RNA–Protein interactions for RNA: ENST00000638473.1

SCN3A-208, Transcript of sodium voltage-gated channel alpha subunit 3, humanhuman

TSL 5

Gene SCN3A, Length 8,724 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3A-208ENST00000638473 FHAD1B1AJZ9 1412 aa6.12□□□□□ -1.43
SCN3A-208ENST00000638473 ZNF316A6NFI3 1004 aaPredicted RBP6.11□□□□□ -1.43
SCN3A-208ENST00000638473 ANP32CO43423 234 aa6.11□□□□□ -1.43
SCN3A-208ENST00000638473 ERICH6Q7L0X2 663 aa6.11□□□□□ -1.43
SCN3A-208ENST00000638473 RAPGEF2Q9Y4G8 1499 aa6.11□□□□□ -1.43
SCN3A-208ENST00000638473 FGD5Q6ZNL6 1462 aa6.1□□□□□ -1.43
SCN3A-208ENST00000638473 HMGXB3Q12766 1538 aa6.1□□□□□ -1.43
SCN3A-208ENST00000638473 CFDP1Q9UEE9 299 aaPredicted RBP6.1□□□□□ -1.43
SCN3A-208ENST00000638473 CARMIL2Q6F5E8 1435 aa6.1□□□□□ -1.43
SCN3A-208ENST00000638473 RUSC2Q8N2Y8 1516 aa6.1□□□□□ -1.43
SCN3A-208ENST00000638473 NESP48681 1621 aa6.08□□□□□ -1.44
SCN3A-208ENST00000638473 RAD54L2Q9Y4B4 1467 aa6.08□□□□□ -1.44
SCN3A-208ENST00000638473 KDM2AQ9Y2K7 1162 aa6.08□□□□□ -1.44
SCN3A-208ENST00000638473 CCNB3Q8WWL7 1395 aa6.07□□□□□ -1.44
SCN3A-208ENST00000638473 MYT1Q01538 1121 aa6.07□□□□□ -1.44
SCN3A-208ENST00000638473 PRDM2Q13029 1718 aa6.07□□□□□ -1.44
SCN3A-208ENST00000638473 ARID4BQ4LE39 1312 aaPredicted RBP6.06□□□□□ -1.44
SCN3A-208ENST00000638473 GAPVD1Q14C86 1478 aa6.06□□□□□ -1.44
SCN3A-208ENST00000638473 SENP3Q9H4L4 574 aaPredicted RBP6.06□□□□□ -1.44
SCN3A-208ENST00000638473 ARHGAP35Q9NRY4 1499 aa6.06□□□□□ -1.44
SCN3A-208ENST00000638473 SYNJ1O43426 1573 aa6.06□□□□□ -1.44
SCN3A-208ENST00000638473 VPS8Q8N3P4 1428 aa6.05□□□□□ -1.44
SCN3A-208ENST00000638473 MRC2Q9UBG0 1479 aa6.05□□□□□ -1.44
SCN3A-208ENST00000638473 FHOD3Q2V2M9 1422 aa6.05□□□□□ -1.44
SCN3A-208ENST00000638473 TRHP20396 242 aaPredicted RBP6.05□□□□□ -1.44
SCN3A-208ENST00000638473 FMN1Q68DA7 1419 aa6.04□□□□□ -1.44
SCN3A-208ENST00000638473 CFTRP13569 1480 aa6.04□□□□□ -1.44
SCN3A-208ENST00000638473 TOP2BQ02880 1626 aa6.03□□□□□ -1.44
SCN3A-208ENST00000638473 SLC24A1O60721 1099 aa6.03□□□□□ -1.44
SCN3A-208ENST00000638473 AQRO60306 1485 aaKnown RBP eCLIP6.03□□□□□ -1.44
SCN3A-208ENST00000638473 KANK4Q5T7N3 995 aaPredicted RBP6.02□□□□□ -1.45
