RNA–Protein interactions for RNA: ENST00000640931.1

RTTN-223, Transcript of rotatin, human

TSL 5

Gene RTTN, Length 2,065 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RTTN-223	ENST00000640931	RAD54L2	Q9Y4B4	1467 aa		11.72	□□□□□ -0.53
RTTN-223	ENST00000640931	PLEKHG5	O94827	1062 aa		11.7	□□□□□ -0.54
RTTN-223	ENST00000640931	CLIP1	P30622	1438 aa		11.7	□□□□□ -0.54
RTTN-223	ENST00000640931	PRX	Q9BXM0	1461 aa		11.7	□□□□□ -0.54
RTTN-223	ENST00000640931	KIF27	Q86VH2	1401 aa		11.69	□□□□□ -0.54
RTTN-223	ENST00000640931	IGF1R	P08069	1367 aa		11.67	□□□□□ -0.54
RTTN-223	ENST00000640931	HOXD11	P31277	338 aa	Predicted RBP	11.66	□□□□□ -0.54
RTTN-223	ENST00000640931	PODXL2	Q9NZ53	605 aa		11.66	□□□□□ -0.54
RTTN-223	ENST00000640931	CLSPN	Q9HAW4	1339 aa		11.66	□□□□□ -0.54
RTTN-223	ENST00000640931	URB2	Q14146	1524 aa	Known RBP	11.66	□□□□□ -0.54
RTTN-223	ENST00000640931	TOPBP1	Q92547	1522 aa		11.66	□□□□□ -0.54
RTTN-223	ENST00000640931	ERICH6B	Q5W0A0	696 aa		11.66	□□□□□ -0.54
RTTN-223	ENST00000640931	PKNOX2	Q96KN3	472 aa		11.64	□□□□□ -0.55
RTTN-223	ENST00000640931	MYT1L	Q9UL68	1186 aa		11.64	□□□□□ -0.55
RTTN-223	ENST00000640931	POLA1	P09884	1462 aa	Predicted RBP	11.64	□□□□□ -0.55
RTTN-223	ENST00000640931	DNMBP	Q6XZF7	1577 aa		11.62	□□□□□ -0.55
RTTN-223	ENST00000640931	RNF39	Q9H2S5	420 aa		11.62	□□□□□ -0.55
RTTN-223	ENST00000640931	DCAF8L1	A6NGE4	600 aa		11.61	□□□□□ -0.55
RTTN-223	ENST00000640931	KIF21A	Q7Z4S6	1674 aa		11.61	□□□□□ -0.55
RTTN-223	ENST00000640931	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	11.6	□□□□□ -0.55
RTTN-223	ENST00000640931	TSHZ2	Q9NRE2	1034 aa		11.6	□□□□□ -0.55
RTTN-223	ENST00000640931	LAMC3	Q9Y6N6	1575 aa		11.6	□□□□□ -0.55
RTTN-223	ENST00000640931	CARMIL1	Q5VZK9	1371 aa		11.59	□□□□□ -0.55
RTTN-223	ENST00000640931	TDRD9	Q8NDG6	1382 aa	Known RBP	11.59	□□□□□ -0.55
RTTN-223	ENST00000640931	ARAP1	Q96P48	1450 aa		11.59	□□□□□ -0.55
RTTN-223	ENST00000640931	ERICH3	Q5RHP9	1530 aa		11.59	□□□□□ -0.55
RTTN-223	ENST00000640931	P3H3	Q8IVL6	736 aa		11.58	□□□□□ -0.56
RTTN-223	ENST00000640931	VPS8	Q8N3P4	1428 aa		11.57	□□□□□ -0.56
RTTN-223	ENST00000640931	PPP4R3CP	Q6ZMV5	832 aa		11.56	□□□□□ -0.56
RTTN-223	ENST00000640931	PDS5B	Q9NTI5	1447 aa		11.56	□□□□□ -0.56
RTTN-223	ENST00000640931	KANK4	Q5T7N3	995 aa	Predicted RBP	11.55	□□□□□ -0.56
RTTN-223	ENST00000640931	ABCA10	Q8WWZ4	1543 aa		11.54	□□□□□ -0.56
RTTN-223	ENST00000640931	ARHGAP35	Q9NRY4	1499 aa		11.54	□□□□□ -0.56
RTTN-223	ENST00000640931	C1QBP	Q07021	282 aa	Known RBP	11.52	□□□□□ -0.57
RTTN-223	ENST00000640931	HNRNPUL2	Q1KMD3	747 aa	Known RBP	11.52	□□□□□ -0.57
RTTN-223	ENST00000640931	SALL2	Q9Y467	1007 aa	Predicted RBP	11.51	□□□□□ -0.57
RTTN-223	ENST00000640931	DIEXF	Q68CQ4	756 aa	Known RBP	11.5	□□□□□ -0.57
RTTN-223	ENST00000640931	CNKSR2	Q8WXI2	1034 aa		11.5	□□□□□ -0.57
RTTN-223	ENST00000640931	RNF216	Q9NWF9	866 aa	Predicted RBP	11.49	□□□□□ -0.57
RTTN-223	ENST00000640931	AQR	O60306	1485 aa	Known RBP eCLIP	11.47	□□□□□ -0.57	5e-8	■■■■■ 34.8
RTTN-223	ENST00000640931	WDR97	A6NE52	1622 aa		11.47	□□□□□ -0.57
RTTN-223	ENST00000640931	CCER1	Q8TC90	406 aa	Predicted RBP	11.46	□□□□□ -0.57
RTTN-223	ENST00000640931	ATP1B4	Q9UN42	357 aa	Predicted RBP	11.45	□□□□□ -0.58
RTTN-223	ENST00000640931	GAPVD1	Q14C86	1478 aa		11.45	□□□□□ -0.58
RTTN-223	ENST00000640931	TARBP1	Q13395	1621 aa	Known RBP	11.44	□□□□□ -0.58
RTTN-223	ENST00000640931	ABCA5	Q8WWZ7	1642 aa		11.44	□□□□□ -0.58
RTTN-223	ENST00000640931	ZNF608	Q9ULD9	1512 aa	Predicted RBP	11.44	□□□□□ -0.58
RTTN-223	ENST00000640931	MRC2	Q9UBG0	1479 aa		11.44	□□□□□ -0.58
RTTN-223	ENST00000640931	FHOD3	Q2V2M9	1422 aa		11.44	□□□□□ -0.58
RTTN-223	ENST00000640931	NEFL	P07196	543 aa		11.41	□□□□□ -0.58
RTTN-223	ENST00000640931	NCBP3	Q53F19	620 aa	Known RBP	11.41	□□□□□ -0.58
RTTN-223	ENST00000640931	THOC2	Q8NI27	1593 aa	Known RBP	11.4	□□□□□ -0.59
RTTN-223	ENST00000640931	CCDC136	Q96JN2	1154 aa		11.38	□□□□□ -0.59
RTTN-223	ENST00000640931	SUPT16H	Q9Y5B9	1047 aa	Known RBP	11.37	□□□□□ -0.59
RTTN-223	ENST00000640931	CUL7	Q14999	1698 aa		11.37	□□□□□ -0.59
RTTN-223	ENST00000640931	ITGAE	P38570	1179 aa		11.37	□□□□□ -0.59
RTTN-223	ENST00000640931	OSCAR	Q8IYS5	282 aa		11.36	□□□□□ -0.59
RTTN-223	ENST00000640931	PCF11	O94913	1555 aa	Known RBP	11.35	□□□□□ -0.59
RTTN-223	ENST00000640931	WDR62	O43379	1518 aa		11.34	□□□□□ -0.59
RTTN-223	ENST00000640931	DEK	P35659	375 aa	Known RBP	11.34	□□□□□ -0.59
RTTN-223	ENST00000640931	PBRM1	Q86U86	1689 aa		11.33	□□□□□ -0.6
RTTN-223	ENST00000640931	ARID3C	A6NKF2	412 aa		11.33	□□□□□ -0.6
RTTN-223	ENST00000640931	ILDR1	Q86SU0	546 aa	Predicted RBP	11.33	□□□□□ -0.6
RTTN-223	ENST00000640931	CTTNBP2	Q8WZ74	1663 aa		11.33	□□□□□ -0.6
RTTN-223	ENST00000640931	ARX	Q96QS3	562 aa		11.31	□□□□□ -0.6
RTTN-223	ENST00000640931	TIAM1	Q13009	1591 aa		11.3	□□□□□ -0.6
RTTN-223	ENST00000640931	IFT140	Q96RY7	1462 aa		11.3	□□□□□ -0.6
RTTN-223	ENST00000640931	PHLDB1	Q86UU1	1377 aa		11.29	□□□□□ -0.6
RTTN-223	ENST00000640931	SNAPC4	Q5SXM2	1469 aa		11.29	□□□□□ -0.6
RTTN-223	ENST00000640931	ADAMTS12	P58397	1594 aa		11.29	□□□□□ -0.6
RTTN-223	ENST00000640931	FHAD1	B1AJZ9	1412 aa		11.28	□□□□□ -0.6
RTTN-223	ENST00000640931	FBLN2	P98095	1184 aa		11.28	□□□□□ -0.6
RTTN-223	ENST00000640931	GRIN2B	Q13224	1484 aa		11.28	□□□□□ -0.6
RTTN-223	ENST00000640931	LRRC9	Q6ZRR7	1453 aa		11.28	□□□□□ -0.6
RTTN-223	ENST00000640931	EIF4G3	O43432	1585 aa	Known RBP	11.26	□□□□□ -0.61
RTTN-223	ENST00000640931	RIMBP3C	A6NJZ7	1639 aa		11.25	□□□□□ -0.61
RTTN-223	ENST00000640931	RIMBP3B	A6NNM3	1639 aa		11.25	□□□□□ -0.61
RTTN-223	ENST00000640931	RIMBP3	Q9UFD9	1639 aa		11.25	□□□□□ -0.61
RTTN-223	ENST00000640931	TRH	P20396	242 aa	Predicted RBP	11.25	□□□□□ -0.61
RTTN-223	ENST00000640931	FAM50A	Q14320	339 aa	Known RBP	11.25	□□□□□ -0.61
RTTN-223	ENST00000640931	RRBP1	Q9P2E9	1410 aa	Known RBP	11.25	□□□□□ -0.61
RTTN-223	ENST00000640931	CCNB3	Q8WWL7	1395 aa		11.25	□□□□□ -0.61
RTTN-223	ENST00000640931	PDIA4	P13667	645 aa	Known RBP	11.24	□□□□□ -0.61
RTTN-223	ENST00000640931	CASKIN1	Q8WXD9	1431 aa		11.24	□□□□□ -0.61
RTTN-223	ENST00000640931	SAMD9	Q5K651	1589 aa		11.24	□□□□□ -0.61
RTTN-223	ENST00000640931	EFCAB5	A4FU69	1503 aa		11.24	□□□□□ -0.61
RTTN-223	ENST00000640931	PDE4C	Q08493	712 aa		11.24	□□□□□ -0.61
RTTN-223	ENST00000640931	GLIPR1L2	Q4G1C9	344 aa		11.23	□□□□□ -0.61
RTTN-223	ENST00000640931	YTHDC1	Q96MU7	727 aa	Known RBP	11.23	□□□□□ -0.61
RTTN-223	ENST00000640931	LRRIQ1	Q96JM4	1722 aa		11.23	□□□□□ -0.61
RTTN-223	ENST00000640931	RBM19	Q9Y4C8	960 aa	Known RBP	11.22	□□□□□ -0.61
RTTN-223	ENST00000640931	CFAP43	Q8NDM7	1665 aa		11.21	□□□□□ -0.61
RTTN-223	ENST00000640931	FYCO1	Q9BQS8	1478 aa		11.21	□□□□□ -0.62
RTTN-223	ENST00000640931	CHMP7	Q8WUX9	453 aa	Predicted RBP	11.2	□□□□□ -0.62
RTTN-223	ENST00000640931	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	11.2	□□□□□ -0.62
RTTN-223	ENST00000640931	IQGAP2	Q13576	1575 aa		11.2	□□□□□ -0.62
RTTN-223	ENST00000640931	FANCI	Q9NVI1	1328 aa		11.19	□□□□□ -0.62
RTTN-223	ENST00000640931	FMN1	Q68DA7	1419 aa		11.19	□□□□□ -0.62
RTTN-223	ENST00000640931	MAP3K1	Q13233	1512 aa		11.18	□□□□□ -0.62
RTTN-223	ENST00000640931	MAGI3	Q5TCQ9	1506 aa		11.18	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms