RNA–Protein interactions for RNA: YDR432W

NPL3, Transcript of RNA-binding protein, yeast

Gene NPL3, Length 1,245 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NPL3	YDR432W	TSC11	P40061	1430 aa		21.06	■□□□□ 0.96
NPL3	YDR432W	ITT1	Q04638	464 aa		21.06	■□□□□ 0.96
NPL3	YDR432W	VTH1	P40438	1549 aa		21.05	■□□□□ 0.96
NPL3	YDR432W	VTH2	P40890	1549 aa		21.05	■□□□□ 0.96
NPL3	YDR432W	VPS15	P22219	1454 aa		21.03	■□□□□ 0.96
NPL3	YDR432W	RPO21	P04050	1733 aa	Known RBP	20.98	■□□□□ 0.95
NPL3	YDR432W	DRS2	P39524	1355 aa		20.93	■□□□□ 0.94
NPL3	YDR432W	MYO4	P32492	1471 aa		20.93	■□□□□ 0.94
NPL3	YDR432W	MMS1	Q06211	1407 aa		20.89	■□□□□ 0.94
NPL3	YDR432W	YTA7	P40340	1379 aa		20.81	■□□□□ 0.92
NPL3	YDR432W	ABP1	P15891	592 aa	Known RBP	20.79	■□□□□ 0.92
NPL3	YDR432W	SNQ2	P32568	1501 aa	Known RBP	20.76	■□□□□ 0.91
NPL3	YDR432W	SNT2	P53127	1403 aa		20.75	■□□□□ 0.91
NPL3	YDR432W	IRC20	Q06554	1556 aa		20.67	■□□□□ 0.9
NPL3	YDR432W	NUP170	P38181	1502 aa		20.65	■□□□□ 0.9
NPL3	YDR432W	STH1	P32597	1359 aa		20.65	■□□□□ 0.9
NPL3	YDR432W	DNF2	Q12675	1612 aa		20.59	■□□□□ 0.89
NPL3	YDR432W	SPO14	P36126	1683 aa		20.58	■□□□□ 0.89
NPL3	YDR432W	MET10	P39692	1035 aa		20.57	■□□□□ 0.88
NPL3	YDR432W	ULS1	Q08562	1619 aa		20.56	■□□□□ 0.88
NPL3	YDR432W	PDR12	Q02785	1511 aa		20.52	■□□□□ 0.87
NPL3	YDR432W	MLP2	P40457	1679 aa		20.49	■□□□□ 0.87
NPL3	YDR432W	RTT106	P40161	455 aa		20.44	■□□□□ 0.86
NPL3	YDR432W	YFR006W	P43590	535 aa		20.43	■□□□□ 0.86
NPL3	YDR432W	GDB1	Q06625	1536 aa		20.37	■□□□□ 0.85
NPL3	YDR432W	DOP1	Q03921	1698 aa		20.35	■□□□□ 0.85
NPL3	YDR432W	TRM3	Q07527	1436 aa		20.35	■□□□□ 0.85
NPL3	YDR432W	IQG1	Q12280	1495 aa		20.32	■□□□□ 0.84
NPL3	YDR432W	PDR10	P51533	1564 aa		20.27	■□□□□ 0.84
NPL3	YDR432W	BUD3	P25558	1636 aa		20.26	■□□□□ 0.83
NPL3	YDR432W	NUP157	P40064	1391 aa	Known RBP	20.25	■□□□□ 0.83
NPL3	YDR432W	PDR15	Q04182	1529 aa	Known RBP	20.24	■□□□□ 0.83
NPL3	YDR432W	YOR093C	Q12275	1648 aa		20.13	■□□□□ 0.81
NPL3	YDR432W	TAF7	Q05021	590 aa		20.09	■□□□□ 0.81
NPL3	YDR432W	SAS10	Q12136	610 aa	Predicted RBP	20.05	■□□□□ 0.8
NPL3	YDR432W	CHC1	P22137	1653 aa	Known RBP	20.05	■□□□□ 0.8
NPL3	YDR432W	ARO1	P08566	1588 aa	Known RBP	20.01	■□□□□ 0.79
NPL3	YDR432W	CAT8	P39113	1433 aa		19.92	■□□□□ 0.78
NPL3	YDR432W	IFH1	P39520	1085 aa		19.86	■□□□□ 0.77
NPL3	YDR432W	SEC7	P11075	2009 aa	Known RBP	19.86	■□□□□ 0.77
NPL3	YDR432W	YBT1	P32386	1661 aa		19.83	■□□□□ 0.76
NPL3	YDR432W	GEA1	P47102	1408 aa	Predicted RBP	19.83	■□□□□ 0.76
NPL3	YDR432W	DNF3	Q12674	1656 aa		19.81	■□□□□ 0.76
NPL3	YDR432W	TY3B-G	Q99315	1547 aa		19.77	■□□□□ 0.76
NPL3	YDR432W	YSP2	Q06681	1438 aa		19.69	■□□□□ 0.74
NPL3	YDR432W	BNR1	P40450	1375 aa		19.66	■□□□□ 0.74
NPL3	YDR432W	YAP3	P38749	330 aa		19.65	■□□□□ 0.74
NPL3	YDR432W	CKB1	P43639	278 aa		19.61	■□□□□ 0.73
NPL3	YDR432W	URN1	Q06525	465 aa	Known RBP	19.49	■□□□□ 0.71