SCN3A-208ENST00000638473 CUX1P39880 1505 aa6.02□□□□□ -1.45
SCN3A-208ENST00000638473 LAMC3Q9Y6N6 1575 aa6.02□□□□□ -1.45
SCN3A-208ENST00000638473 JPH4Q96JJ6 628 aa6.01□□□□□ -1.45
SCN3A-208ENST00000638473 RGL3Q3MIN7 710 aa6.01□□□□□ -1.45
SCN3A-208ENST00000638473 DNMBPQ6XZF7 1577 aa6.01□□□□□ -1.45
SCN3A-208ENST00000638473 TOPBP1Q92547 1522 aa6□□□□□ -1.45
SCN3A-208ENST00000638473 PPP1R15AO75807 674 aaPredicted RBP6□□□□□ -1.45
SCN3A-208ENST00000638473 NEFMP07197 916 aa6□□□□□ -1.45
SCN3A-208ENST00000638473 DDX10Q13206 875 aaKnown RBP6□□□□□ -1.45
SCN3A-208ENST00000638473 HIRIP3Q9BW71 556 aaPredicted RBP6□□□□□ -1.45
SCN3A-208ENST00000638473 ACIN1Q9UKV3 1341 aaKnown RBP5.99□□□□□ -1.45
SCN3A-208ENST00000638473 KIF21BO75037 1637 aa5.99□□□□□ -1.45
SCN3A-208ENST00000638473 IGF1RP08069 1367 aa5.99□□□□□ -1.45
SCN3A-208ENST00000638473 IFT140Q96RY7 1462 aa5.98□□□□□ -1.45
SCN3A-208ENST00000638473 PEG3Q9GZU2 1588 aa5.98□□□□□ -1.45
SCN3A-208ENST00000638473 CCDC18Q5T9S5 1454 aa5.98□□□□□ -1.45
SCN3A-208ENST00000638473 KANK1Q14678 1352 aa5.98□□□□□ -1.45
SCN3A-208ENST00000638473 GRIN2BQ13224 1484 aa5.98□□□□□ -1.45
SCN3A-208ENST00000638473 MLECQ14165 292 aa5.97□□□□□ -1.45
SCN3A-208ENST00000638473 SETD5Q9C0A6 1442 aa5.97□□□□□ -1.45
SCN3A-208ENST00000638473 OSCARQ8IYS5 282 aa5.97□□□□□ -1.45
SCN3A-208ENST00000638473 CANXP27824 592 aaKnown RBP5.96□□□□□ -1.45
SCN3A-208ENST00000638473 DNAJC5BQ9UF47 199 aa5.96□□□□□ -1.45
SCN3A-208ENST00000638473 HNRNPMP52272 730 aaKnown RBP eCLIP5.96□□□□□ -1.46
SCN3A-208ENST00000638473 DAXXQ9UER7 740 aaPredicted RBP5.96□□□□□ -1.46
SCN3A-208ENST00000638473 SNAPC4Q5SXM2 1469 aa5.96□□□□□ -1.46
SCN3A-208ENST00000638473 SIN3AQ96ST3 1273 aa5.96□□□□□ -1.46
SCN3A-208ENST00000638473 POLA1P09884 1462 aaPredicted RBP5.96□□□□□ -1.46
SCN3A-208ENST00000638473 EIF4G2P78344 907 aaKnown RBP eCLIP5.95□□□□□ -1.46
SCN3A-208ENST00000638473 SCAF1Q9H7N4 1312 aaKnown RBP5.95□□□□□ -1.46
SCN3A-208ENST00000638473 PTPRGP23470 1445 aa5.95□□□□□ -1.46
SCN3A-208ENST00000638473 CLSPNQ9HAW4 1339 aa5.95□□□□□ -1.46
SCN3A-208ENST00000638473 FAM9BQ8IZU0 186 aa5.95□□□□□ -1.46
SCN3A-208ENST00000638473 ERICH3Q5RHP9 1530 aa5.95□□□□□ -1.46
SCN3A-208ENST00000638473 EFCAB2Q5VUJ9 269 aa5.94□□□□□ -1.46
SCN3A-208ENST00000638473 CUL7Q14999 1698 aa5.93□□□□□ -1.46
SCN3A-208ENST00000638473 BIVM-ERCC5R4GMW8 1640 aa5.93□□□□□ -1.46
SCN3A-208ENST00000638473 CYB5RLQ6IPT4 315 aa5.93□□□□□ -1.46
SCN3A-208ENST00000638473 C14orf37Q86TY3 774 aa5.93□□□□□ -1.46
SCN3A-208ENST00000638473 GGT6Q6P531 493 aa5.93□□□□□ -1.46
SCN3A-208ENST00000638473 ZBTB7CA1YPR0 619 aa5.93□□□□□ -1.46
SCN3A-208ENST00000638473 CARD11Q9BXL7 1154 aa5.93□□□□□ -1.46
SCN3A-208ENST00000638473 PLEKHG5O94827 1062 aa5.93□□□□□ -1.46
SCN3A-208ENST00000638473 FOXD1Q16676 465 aa5.93□□□□□ -1.46
SCN3A-208ENST00000638473 TMC1Q8TDI8 760 aa5.93□□□□□ -1.46
SCN3A-208ENST00000638473 KIF21AQ7Z4S6 1674 aa5.93□□□□□ -1.46
SCN3A-208ENST00000638473 ANKRD30AQ9BXX3 1397 aa5.92□□□□□ -1.46
SCN3A-208ENST00000638473 SALL2Q9Y467 1007 aaPredicted RBP5.92□□□□□ -1.46
SCN3A-208ENST00000638473 RAB3GAP2Q9H2M9 1393 aa5.91□□□□□ -1.46
SCN3A-208ENST00000638473 BCL11AQ9H165 835 aa5.91□□□□□ -1.46
SCN3A-208ENST00000638473 WDR43Q15061 677 aaKnown RBP eCLIP5.91□□□□□ -1.46
SCN3A-208ENST00000638473 DCAF11Q8TEB1 546 aa5.91□□□□□ -1.46
SCN3A-208ENST00000638473 GTF3C3Q9Y5Q9 886 aa5.91□□□□□ -1.46
SCN3A-208ENST00000638473 ZBTB47Q9UFB7 747 aaPredicted RBP5.9□□□□□ -1.46
SCN3A-208ENST00000638473 PKD2Q13563 968 aa5.9□□□□□ -1.46
SCN3A-208ENST00000638473 HNRNPUQ00839 825 aaKnown RBP eCLIP5.9□□□□□ -1.47
SCN3A-208ENST00000638473 PRG4Q92954 1404 aaPredicted RBP5.9□□□□□ -1.47
SCN3A-208ENST00000638473 URB2Q14146 1524 aaKnown RBP5.9□□□□□ -1.47
SCN3A-208ENST00000638473 MPHOSPH9Q99550 1183 aa5.89□□□□□ -1.47
SCN3A-208ENST00000638473 HECW1Q76N89 1606 aa5.89□□□□□ -1.47
SCN3A-208ENST00000638473 SPAG9O60271 1321 aaKnown RBP5.89□□□□□ -1.47
SCN3A-208ENST00000638473 POGKQ9P215 609 aa5.89□□□□□ -1.47
SCN3A-208ENST00000638473 EFCAB5A4FU69 1503 aa5.89□□□□□ -1.47
SCN3A-208ENST00000638473 NUP155O75694 1391 aa5.89□□□□□ -1.47
SCN3A-208ENST00000638473 ABCA10Q8WWZ4 1543 aa5.89□□□□□ -1.47
SCN3A-208ENST00000638473 ARAP1Q96P48 1450 aa5.88□□□□□ -1.47
SCN3A-208ENST00000638473 KIF3BO15066 747 aa5.88□□□□□ -1.47
SCN3A-208ENST00000638473 MRS2Q9HD23 443 aa5.88□□□□□ -1.47
SCN3A-208ENST00000638473 FYCO1Q9BQS8 1478 aa5.88□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms