RNA–Protein interactions for RNA: YDR080W

VPS41, Transcript of Subunit of the HOPS endocytic tethering complex, yeastyeast

Gene VPS41, Length 2,979 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS41YDR080W SET1P38827 1080 aaKnown RBP5.34□□□□□ -1.56
VPS41YDR080W EAP1P36041 632 aaKnown RBP5.33□□□□□ -1.56
VPS41YDR080W DCW1P36091 449 aa5.33□□□□□ -1.56
VPS41YDR080W GRE2Q12068 342 aaKnown RBP5.32□□□□□ -1.56
VPS41YDR080W DMA1P38823 416 aa5.31□□□□□ -1.56
VPS41YDR080W GUT1P32190 709 aa5.31□□□□□ -1.56
VPS41YDR080W NOP53Q12080 455 aaKnown RBP5.31□□□□□ -1.56
VPS41YDR080W YEL023CP39992 682 aa5.3□□□□□ -1.56
VPS41YDR080W HTA1P04911 132 aaKnown RBP5.29□□□□□ -1.56
VPS41YDR080W HTA2P04912 132 aa5.29□□□□□ -1.56
VPS41YDR080W ABP1P15891 592 aaKnown RBP5.29□□□□□ -1.56
VPS41YDR080W RTG1P32607 177 aa5.29□□□□□ -1.56
VPS41YDR080W ILV3P39522 585 aaKnown RBP5.29□□□□□ -1.56
VPS41YDR080W ATH1P48016 1211 aa5.28□□□□□ -1.56
VPS41YDR080W YNL035CP53962 389 aaKnown RBP5.28□□□□□ -1.56
VPS41YDR080W PTC4P38089 393 aa5.27□□□□□ -1.57
VPS41YDR080W SPA2P23201 1466 aaKnown RBP5.26□□□□□ -1.57
VPS41YDR080W HSL1P34244 1518 aa5.26□□□□□ -1.57
VPS41YDR080W YPR148CQ06523 435 aa5.26□□□□□ -1.57
VPS41YDR080W SEC61P32915 480 aa5.25□□□□□ -1.57
VPS41YDR080W YDR344CQ05510 147 aa5.25□□□□□ -1.57
VPS41YDR080W YGR273CP53329 174 aa5.25□□□□□ -1.57
VPS41YDR080W THO2P53552 1597 aaKnown RBP5.25□□□□□ -1.57
VPS41YDR080W JIP4Q03361 876 aa5.25□□□□□ -1.57
VPS41YDR080W SPT6P23615 1451 aaKnown RBP5.23□□□□□ -1.57
VPS41YDR080W NCR1Q12200 1170 aa5.23□□□□□ -1.57
VPS41YDR080W UBP14P38237 781 aaKnown RBP5.22□□□□□ -1.57
VPS41YDR080W MPH3P0CE00 602 aa5.22□□□□□ -1.57
VPS41YDR080W AI4P03878 556 aa5.21□□□□□ -1.58
VPS41YDR080W SAS10Q12136 610 aaPredicted RBP5.21□□□□□ -1.58
VPS41YDR080W SGS1P35187 1447 aa5.2□□□□□ -1.58
VPS41YDR080W MID1P41821 548 aa5.19□□□□□ -1.58
VPS41YDR080W YLR326WQ06170 240 aaKnown RBP5.19□□□□□ -1.58
VPS41YDR080W YDR090CQ03193 310 aa5.18□□□□□ -1.58
VPS41YDR080W PML39Q03760 334 aa5.18□□□□□ -1.58
VPS41YDR080W KEX1P09620 729 aa5.17□□□□□ -1.58
VPS41YDR080W YDL129WQ07555 291 aa5.16□□□□□ -1.58
VPS41YDR080W BMT6Q12291 365 aa5.16□□□□□ -1.58
VPS41YDR080W SLI15P38283 698 aa5.16□□□□□ -1.58
VPS41YDR080W YJL171CP46992 396 aa5.16□□□□□ -1.58
VPS41YDR080W PCS60P38137 543 aaKnown RBP RIP-Chip data5.15□□□□□ -1.58not detected
VPS41YDR080W SAP30P38429 201 aa5.15□□□□□ -1.58
VPS41YDR080W VHR2P40041 505 aa5.15□□□□□ -1.59
VPS41YDR080W BUD4P47136 1447 aa5.15□□□□□ -1.59
VPS41YDR080W VPS70P47161 811 aa5.14□□□□□ -1.59
VPS41YDR080W HIR3P47171 1648 aa5.13□□□□□ -1.59
VPS41YDR080W IFH1P39520 1085 aa5.13□□□□□ -1.59
VPS41YDR080W MDS3P53094 1487 aa5.12□□□□□ -1.59
