P03875	834 aa		0.48	□□□□□ -2.33
snR6	snR6	STS1	P38637	319 aa		0.48	□□□□□ -2.33
snR6	snR6	RSM7	P47150	247 aa		0.48	□□□□□ -2.33
snR6	snR6	DPL1	Q05567	589 aa		0.48	□□□□□ -2.33
snR6	snR6	LAM6	Q08001	693 aa		0.48	□□□□□ -2.33
snR6	snR6	AI4	P03878	556 aa		0.47	□□□□□ -2.33
snR6	snR6	YJR115W	P47152	169 aa		0.47	□□□□□ -2.33
snR6	snR6	YMR187C	Q03236	431 aa		0.47	□□□□□ -2.33
snR6	snR6	OPT2	Q06593	877 aa		0.47	□□□□□ -2.33
snR6	snR6	SRF1	Q12516	437 aa		0.47	□□□□□ -2.33
snR6	snR6	PRT1	P06103	763 aa	Known RBP	0.46	□□□□□ -2.34
snR6	snR6	YPT53	P36019	220 aa		0.46	□□□□□ -2.34
snR6	snR6	SKN7	P38889	622 aa		0.46	□□□□□ -2.34
snR6	snR6	ATH1	P48016	1211 aa		0.46	□□□□□ -2.34
snR6	snR6	LYS5	P50113	272 aa		0.46	□□□□□ -2.34
snR6	snR6	MIP1	P15801	1254 aa		0.45	□□□□□ -2.34
snR6	snR6	SPT16	P32558	1035 aa	Known RBP	0.45	□□□□□ -2.34
snR6	snR6	YKL222C	P35995	705 aa		0.45	□□□□□ -2.34
snR6	snR6	OMA1	P36163	345 aa		0.45	□□□□□ -2.34
snR6	snR6	GLY1	P37303	387 aa	Known RBP	0.45	□□□□□ -2.34
snR6	snR6	AOS1	Q06624	347 aa		0.45	□□□□□ -2.34
snR6	snR6	ISU2	Q12056	156 aa		0.45	□□□□□ -2.34
snR6	snR6	MPH3	P0CE00	602 aa		0.44	□□□□□ -2.34
snR6	snR6	NFS1	P25374	497 aa		0.44	□□□□□ -2.34
snR6	snR6	TYW1	Q08960	810 aa	Known RBP	0.44	□□□□□ -2.34
snR6	snR6	GUT1	P32190	709 aa		0.43	□□□□□ -2.34
snR6	snR6	RTG3	P38165	486 aa		0.43	□□□□□ -2.34
snR6	snR6	VPS29	P38759	282 aa		0.43	□□□□□ -2.34
snR6	snR6	BDP1	P46678	594 aa		0.43	□□□□□ -2.34
snR6	snR6	JJJ3	P47138	172 aa		0.43	□□□□□ -2.34
snR6	snR6	TRM1	P15565	570 aa	Known RBP	0.42	□□□□□ -2.34
snR6	snR6	SNM1	P40993	198 aa		0.42	□□□□□ -2.34

Retrieved 100 of 5,963 RNA–protein pairs in 7.7 ms