RNA–Protein interactions for RNA: YML029W

USA1, Transcript of Scaffold subunit of the Hrd1p ubiquitin ligase, yeastyeast

Gene USA1, Length 2,517 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
USA1YML029W SNT2P53127 1403 aa6.08□□□□□ -1.44
USA1YML029W RQC2Q12532 1038 aaKnown RBP6.07□□□□□ -1.44
USA1YML029W NTE1Q04958 1679 aa6.07□□□□□ -1.44
USA1YML029W RPO21P04050 1733 aaKnown RBP6.07□□□□□ -1.44
USA1YML029W SNQ2P32568 1501 aaKnown RBP6.07□□□□□ -1.44
USA1YML029W NUP159P40477 1460 aa6.06□□□□□ -1.44
USA1YML029W MLP2P40457 1679 aa6.04□□□□□ -1.44
USA1YML029W GEA2P39993 1459 aaKnown RBP6.02□□□□□ -1.45
USA1YML029W PDR12Q02785 1511 aa6.02□□□□□ -1.45
USA1YML029W YRF1-1P0CX20 1796 aa6□□□□□ -1.45
USA1YML029W YRF1-5P0CX21 1796 aa6□□□□□ -1.45
USA1YML029W YRF1-8P0CX22 1796 aa6□□□□□ -1.45
USA1YML029W VPS15P22219 1454 aa6□□□□□ -1.45
USA1YML029W MET10P39692 1035 aa5.98□□□□□ -1.45
USA1YML029W ULS1Q08562 1619 aa5.97□□□□□ -1.45
USA1YML029W IRC20Q06554 1556 aa5.97□□□□□ -1.45
USA1YML029W BUD3P25558 1636 aa5.96□□□□□ -1.45
USA1YML029W CAT8P39113 1433 aa5.96□□□□□ -1.46
USA1YML029W PDR15Q04182 1529 aaKnown RBP5.95□□□□□ -1.46
USA1YML029W RTT106P40161 455 aa5.95□□□□□ -1.46
USA1YML029W DRS2P39524 1355 aa5.94□□□□□ -1.46
USA1YML029W TRM3Q07527 1436 aa5.93□□□□□ -1.46
USA1YML029W GDB1Q06625 1536 aa5.93□□□□□ -1.46
USA1YML029W NUP170P38181 1502 aa5.92□□□□□ -1.46
USA1YML029W BNI1P41832 1953 aa5.91□□□□□ -1.46
USA1YML029W SPO14P36126 1683 aa5.91□□□□□ -1.46
USA1YML029W AVT3P36062 692 aa5.9□□□□□ -1.46
USA1YML029W IQG1Q12280 1495 aa5.9□□□□□ -1.47
USA1YML029W GEA1P47102 1408 aaPredicted RBP5.9□□□□□ -1.47
USA1YML029W SAS10Q12136 610 aaPredicted RBP5.88□□□□□ -1.47
USA1YML029W NUP157P40064 1391 aaKnown RBP5.87□□□□□ -1.47
USA1YML029W DOP1Q03921 1698 aa5.87□□□□□ -1.47
USA1YML029W PDR10P51533 1564 aa5.86□□□□□ -1.47
USA1YML029W ITT1Q04638 464 aa5.84□□□□□ -1.47
USA1YML029W MMS1Q06211 1407 aa5.84□□□□□ -1.47
USA1YML029W YBT1P32386 1661 aa5.83□□□□□ -1.48
USA1YML029W TY3B-GQ99315 1547 aa5.83□□□□□ -1.48
USA1YML029W IFH1P39520 1085 aa5.8□□□□□ -1.48
USA1YML029W ARO1P08566 1588 aaKnown RBP5.8□□□□□ -1.48
USA1YML029W SEC7P11075 2009 aaKnown RBP5.79□□□□□ -1.48
USA1YML029W CHC1P22137 1653 aaKnown RBP5.79□□□□□ -1.48
USA1YML029W SRB8P25648 1427 aa5.78□□□□□ -1.48
USA1YML029W IKI3Q06706 1349 aaKnown RBP5.78□□□□□ -1.48
USA1YML029W DNF2Q12675 1612 aa5.78□□□□□ -1.48
USA1YML029W YSP2Q06681 1438 aa5.77□□□□□ -1.49
USA1YML029W DIP2Q12220 943 aaPredicted RBP5.76□□□□□ -1.49
USA1YML029W HAP1P0CE41 1502 aa5.75□□□□□ -1.49
USA1YML029W URN1Q06525 465 aaKnown RBP5.75□□□□□ -1.49
USA1YML029W BNR1P40450 1375 aa5.74□□□□□ -1.49
USA1YML029W MIF2P35201 549 aa5.73□□□□□ -1.49
USA1YML029W FAP1P53971 965 aa5.71□□□□□ -1.5
USA1YML029W CKB1P43639 278 aa5.7□□□□□ -1.5
USA1YML029W ABP1P15891 592 aaKnown RBP5.69□□□□□ -1.5
USA1YML029W YOR093CQ12275 1648 aa5.68□□□□□ -1.5
USA1YML029W BUD21Q08492 214 aaPredicted RBP5.67□□□□□ -1.5
USA1YML029W GCN2P15442 1659 aa5.66□□□□□ -1.5
USA1YML029W PDR5P33302 1511 aaKnown RBP5.65□□□□□ -1.5
USA1YML029W YAP3P38749 330 aa5.65□□□□□ -1.5
USA1YML029W NUP188P52593 1655 aaKnown RBP5.65□□□□□ -1.51
USA1YML029W DNF3Q12674 1656 aa5.63□□□□□ -1.51
USA1YML029W SSM4P40318 1319 aa5.61□□□□□ -1.51
USA1YML029W IPL1P38991 367 aa5.58□□□□□ -1.52
USA1YML029W TY1B-NL2Q99337 1749 aaKnown RBP5.57□□□□□ -1.52
USA1YML029W IML1P47170 1584 aa5.57□□□□□ -1.52
USA1YML029W VMR1P38735 1592 aa5.56□□□□□ -1.52
USA1YML029W MAK10Q02197 733 aa5.55□□□□□ -1.52
USA1YML029W PAF1P38351 445 aa5.54□□□□□ -1.52
USA1YML029W RAV1P47104 1357 aa5.53□□□□□ -1.52
USA1YML029W DMA1P38823 416 aa5.51□□□□□ -1.53
USA1YML029W YMR196WQ04336 1088 aa5.51□□□□□ -1.53
USA1YML029W SCT1P32784 759 aa5.5□□□□□ -1.53
USA1YML029W CFT1Q06632 1357 aaKnown RBP5.5□□□□□ -1.53
USA1YML029W RTC1Q08281 1341 aa5.5□□□□□ -1.53
USA1YML029W YFR006WP43590 535 aa5.47□□□□□ -1.53
USA1YML029W NOP7P53261 605 aaKnown RBP5.47□□□□□ -1.53
USA1YML029W TYS1P36421 394 aaKnown RBP5.46□□□□□ -1.54
USA1YML029W PDR11P40550 1411 aa5.46□□□□□ -1.54
USA1YML029W BCK1Q01389 1478 aa5.45□□□□□ -1.54
USA1YML029W NAP1P25293 417 aaKnown RBP5.43□□□□□ -1.54
USA1YML029W NUP192P47054 1683 aa5.43□□□□□ -1.54
USA1YML029W ESL2P36168 1195 aa5.41□□□□□ -1.54
USA1YML029W USO1P25386 1790 aa5.41□□□□□ -1.54
USA1YML029W ALD4P46367 519 aaKnown RBP5.41□□□□□ -1.54
USA1YML029W MRX12P47084 519 aa5.4□□□□□ -1.55
USA1YML029W TY3B-IQ7LHG5 1498 aaKnown RBP5.39□□□□□ -1.55
USA1YML029W PRY3P47033 881 aa5.36□□□□□ -1.55
USA1YML029W YNR029CP53729 429 aaKnown RBP5.35□□□□□ -1.55
USA1YML029W THI12P42883 340 aa5.34□□□□□ -1.56
USA1YML029W THI5P43534 340 aa5.34□□□□□ -1.56
USA1YML029W THI11P47183 340 aa5.34□□□□□ -1.56
USA1YML029W THI13Q07748 340 aa5.34□□□□□ -1.56
USA1YML029W RIA1P53893 1110 aa5.33□□□□□ -1.56
USA1YML029W KRE5P22023 1365 aa5.32□□□□□ -1.56
USA1YML029W RAD9P14737 1309 aa5.32□□□□□ -1.56
USA1YML029W PSK1P31374 1356 aa5.31□□□□□ -1.56
USA1YML029W CAB1Q04430 367 aa5.3□□□□□ -1.56
USA1YML029W YAH1Q12184 172 aaKnown RBP5.3□□□□□ -1.56
USA1YML029W LEO1P38439 464 aa5.3□□□□□ -1.56
USA1YML029W PTP3P40048 928 aa5.29□□□□□ -1.56
USA1YML029W TAF5P38129 798 aa5.28□□□□□ -1.56
Retrieved 100 of 5,963 RNA–protein pairs in 10.7 ms