VPS41YDR080W ECM5Q03214 1411 aa5.11□□□□□ -1.59
VPS41YDR080W MPC54Q08550 464 aa5.1□□□□□ -1.59
VPS41YDR080W REV3P14284 1504 aa5.08□□□□□ -1.6
VPS41YDR080W REF2P42073 533 aaPredicted RBP5.08□□□□□ -1.6
VPS41YDR080W PEX29Q03370 554 aa5.08□□□□□ -1.6
VPS41YDR080W PEP1P32319 1579 aa5.08□□□□□ -1.6
VPS41YDR080W TFG1P41895 735 aaPredicted RBP5.07□□□□□ -1.6
VPS41YDR080W CDC73Q06697 393 aa5.07□□□□□ -1.6
VPS41YDR080W ARH1P48360 493 aa5.07□□□□□ -1.6
VPS41YDR080W GAP1P19145 602 aaPredicted RBP5.06□□□□□ -1.6
VPS41YDR080W PRE3P38624 215 aa5.06□□□□□ -1.6
VPS41YDR080W COX6P00427 148 aa5.05□□□□□ -1.6
VPS41YDR080W RAD54P32863 898 aa5.04□□□□□ -1.6
VPS41YDR080W CHL1P22516 861 aaPredicted RBP5.03□□□□□ -1.6
VPS41YDR080W NMA111P53920 997 aa5.03□□□□□ -1.6
VPS41YDR080W DPL1Q05567 589 aa5.03□□□□□ -1.6
VPS41YDR080W ORC6P38826 435 aa5.03□□□□□ -1.6
VPS41YDR080W PBS2P08018 668 aa5.02□□□□□ -1.61
VPS41YDR080W RAM1P22007 431 aa5.02□□□□□ -1.61
VPS41YDR080W SSK2P53599 1579 aa5.02□□□□□ -1.61
VPS41YDR080W DSF2P38213 736 aa5.01□□□□□ -1.61
VPS41YDR080W YPR015CQ12531 247 aa5.01□□□□□ -1.61
VPS41YDR080W ATG2P53855 1592 aa5.01□□□□□ -1.61
VPS41YDR080W CKB1P43639 278 aa5.01□□□□□ -1.61
VPS41YDR080W HAP5Q02516 242 aa5.01□□□□□ -1.61
VPS41YDR080W BPT1P14772 1559 aa5□□□□□ -1.61
VPS41YDR080W MAK21Q12176 1025 aaKnown RBP4.99□□□□□ -1.61
VPS41YDR080W NUP42P49686 430 aaKnown RBP4.98□□□□□ -1.61
VPS41YDR080W BNI4P53858 892 aa4.98□□□□□ -1.61
VPS41YDR080W PDR1P12383 1068 aa4.98□□□□□ -1.61
VPS41YDR080W ELP4Q02884 456 aaKnown RBP4.98□□□□□ -1.61
VPS41YDR080W ISU2Q12056 156 aa4.96□□□□□ -1.61
VPS41YDR080W MVP1P40959 511 aaKnown RBP4.96□□□□□ -1.62
VPS41YDR080W RGR1P19263 1082 aa4.95□□□□□ -1.62
VPS41YDR080W SPT23P35210 1082 aa4.95□□□□□ -1.62
VPS41YDR080W YML082WQ04533 649 aaKnown RBP4.95□□□□□ -1.62
VPS41YDR080W XRN1P22147 1528 aaKnown RBP4.94□□□□□ -1.62
VPS41YDR080W SIN3P22579 1536 aa4.94□□□□□ -1.62
VPS41YDR080W DIT2P21595 489 aa4.94□□□□□ -1.62
VPS41YDR080W KIC1P38692 1080 aa4.94□□□□□ -1.62
VPS41YDR080W IES2P40154 320 aa4.93□□□□□ -1.62
VPS41YDR080W BCK2P33306 851 aa4.93□□□□□ -1.62
VPS41YDR080W VRP1P37370 817 aa4.93□□□□□ -1.62
VPS41YDR080W MAM3Q12296 706 aa4.93□□□□□ -1.62
VPS41YDR080W RQC2Q12532 1038 aaKnown RBP4.93□□□□□ -1.62
VPS41YDR080W YCF1P39109 1515 aaKnown RBP4.93□□□□□ -1.62
VPS41YDR080W CSC1Q06538 782 aa4.91□□□□□ -1.62
VPS41YDR080W STR2P47164 639 aa4.91□□□□□ -1.62
VPS41YDR080W TUM1Q08686 304 aaKnown RBP4.9□□□□□ -1.62
VPS41YDR080W PTC2P39966 464 aaKnown RBP4.9□□□□□ -1.63
VPS41YDR080W YRR1Q12172 810 aa4.9□□□□□ -1.63
VPS41YDR080W SDH2P21801 266 aa4.89□□□□□ -1.63
Retrieved 100 of 5,963 RNA–protein pairs in 8.5 ms