RNA–Protein interactions for RNA: YHR120W

MSH1, Transcript of DNA-binding protein of the mitochondria, yeastyeast

Gene MSH1, Length 2,880 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
MSH1YHR120W YRF1-8P0CX22 1796 aa8.1□□□□□ -1.11
MSH1YHR120W YTA7P40340 1379 aa8.1□□□□□ -1.11
MSH1YHR120W RPO21P04050 1733 aaKnown RBP8.08□□□□□ -1.12
MSH1YHR120W GEA2P39993 1459 aaKnown RBP8.07□□□□□ -1.12
MSH1YHR120W BNI1P41832 1953 aa8.06□□□□□ -1.12
MSH1YHR120W VPS15P22219 1454 aa8.05□□□□□ -1.12
MSH1YHR120W SNQ2P32568 1501 aaKnown RBP8.04□□□□□ -1.12
MSH1YHR120W SNT2P53127 1403 aa8□□□□□ -1.13
MSH1YHR120W ITT1Q04638 464 aa7.99□□□□□ -1.13
MSH1YHR120W STH1P32597 1359 aa7.97□□□□□ -1.13
MSH1YHR120W FAP1P53971 965 aa7.95□□□□□ -1.14
MSH1YHR120W DRS2P39524 1355 aa7.95□□□□□ -1.14
MSH1YHR120W ULS1Q08562 1619 aa7.94□□□□□ -1.14
MSH1YHR120W MLP2P40457 1679 aa7.93□□□□□ -1.14
MSH1YHR120W SPO14P36126 1683 aa7.92□□□□□ -1.14
MSH1YHR120W MMS1Q06211 1407 aa7.92□□□□□ -1.14
MSH1YHR120W PDR12Q02785 1511 aa7.9□□□□□ -1.14
MSH1YHR120W NUP170P38181 1502 aa7.9□□□□□ -1.14
MSH1YHR120W PDR15Q04182 1529 aaKnown RBP7.9□□□□□ -1.14
MSH1YHR120W MET10P39692 1035 aa7.89□□□□□ -1.15
MSH1YHR120W IRC20Q06554 1556 aa7.87□□□□□ -1.15
MSH1YHR120W RTT106P40161 455 aa7.87□□□□□ -1.15
MSH1YHR120W GDB1Q06625 1536 aa7.87□□□□□ -1.15
MSH1YHR120W SAS10Q12136 610 aaPredicted RBP7.86□□□□□ -1.15
MSH1YHR120W MIF2P35201 549 aa7.84□□□□□ -1.15
MSH1YHR120W DNF2Q12675 1612 aa7.82□□□□□ -1.16
MSH1YHR120W NUP157P40064 1391 aaKnown RBP7.81□□□□□ -1.16
MSH1YHR120W IQG1Q12280 1495 aa7.81□□□□□ -1.16
MSH1YHR120W DOP1Q03921 1698 aa7.8□□□□□ -1.16
MSH1YHR120W ABP1P15891 592 aaKnown RBP7.8□□□□□ -1.16
MSH1YHR120W TAF7Q05021 590 aa7.8□□□□□ -1.16
MSH1YHR120W PDR10P51533 1564 aa7.79□□□□□ -1.16
MSH1YHR120W TRM3Q07527 1436 aa7.78□□□□□ -1.16
MSH1YHR120W BUD3P25558 1636 aa7.76□□□□□ -1.17
MSH1YHR120W GEA1P47102 1408 aaPredicted RBP7.75□□□□□ -1.17
MSH1YHR120W TY3B-GQ99315 1547 aa7.75□□□□□ -1.17
MSH1YHR120W IFH1P39520 1085 aa7.75□□□□□ -1.17
MSH1YHR120W YBT1P32386 1661 aa7.74□□□□□ -1.17
MSH1YHR120W CAT8P39113 1433 aa7.73□□□□□ -1.17
MSH1YHR120W ARO1P08566 1588 aaKnown RBP7.71□□□□□ -1.17
MSH1YHR120W CHC1P22137 1653 aaKnown RBP7.71□□□□□ -1.18
MSH1YHR120W YSP2Q06681 1438 aa7.64□□□□□ -1.19
MSH1YHR120W YOR093CQ12275 1648 aa7.63□□□□□ -1.19
MSH1YHR120W SEC7P11075 2009 aaKnown RBP7.63□□□□□ -1.19
MSH1YHR120W CKB1P43639 278 aa7.6□□□□□ -1.19
MSH1YHR120W YFR006WP43590 535 aa7.59□□□□□ -1.19
MSH1YHR120W BNR1P40450 1375 aa7.59□□□□□ -1.19
MSH1YHR120W DNF3Q12674 1656 aa7.57□□□□□ -1.2
MSH1YHR120W SRB8P25648 1427 aa7.55□□□□□ -1.2
MSH1YHR120W YAP3P38749 330 aa7.5□□□□□ -1.21
MSH1YHR120W PRY3P47033 881 aa7.49□□□□□ -1.21
MSH1YHR120W IKI3Q06706 1349 aaKnown RBP7.45□□□□□ -1.22
MSH1YHR120W NUP188P52593 1655 aaKnown RBP7.44□□□□□ -1.22
MSH1YHR120W BUD21Q08492 214 aaPredicted RBP7.44□□□□□ -1.22
MSH1YHR120W URN1Q06525 465 aaKnown RBP7.43□□□□□ -1.22
MSH1YHR120W VMR1P38735 1592 aa7.42□□□□□ -1.22
MSH1YHR120W MAK10Q02197 733 aa7.41□□□□□ -1.22
MSH1YHR120W IML1P47170 1584 aa7.4□□□□□ -1.22
MSH1YHR120W HAP1P0CE41 1502 aa7.39□□□□□ -1.23
MSH1YHR120W SSM4P40318 1319 aa7.39□□□□□ -1.23
MSH1YHR120W IPL1P38991 367 aa7.38□□□□□ -1.23
MSH1YHR120W USO1P25386 1790 aa7.37□□□□□ -1.23
MSH1YHR120W TYS1P36421 394 aaKnown RBP7.35□□□□□ -1.23
MSH1YHR120W PDR5P33302 1511 aaKnown RBP7.35□□□□□ -1.23
MSH1YHR120W GCN2P15442 1659 aa7.33□□□□□ -1.24
MSH1YHR120W TY1B-NL2Q99337 1749 aaKnown RBP7.3□□□□□ -1.24
MSH1YHR120W PDR11P40550 1411 aa7.29□□□□□ -1.24
MSH1YHR120W YMR196WQ04336 1088 aa7.24□□□□□ -1.25
MSH1YHR120W THI12P42883 340 aa7.23□□□□□ -1.25
MSH1YHR120W THI5P43534 340 aa7.23□□□□□ -1.25
MSH1YHR120W THI11P47183 340 aa7.23□□□□□ -1.25
MSH1YHR120W THI13Q07748 340 aa7.23□□□□□ -1.25
MSH1YHR120W AAD16Q02895 342 aa7.21□□□□□ -1.26
MSH1YHR120W RAV1P47104 1357 aa7.19□□□□□ -1.26
MSH1YHR120W PRI1P10363 409 aa7.19□□□□□ -1.26
MSH1YHR120W KRE5P22023 1365 aa7.18□□□□□ -1.26
MSH1YHR120W CFT1Q06632 1357 aaKnown RBP7.18□□□□□ -1.26
MSH1YHR120W BCK1Q01389 1478 aa7.17□□□□□ -1.26
MSH1YHR120W NUP192P47054 1683 aa7.16□□□□□ -1.26
MSH1YHR120W PAF1P38351 445 aa7.15□□□□□ -1.26
MSH1YHR120W RIA1P53893 1110 aa7.14□□□□□ -1.27
MSH1YHR120W RTC1Q08281 1341 aa7.14□□□□□ -1.27
MSH1YHR120W MRX12P47084 519 aa7.13□□□□□ -1.27
MSH1YHR120W BFR2Q06631 534 aaKnown RBP7.13□□□□□ -1.27
MSH1YHR120W RAD9P14737 1309 aa7.11□□□□□ -1.27
MSH1YHR120W YNR029CP53729 429 aaKnown RBP7.1□□□□□ -1.27
MSH1YHR120W NOP7P53261 605 aaKnown RBP7.09□□□□□ -1.27
MSH1YHR120W CAB1Q04430 367 aa7.09□□□□□ -1.27
MSH1YHR120W ALD4P46367 519 aaKnown RBP7.09□□□□□ -1.27
MSH1YHR120W YCK3P39962 524 aa7.08□□□□□ -1.28
MSH1YHR120W HAA1Q12753 694 aaKnown RBP7.07□□□□□ -1.28
MSH1YHR120W TY3B-IQ7LHG5 1498 aaKnown RBP7.05□□□□□ -1.28
MSH1YHR120W PTP3P40048 928 aa7.05□□□□□ -1.28
MSH1YHR120W YAH1Q12184 172 aaKnown RBP7.03□□□□□ -1.28
MSH1YHR120W ESL2P36168 1195 aa7□□□□□ -1.29
MSH1YHR120W TAF5P38129 798 aa7□□□□□ -1.29
MSH1YHR120W APP1P53933 587 aa7□□□□□ -1.29
MSH1YHR120W TAF8Q03750 510 aa6.99□□□□□ -1.29
MSH1YHR120W NAP1P25293 417 aaKnown RBP6.97□□□□□ -1.29
MSH1YHR120W REB1P21538 810 aa6.96□□□□□ -1.3
Retrieved 100 of 5,963 RNA–protein pairs in 11.9 ms