NPL3	YDR432W	MAK10	Q02197	733 aa		19.45	■□□□□ 0.7
NPL3	YDR432W	SRB8	P25648	1427 aa		19.4	■□□□□ 0.7
NPL3	YDR432W	USO1	P25386	1790 aa		19.3	■□□□□ 0.68
NPL3	YDR432W	HAP1	P0CE41	1502 aa		19.3	■□□□□ 0.68
NPL3	YDR432W	NUP188	P52593	1655 aa	Known RBP	19.21	■□□□□ 0.67
NPL3	YDR432W	IML1	P47170	1584 aa		19.19	■□□□□ 0.66
NPL3	YDR432W	IPL1	P38991	367 aa		19.18	■□□□□ 0.66
NPL3	YDR432W	BUD21	Q08492	214 aa	Predicted RBP	19.16	■□□□□ 0.66
NPL3	YDR432W	TY1B-NL2	Q99337	1749 aa	Known RBP	19.15	■□□□□ 0.66
NPL3	YDR432W	YMR196W	Q04336	1088 aa		19.08	■□□□□ 0.64
NPL3	YDR432W	VMR1	P38735	1592 aa		19.06	■□□□□ 0.64
NPL3	YDR432W	TYS1	P36421	394 aa	Known RBP	19.01	■□□□□ 0.63
NPL3	YDR432W	THI12	P42883	340 aa		18.96	■□□□□ 0.63
NPL3	YDR432W	THI5	P43534	340 aa		18.96	■□□□□ 0.63
NPL3	YDR432W	THI11	P47183	340 aa		18.96	■□□□□ 0.63
NPL3	YDR432W	THI13	Q07748	340 aa		18.96	■□□□□ 0.63
NPL3	YDR432W	PDR5	P33302	1511 aa	Known RBP	18.89	■□□□□ 0.61
NPL3	YDR432W	IKI3	Q06706	1349 aa	Known RBP	18.84	■□□□□ 0.61
NPL3	YDR432W	GCN2	P15442	1659 aa		18.71	■□□□□ 0.59
NPL3	YDR432W	PDR11	P40550	1411 aa		18.64	■□□□□ 0.57
NPL3	YDR432W	SSM4	P40318	1319 aa		18.63	■□□□□ 0.57
NPL3	YDR432W	CFT1	Q06632	1357 aa	Known RBP	18.6	■□□□□ 0.57
NPL3	YDR432W	YAH1	Q12184	172 aa	Known RBP	18.6	■□□□□ 0.57
NPL3	YDR432W	KRE5	P22023	1365 aa		18.56	■□□□□ 0.56
NPL3	YDR432W	MRX12	P47084	519 aa		18.53	■□□□□ 0.56
NPL3	YDR432W	RIA1	P53893	1110 aa		18.51	■□□□□ 0.55
NPL3	YDR432W	BCK1	Q01389	1478 aa		18.5	■□□□□ 0.55
NPL3	YDR432W	PTP3	P40048	928 aa		18.46	■□□□□ 0.55
NPL3	YDR432W	YNR029C	P53729	429 aa	Known RBP	18.45	■□□□□ 0.54
NPL3	YDR432W	RAV1	P47104	1357 aa		18.42	■□□□□ 0.54
NPL3	YDR432W	NUP192	P47054	1683 aa		18.42	■□□□□ 0.54
NPL3	YDR432W	GLN1	P32288	370 aa	Known RBP	18.39	■□□□□ 0.53
NPL3	YDR432W	APP1	P53933	587 aa		18.38	■□□□□ 0.53
NPL3	YDR432W	PAF1	P38351	445 aa		18.37	■□□□□ 0.53
NPL3	YDR432W	YIL055C	P40523	627 aa	Known RBP	18.35	■□□□□ 0.53
NPL3	YDR432W	CAB1	Q04430	367 aa		18.27	■□□□□ 0.52
NPL3	YDR432W	RTC1	Q08281	1341 aa		18.26	■□□□□ 0.51
NPL3	YDR432W	ALD4	P46367	519 aa	Known RBP	18.26	■□□□□ 0.51
NPL3	YDR432W	BFR2	Q06631	534 aa	Known RBP	18.25	■□□□□ 0.51
NPL3	YDR432W	RAD9	P14737	1309 aa		18.24	■□□□□ 0.51
NPL3	YDR432W	REB1	P21538	810 aa		18.21	■□□□□ 0.51
NPL3	YDR432W	TY3B-I	Q7LHG5	1498 aa	Known RBP	18.2	■□□□□ 0.5
NPL3	YDR432W	ENT1	Q12518	454 aa		18.14	■□□□□ 0.49
NPL3	YDR432W	YMR074C	Q04773	145 aa		18.11	■□□□□ 0.49
NPL3	YDR432W	YRF1-2	P40105	1681 aa		18.1	■□□□□ 0.49
NPL3	YDR432W	NOP7	P53261	605 aa	Known RBP	18.1	■□□□□ 0.49
NPL3	YDR432W	ENV9	Q08651	330 aa		18.08	■□□□□ 0.48
NPL3	YDR432W	RRP5	Q05022	1729 aa	Known RBP	18.07	■□□□□ 0.48
NPL3	YDR432W	NAP1	P25293	417 aa	Known RBP	18.07	■□□□□ 0.48
NPL3	YDR432W	PRI1	P10363	409 aa		18.05	■□□□□ 0.48
NPL3	YDR432W	IMH1	Q06704	911 aa	Known RBP	18.03	■□□□□ 0.48

Retrieved 100 of 5,963 RNA–protein pairs in 15.7 ms