RNA–Protein interactions for RNA: ENST00000640652.1

SCN3A-210, Transcript of sodium voltage-gated channel alpha subunit 3, humanhuman

TSL 5

Gene SCN3A, Length 8,825 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3A-210ENST00000640652 CFTRP13569 1480 aa7.82□□□□□ -1.16
SCN3A-210ENST00000640652 MAP3K1Q13233 1512 aa7.82□□□□□ -1.16
SCN3A-210ENST00000640652 PRXQ9BXM0 1461 aa7.81□□□□□ -1.16
SCN3A-210ENST00000640652 FMN1Q68DA7 1419 aa7.81□□□□□ -1.16
SCN3A-210ENST00000640652 FYCO1Q9BQS8 1478 aa7.8□□□□□ -1.16
SCN3A-210ENST00000640652 SETD5Q9C0A6 1442 aa7.8□□□□□ -1.16
SCN3A-210ENST00000640652 RRBP1Q9P2E9 1410 aaKnown RBP7.8□□□□□ -1.16
SCN3A-210ENST00000640652 DNMBPQ6XZF7 1577 aa7.8□□□□□ -1.16
SCN3A-210ENST00000640652 POLR1AO95602 1720 aaPredicted RBP7.79□□□□□ -1.16
SCN3A-210ENST00000640652 MTUS2Q5JR59 1369 aa7.79□□□□□ -1.16
SCN3A-210ENST00000640652 CARMIL1Q5VZK9 1371 aa7.78□□□□□ -1.16
SCN3A-210ENST00000640652 PCF11O94913 1555 aaKnown RBP7.78□□□□□ -1.16
SCN3A-210ENST00000640652 FGD5Q6ZNL6 1462 aa7.78□□□□□ -1.16
SCN3A-210ENST00000640652 PBRM1Q86U86 1689 aa7.77□□□□□ -1.17
SCN3A-210ENST00000640652 DHX57Q6P158 1386 aaKnown RBP7.76□□□□□ -1.17
SCN3A-210ENST00000640652 TIMELESSQ9UNS1 1208 aa7.76□□□□□ -1.17
SCN3A-210ENST00000640652 HECW1Q76N89 1606 aa7.76□□□□□ -1.17
SCN3A-210ENST00000640652 LRRC9Q6ZRR7 1453 aa7.76□□□□□ -1.17
SCN3A-210ENST00000640652 RAB3GAP2Q9H2M9 1393 aa7.76□□□□□ -1.17
SCN3A-210ENST00000640652 THOC2Q8NI27 1593 aaKnown RBP7.75□□□□□ -1.17
SCN3A-210ENST00000640652 GCC2Q8IWJ2 1684 aa7.74□□□□□ -1.17
SCN3A-210ENST00000640652 CADPSQ9ULU8 1353 aa7.74□□□□□ -1.17
SCN3A-210ENST00000640652 CCDC18Q5T9S5 1454 aa7.73□□□□□ -1.17
SCN3A-210ENST00000640652 FANCD2Q9BXW9 1451 aa7.73□□□□□ -1.17
SCN3A-210ENST00000640652 ITSN2Q9NZM3 1697 aa7.72□□□□□ -1.17
SCN3A-210ENST00000640652 LAMC3Q9Y6N6 1575 aa7.72□□□□□ -1.17
SCN3A-210ENST00000640652 EHBP1L1Q8N3D4 1523 aa7.72□□□□□ -1.17
SCN3A-210ENST00000640652 ADGBQ8N7X0 1667 aa7.7□□□□□ -1.18
SCN3A-210ENST00000640652 WDR97A6NE52 1622 aa7.7□□□□□ -1.18
SCN3A-210ENST00000640652 KANK4Q5T7N3 995 aaPredicted RBP7.7□□□□□ -1.18
SCN3A-210ENST00000640652 AQRO60306 1485 aaKnown RBP eCLIP7.7□□□□□ -1.18
