RNA–Protein interactions for RNA: NME1

NME1, Transcript of RNA component of RNase MRP, yeastyeast

Gene NME1, Length 340 nt, Biotype snoRNA.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NME1NME1 NUP42P49686 430 aaKnown RBP15.16■□□□□ 0.02
NME1NME1 KIN1P13185 1064 aa15.15■□□□□ 0.02
NME1NME1 GYP5Q12344 894 aa15.14■□□□□ 0.01
NME1NME1 DIT2P21595 489 aa15.13■□□□□ 0.01
NME1NME1 AIM7Q12156 149 aa15.13■□□□□ 0.01
NME1NME1 UBP14P38237 781 aaKnown RBP15.09■□□□□ 0.01
NME1NME1 YGR273CP53329 174 aa15.07■□□□□ 0
NME1NME1 KIC1P38692 1080 aa15.06■□□□□ 0
NME1NME1 YDR090CQ03193 310 aa15.06■□□□□ 0
NME1NME1 YLR326WQ06170 240 aaKnown RBP15.06■□□□□ 0
NME1NME1 ABP1P15891 592 aaKnown RBP15.03■□□□□ -0
NME1NME1 ATF2P53296 535 aa15.02■□□□□ -0
NME1NME1 YOL036WQ08206 761 aa15□□□□□ -0.01
NME1NME1 RAD54P32863 898 aa14.98□□□□□ -0.01
NME1NME1 DCW1P36091 449 aa14.97□□□□□ -0.01
NME1NME1 KEX1P09620 729 aa14.95□□□□□ -0.02
NME1NME1 SOL3P38858 249 aa14.95□□□□□ -0.02
NME1NME1 SET4P42948 560 aa14.94□□□□□ -0.02
NME1NME1 HTA1P04911 132 aaKnown RBP14.91□□□□□ -0.02
NME1NME1 HTA2P04912 132 aa14.91□□□□□ -0.02
NME1NME1 HGH1P48362 394 aaKnown RBP14.91□□□□□ -0.02
NME1NME1 PCS60P38137 543 aaKnown RBP RIP-Chip data14.89□□□□□ -0.03not detected
NME1NME1 MSB4Q12317 492 aa14.89□□□□□ -0.03
NME1NME1 PSE1P32337 1089 aaKnown RBP14.83□□□□□ -0.04
NME1NME1 NST1P53935 1240 aa14.83□□□□□ -0.04
NME1NME1 WSC3Q12215 556 aa14.82□□□□□ -0.04
NME1NME1 GUA1P38625 525 aaKnown RBP14.8□□□□□ -0.04
NME1NME1 AI4P03878 556 aa14.78□□□□□ -0.04
NME1NME1 MPH3P0CE00 602 aa14.78□□□□□ -0.04
NME1NME1 RLF2Q12495 606 aa14.78□□□□□ -0.04
NME1NME1 EAP1P36041 632 aaKnown RBP14.75□□□□□ -0.05
NME1NME1 ORC6P38826 435 aa14.73□□□□□ -0.05
NME1NME1 YEL023CP39992 682 aa14.72□□□□□ -0.05
NME1NME1 HPC2Q01448 625 aa14.7□□□□□ -0.06
NME1NME1 ILV3P39522 585 aaKnown RBP14.69□□□□□ -0.06
NME1NME1 DAN4P47179 1161 aa14.65□□□□□ -0.06
NME1NME1 RPP1BP10622 106 aaKnown RBP14.64□□□□□ -0.07
NME1NME1 TEA1P47988 759 aa14.64□□□□□ -0.07
NME1NME1 TRP5P00931 707 aaKnown RBP14.62□□□□□ -0.07
NME1NME1 PTC4P38089 393 aa14.62□□□□□ -0.07
NME1NME1 YBL029C-AQ3E756 94 aa14.62□□□□□ -0.07
NME1NME1 SSA2P10592 639 aaKnown RBP14.61□□□□□ -0.07
NME1NME1 SLI15P38283 698 aa14.6□□□□□ -0.07
NME1NME1 RGR1P19263 1082 aa14.59□□□□□ -0.07
NME1NME1 VNX1P42839 908 aa14.59□□□□□ -0.07
NME1NME1 CSN12P47130 423 aa14.59□□□□□ -0.07
NME1NME1 CLB5P30283 435 aa14.58□□□□□ -0.08
NME1NME1 BRL1P38770 471 aa14.58□□□□□ -0.08
NME1NME1 JIP4Q03361 876 aa14.58□□□□□ -0.08
NME1NME1 TFB3Q03290 321 aa14.57□□□□□ -0.08
NME1NME1 MVP1P40959 511 aaKnown RBP14.56□□□□□ -0.08
NME1NME1 CSC1Q06538 782 aa14.56□□□□□ -0.08
NME1NME1 TIF11P38912 153 aaKnown RBP14.55□□□□□ -0.08
NME1NME1 ULI1P43604 169 aa14.55□□□□□ -0.08
NME1NME1 GAP1P19145 602 aaPredicted RBP14.51□□□□□ -0.09
NME1NME1 UBP9P39967 754 aa14.51□□□□□ -0.09
NME1NME1 SPP1Q03012 353 aa14.51□□□□□ -0.09
NME1NME1 CDC73Q06697 393 aa14.47□□□□□ -0.09
NME1NME1 PEX21P50091 288 aa14.45□□□□□ -0.1
NME1NME1 TFB4Q12004 338 aa14.45□□□□□ -0.1
NME1NME1 YPR109WQ06104 294 aa14.43□□□□□ -0.1
NME1NME1 YNL035CP53962 389 aaKnown RBP14.41□□□□□ -0.1
NME1NME1 YMR196WQ04336 1088 aa14.41□□□□□ -0.1
NME1NME1 IOC2Q12072 812 aa14.4□□□□□ -0.1
NME1NME1 PKC1P24583 1151 aa14.39□□□□□ -0.11
NME1NME1 NIS1P53939 407 aa14.39□□□□□ -0.11
NME1NME1 KTR1P27810 393 aaKnown RBP14.38□□□□□ -0.11
NME1NME1 TYW1Q08960 810 aaKnown RBP14.38□□□□□ -0.11
NME1NME1 GLN1P32288 370 aaKnown RBP14.36□□□□□ -0.11
NME1NME1 PML39Q03760 334 aa14.36□□□□□ -0.11
NME1NME1 FPK1P53739 893 aa14.35□□□□□ -0.11
NME1NME1 DPL1Q05567 589 aa14.35□□□□□ -0.11
NME1NME1 HST2P53686 357 aa14.34□□□□□ -0.11
NME1NME1 MID1P41821 548 aa14.33□□□□□ -0.12
NME1NME1 TUM1Q08686 304 aaKnown RBP14.33□□□□□ -0.12
NME1NME1 RTG1P32607 177 aa14.3□□□□□ -0.12
NME1NME1 MPC54Q08550 464 aa14.3□□□□□ -0.12
NME1NME1 MMP1Q12372 583 aa14.3□□□□□ -0.12
NME1NME1 PEX29Q03370 554 aa14.29□□□□□ -0.12
NME1NME1 LDB19Q12502 818 aa14.29□□□□□ -0.12
NME1NME1 SEC61P32915 480 aa14.28□□□□□ -0.12
NME1NME1 YJL007CP47080 104 aa14.28□□□□□ -0.12
NME1NME1 SIT4P20604 311 aa14.24□□□□□ -0.13
NME1NME1 BIM1P40013 344 aa14.24□□□□□ -0.13
NME1NME1 TFG1P41895 735 aaPredicted RBP14.24□□□□□ -0.13
NME1NME1 PKH3Q03306 898 aaPredicted RBP14.24□□□□□ -0.13
NME1NME1 YBL036CP38197 257 aa14.23□□□□□ -0.13
NME1NME1 ISU2Q12056 156 aa14.23□□□□□ -0.13
NME1NME1 YRR1Q12172 810 aa14.23□□□□□ -0.13
NME1NME1 ESS1P22696 170 aa14.22□□□□□ -0.13
NME1NME1 SCJ1P25303 377 aa14.21□□□□□ -0.13
NME1NME1 RAD59Q12223 238 aa14.18□□□□□ -0.14
NME1NME1 RPL34BP40525 121 aaKnown RBP14.17□□□□□ -0.14
NME1NME1 NMA111P53920 997 aa14.17□□□□□ -0.14
NME1NME1 ATG32P40458 529 aa14.16□□□□□ -0.14
NME1NME1 NCR1Q12200 1170 aa14.15□□□□□ -0.14
NME1NME1 YJU3P28321 313 aa14.13□□□□□ -0.15
NME1NME1 YDL129WQ07555 291 aa14.13□□□□□ -0.15
NME1NME1 ARG8P18544 423 aa14.12□□□□□ -0.15
NME1NME1 CSE4P36012 229 aa14.12□□□□□ -0.15
Retrieved 100 of 5,963 RNA–protein pairs in 8.5 ms