RNA–Protein interactions for RNA: YNL288W

CAF40, Transcript of Component of the CCR4-NOT transcriptional complex, yeastyeast

Gene CAF40, Length 1,122 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CAF40YNL288W TY1B-BRQ12193 1756 aa9.84□□□□□ -0.83
CAF40YNL288W TY1B-GR3Q12316 1755 aa9.84□□□□□ -0.83
CAF40YNL288W TY1B-ORQ92393 1755 aa9.84□□□□□ -0.83
CAF40YNL288W CST9Q06032 482 aa9.83□□□□□ -0.84
CAF40YNL288W PAN1P32521 1480 aa9.83□□□□□ -0.84
CAF40YNL288W TY1B-DR3Q99231 1755 aa9.83□□□□□ -0.84
CAF40YNL288W TY2B-BQ12491 1770 aa9.82□□□□□ -0.84
CAF40YNL288W MRM1P25270 412 aa9.81□□□□□ -0.84
CAF40YNL288W ESC1Q03661 1658 aaKnown RBP9.8□□□□□ -0.84
CAF40YNL288W MMS22Q06164 1454 aa9.79□□□□□ -0.84
CAF40YNL288W TY1B-HO13535 1793 aa9.79□□□□□ -0.84
CAF40YNL288W TY1B-DR5P0C2I2 1755 aa9.79□□□□□ -0.84
CAF40YNL288W TY1B-DR6P0C2I3 1755 aa9.79□□□□□ -0.84
CAF40YNL288W TY1B-LR2P0C2I5 1755 aa9.79□□□□□ -0.84
CAF40YNL288W TY1B-LR3P0C2I6 1755 aaKnown RBP9.79□□□□□ -0.84
CAF40YNL288W TY1B-PR1P0C2I9 1755 aaKnown RBP9.79□□□□□ -0.84
CAF40YNL288W TY1B-PR2P0C2J0 1756 aa9.79□□□□□ -0.84
CAF40YNL288W TY1B-PR3P0C2J1 1755 aaKnown RBP9.79□□□□□ -0.84
CAF40YNL288W TY1B-JR1P47098 1755 aa9.79□□□□□ -0.84
CAF40YNL288W TY1B-ML2Q03434 1755 aaKnown RBP9.79□□□□□ -0.84
CAF40YNL288W TY1B-ER1Q03612 1755 aa9.79□□□□□ -0.84
CAF40YNL288W TY1B-ML1Q04711 1755 aaKnown RBP9.79□□□□□ -0.84
CAF40YNL288W TY1B-GR2Q12269 1755 aa9.79□□□□□ -0.84
CAF40YNL288W TY1B-OLQ12273 1755 aa9.79□□□□□ -0.84
CAF40YNL288W TY1B-PLQ12414 1755 aaKnown RBP9.79□□□□□ -0.84
CAF40YNL288W RQC2Q12532 1038 aaKnown RBP9.78□□□□□ -0.84
CAF40YNL288W DNF1P32660 1571 aa9.77□□□□□ -0.85
CAF40YNL288W YTA7P40340 1379 aa9.75□□□□□ -0.85
CAF40YNL288W SPP41P38904 1435 aa9.74□□□□□ -0.85
CAF40YNL288W MYO4P32492 1471 aa9.73□□□□□ -0.85
CAF40YNL288W MET5P47169 1442 aa9.73□□□□□ -0.85
CAF40YNL288W RPA190P10964 1664 aaKnown RBP9.72□□□□□ -0.85
CAF40YNL288W NSR1P27476 414 aaKnown RBP RIP-Chip data9.72□□□□□ -0.85not detected
CAF40YNL288W YOR238WQ08634 303 aa9.71□□□□□ -0.86
CAF40YNL288W YAP5P40574 245 aa9.7□□□□□ -0.86
CAF40YNL288W TRM732Q03496 1420 aa9.7□□□□□ -0.86
CAF40YNL288W VTH1P40438 1549 aa9.66□□□□□ -0.86
CAF40YNL288W VTH2P40890 1549 aa9.66□□□□□ -0.86
CAF40YNL288W TSC11P40061 1430 aa9.66□□□□□ -0.86
CAF40YNL288W BUD31P25337 157 aaPredicted RBP9.65□□□□□ -0.86
CAF40YNL288W MST1P07236 462 aa9.64□□□□□ -0.87
CAF40YNL288W RTG3P38165 486 aa9.64□□□□□ -0.87
CAF40YNL288W UBP9P39967 754 aa9.64□□□□□ -0.87
CAF40YNL288W NTE1Q04958 1679 aa9.61□□□□□ -0.87
CAF40YNL288W TY1B-JR2P47100 1755 aaKnown RBP9.6□□□□□ -0.87
CAF40YNL288W TY1B-ER2Q03619 1755 aa9.6□□□□□ -0.87
CAF40YNL288W TY1B-MR1Q04214 1755 aa9.6□□□□□ -0.87
CAF40YNL288W TY1B-MR2Q04670 1755 aaKnown RBP9.6□□□□□ -0.87
CAF40YNL288W TY1B-LR1Q12088 1755 aaKnown RBP9.6□□□□□ -0.87
CAF40YNL288W TY1B-NL1Q12112 1755 aa9.6□□□□□ -0.87
CAF40YNL288W TY1B-GR1Q12141 1755 aa9.6□□□□□ -0.87
CAF40YNL288W TY1B-BLQ12490 1755 aa9.6□□□□□ -0.87
CAF40YNL288W NUP159P40477 1460 aa9.59□□□□□ -0.87
CAF40YNL288W LTE1P07866 1435 aa9.57□□□□□ -0.88
CAF40YNL288W RPO21P04050 1733 aaKnown RBP9.56□□□□□ -0.88
CAF40YNL288W VPS29P38759 282 aa9.55□□□□□ -0.88
CAF40YNL288W SNQ2P32568 1501 aaKnown RBP9.55□□□□□ -0.88
CAF40YNL288W STH1P32597 1359 aa9.54□□□□□ -0.88
CAF40YNL288W RCR1P38212 213 aa9.54□□□□□ -0.88
CAF40YNL288W YMR1P47147 688 aaKnown RBP RIP-Chip data9.54□□□□□ -0.88not detected
CAF40YNL288W PIB1Q06651 286 aa9.53□□□□□ -0.88
CAF40YNL288W GTT3P39996 337 aa9.51□□□□□ -0.89
CAF40YNL288W SNT2P53127 1403 aa9.5□□□□□ -0.89
CAF40YNL288W VPS15P22219 1454 aa9.5□□□□□ -0.89
CAF40YNL288W GEA2P39993 1459 aaKnown RBP9.5□□□□□ -0.89
CAF40YNL288W DBP1P24784 617 aaKnown RBP9.49□□□□□ -0.89
CAF40YNL288W YRF1-1P0CX20 1796 aa9.49□□□□□ -0.89
CAF40YNL288W YRF1-5P0CX21 1796 aa9.49□□□□□ -0.89
CAF40YNL288W YRF1-8P0CX22 1796 aa9.49□□□□□ -0.89
CAF40YNL288W MLP2P40457 1679 aa9.47□□□□□ -0.89
CAF40YNL288W YFR006WP43590 535 aa9.46□□□□□ -0.9
CAF40YNL288W ULS1Q08562 1619 aa9.45□□□□□ -0.9
CAF40YNL288W YBL029C-AQ3E756 94 aa9.44□□□□□ -0.9
CAF40YNL288W PDR15Q04182 1529 aaKnown RBP9.44□□□□□ -0.9
CAF40YNL288W STS1P38637 319 aa9.43□□□□□ -0.9
CAF40YNL288W TAF7Q05021 590 aa9.43□□□□□ -0.9
CAF40YNL288W SAS10Q12136 610 aaPredicted RBP9.42□□□□□ -0.9
CAF40YNL288W WSC3Q12215 556 aa9.42□□□□□ -0.9
CAF40YNL288W PDR12Q02785 1511 aa9.4□□□□□ -0.91
CAF40YNL288W RAM2P29703 316 aa9.39□□□□□ -0.91
CAF40YNL288W RTT106P40161 455 aa9.38□□□□□ -0.91
CAF40YNL288W VNX1P42839 908 aa9.37□□□□□ -0.91
CAF40YNL288W IRC20Q06554 1556 aa9.37□□□□□ -0.91
CAF40YNL288W DRS2P39524 1355 aa9.37□□□□□ -0.91
CAF40YNL288W MET10P39692 1035 aa9.36□□□□□ -0.91
CAF40YNL288W SPO14P36126 1683 aa9.36□□□□□ -0.91
CAF40YNL288W BNI1P41832 1953 aa9.35□□□□□ -0.91
CAF40YNL288W NUP170P38181 1502 aa9.34□□□□□ -0.91
CAF40YNL288W GDB1Q06625 1536 aa9.34□□□□□ -0.91
CAF40YNL288W VMA1P17255 1071 aaKnown RBP9.33□□□□□ -0.92
CAF40YNL288W MAK11P20484 414 aaKnown RBP9.33□□□□□ -0.92
CAF40YNL288W SPP1Q03012 353 aa9.32□□□□□ -0.92
CAF40YNL288W ITT1Q04638 464 aa9.3□□□□□ -0.92
CAF40YNL288W GEA1P47102 1408 aaPredicted RBP9.3□□□□□ -0.92
CAF40YNL288W SIS1P25294 352 aaKnown RBP9.29□□□□□ -0.92
CAF40YNL288W IQG1Q12280 1495 aa9.28□□□□□ -0.92
CAF40YNL288W NUP157P40064 1391 aaKnown RBP9.27□□□□□ -0.93
CAF40YNL288W CAT8P39113 1433 aa9.27□□□□□ -0.93
CAF40YNL288W PDR10P51533 1564 aa9.26□□□□□ -0.93
CAF40YNL288W MMS1Q06211 1407 aa9.26□□□□□ -0.93
Retrieved 100 of 5,963 RNA–protein pairs in 9.1 ms