SCN3A-210ENST00000640652 CASKIN1Q8WXD9 1431 aa7.7□□□□□ -1.18
SCN3A-210ENST00000640652 PTPN23Q9H3S7 1636 aa7.7□□□□□ -1.18
SCN3A-210ENST00000640652 P3H3Q8IVL6 736 aa7.7□□□□□ -1.18
SCN3A-210ENST00000640652 TRIM52Q96A61 297 aa7.69□□□□□ -1.18
SCN3A-210ENST00000640652 CDK11AQ9UQ88 783 aaPredicted RBP7.69□□□□□ -1.18
SCN3A-210ENST00000640652 DDX10Q13206 875 aaKnown RBP7.68□□□□□ -1.18
SCN3A-210ENST00000640652 ABCA10Q8WWZ4 1543 aa7.67□□□□□ -1.18
SCN3A-210ENST00000640652 PDS5BQ9NTI5 1447 aa7.67□□□□□ -1.18
SCN3A-210ENST00000640652 LRRIQ1Q96JM4 1722 aa7.67□□□□□ -1.18
SCN3A-210ENST00000640652 SUPT16HQ9Y5B9 1047 aaKnown RBP7.67□□□□□ -1.18
SCN3A-210ENST00000640652 FHOD3Q2V2M9 1422 aa7.67□□□□□ -1.18
SCN3A-210ENST00000640652 TOPBP1Q92547 1522 aa7.66□□□□□ -1.18
SCN3A-210ENST00000640652 CCER2I3L3R5 266 aa7.66□□□□□ -1.18
SCN3A-210ENST00000640652 FGD6Q6ZV73 1430 aa7.66□□□□□ -1.18
SCN3A-210ENST00000640652 FKBP8Q14318 412 aa7.65□□□□□ -1.18
SCN3A-210ENST00000640652 BCANQ96GW7 911 aa7.65□□□□□ -1.18
SCN3A-210ENST00000640652 NESP48681 1621 aa7.65□□□□□ -1.18
SCN3A-210ENST00000640652 IQGAP2Q13576 1575 aa7.65□□□□□ -1.18
SCN3A-210ENST00000640652 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP7.65□□□□□ -1.18
SCN3A-210ENST00000640652 GAPVD1Q14C86 1478 aa7.64□□□□□ -1.19
SCN3A-210ENST00000640652 MYOM3Q5VTT5 1437 aa7.64□□□□□ -1.19
SCN3A-210ENST00000640652 IGF1RP08069 1367 aa7.64□□□□□ -1.19
SCN3A-210ENST00000640652 MYT1LQ9UL68 1186 aa7.64□□□□□ -1.19
SCN3A-210ENST00000640652 POLA1P09884 1462 aaPredicted RBP7.64□□□□□ -1.19
SCN3A-210ENST00000640652 UACAQ9BZF9 1416 aa7.63□□□□□ -1.19
SCN3A-210ENST00000640652 SAMD9Q5K651 1589 aa7.63□□□□□ -1.19
SCN3A-210ENST00000640652 ABCA5Q8WWZ7 1642 aa7.63□□□□□ -1.19
SCN3A-210ENST00000640652 MAPKBP1O60336 1514 aa7.62□□□□□ -1.19
SCN3A-210ENST00000640652 HNRNPUQ00839 825 aaKnown RBP eCLIP7.62□□□□□ -1.19
SCN3A-210ENST00000640652 HFM1A2PYH4 1435 aa7.61□□□□□ -1.19
SCN3A-210ENST00000640652 EIF4G2P78344 907 aaKnown RBP eCLIP7.61□□□□□ -1.19
SCN3A-210ENST00000640652 PHLDB1Q86UU1 1377 aa7.61□□□□□ -1.19
SCN3A-210ENST00000640652 NCOA2Q15596 1464 aa7.6□□□□□ -1.19
SCN3A-210ENST00000640652 RAD54L2Q9Y4B4 1467 aa7.59□□□□□ -1.19
SCN3A-210ENST00000640652 POLR3GLQ9BT43 218 aa7.58□□□□□ -1.2
SCN3A-210ENST00000640652 RTL5Q5HYW3 569 aaPredicted RBP7.58□□□□□ -1.2
SCN3A-210ENST00000640652 CFAP65Q6ZU64 1925 aaKnown RBP7.57□□□□□ -1.2
SCN3A-210ENST00000640652 ERICH6BQ5W0A0 696 aa7.56□□□□□ -1.2
SCN3A-210ENST00000640652 SIN3AQ96ST3 1273 aa7.56□□□□□ -1.2
SCN3A-210ENST00000640652 DAXXQ9UER7 740 aaPredicted RBP7.56□□□□□ -1.2
SCN3A-210ENST00000640652 ANP32EQ9BTT0 268 aa7.55□□□□□ -1.2
SCN3A-210ENST00000640652 ANP32AP39687 249 aaKnown RBP7.55□□□□□ -1.2
SCN3A-210ENST00000640652 CROCC2H7BZ55 1655 aa7.55□□□□□ -1.2
SCN3A-210ENST00000640652 RAPGEF6Q8TEU7 1601 aa7.55□□□□□ -1.2
SCN3A-210ENST00000640652 RRP7BPQ9NSQ0 103 aa7.55□□□□□ -1.2
SCN3A-210ENST00000640652 UGGT2Q9NYU1 1516 aa7.55□□□□□ -1.2
SCN3A-210ENST00000640652 ZNF326Q5BKZ1 582 aaKnown RBP7.55□□□□□ -1.2
SCN3A-210ENST00000640652 DNMT1P26358 1616 aaKnown RBP7.54□□□□□ -1.2
SCN3A-210ENST00000640652 PPP1R15AO75807 674 aaPredicted RBP7.54□□□□□ -1.2
SCN3A-210ENST00000640652 MRS2Q9HD23 443 aa7.54□□□□□ -1.2
SCN3A-210ENST00000640652 CHIC2Q9UKJ5 165 aa7.54□□□□□ -1.2
SCN3A-210ENST00000640652 ERCC6Q03468 1493 aa7.54□□□□□ -1.2
SCN3A-210ENST00000640652 KIF14Q15058 1648 aa7.54□□□□□ -1.2
SCN3A-210ENST00000640652 SNAPC4Q5SXM2 1469 aa7.53□□□□□ -1.2
SCN3A-210ENST00000640652 MYO5CQ9NQX4 1742 aa7.53□□□□□ -1.2
SCN3A-210ENST00000640652 AKNAQ7Z591 1439 aa7.53□□□□□ -1.2
SCN3A-210ENST00000640652 ADAMTS12P58397 1594 aa7.53□□□□□ -1.2
SCN3A-210ENST00000640652 MIA2Q96PC5 1412 aa7.53□□□□□ -1.2
SCN3A-210ENST00000640652 GRIN2BQ13224 1484 aa7.53□□□□□ -1.2
SCN3A-210ENST00000640652 SLC4A1APQ9BWU0 796 aaKnown RBP7.53□□□□□ -1.2
SCN3A-210ENST00000640652 EPRSP07814 1512 aaKnown RBP7.52□□□□□ -1.2
SCN3A-210ENST00000640652 HIRIP3Q9BW71 556 aaPredicted RBP7.51□□□□□ -1.21
SCN3A-210ENST00000640652 ROCK2O75116 1388 aaKnown RBP7.51□□□□□ -1.21
SCN3A-210ENST00000640652 CARMIL2Q6F5E8 1435 aa7.51□□□□□ -1.21
SCN3A-210ENST00000640652 TDRD9Q8NDG6 1382 aaKnown RBP7.5□□□□□ -1.21
SCN3A-210ENST00000640652 FAM9BQ8IZU0 186 aa7.5□□□□□ -1.21
SCN3A-210ENST00000640652 MRC2Q9UBG0 1479 aa7.5□□□□□ -1.21
SCN3A-210ENST00000640652 WDR62O43379 1518 aa7.5□□□□□ -1.21
SCN3A-210ENST00000640652 ARID3CA6NKF2 412 aa7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms