RNA–Protein interactions for RNA: ENST00000638473.1

SCN3A-208, Transcript of sodium voltage-gated channel alpha subunit 3, humanhuman

TSL 5

Gene SCN3A, Length 8,724 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3A-208ENST00000638473 NISCHQ9Y2I1 1504 aa8.28□□□□□ -1.08
SCN3A-208ENST00000638473 DCAF8L2P0C7V8 631 aa7.99□□□□□ -1.13
SCN3A-208ENST00000638473 SHROOM4Q9ULL8 1493 aa7.56□□□□□ -1.2
SCN3A-208ENST00000638473 SUPT5HO00267 1087 aaKnown RBP7.46□□□□□ -1.21
SCN3A-208ENST00000638473 EHMT2Q96KQ7 1210 aa7.16□□□□□ -1.26
SCN3A-208ENST00000638473 ABCC9O60706 1549 aa7.14□□□□□ -1.27
SCN3A-208ENST00000638473 CCDC180Q9P1Z9 1646 aa7.06□□□□□ -1.28
SCN3A-208ENST00000638473 FAM9AQ8IZU1 332 aaPredicted RBP7.01□□□□□ -1.29
SCN3A-208ENST00000638473 PABPN1Q86U42 306 aaKnown RBP eCLIP6.95□□□□□ -1.3
SCN3A-208ENST00000638473 TRIM41Q8WV44 630 aa6.95□□□□□ -1.3
SCN3A-208ENST00000638473 SCRIBQ14160 1630 aa6.91□□□□□ -1.3
SCN3A-208ENST00000638473 RANGAP1P46060 587 aaPredicted RBP6.91□□□□□ -1.3
SCN3A-208ENST00000638473 APLP2Q06481 763 aa6.91□□□□□ -1.3
SCN3A-208ENST00000638473 ZCCHC6Q5VYS8 1495 aaKnown RBP6.87□□□□□ -1.31
SCN3A-208ENST00000638473 TTBK1Q5TCY1 1321 aaPredicted RBP6.87□□□□□ -1.31
SCN3A-208ENST00000638473 ATP1B4Q9UN42 357 aaPredicted RBP6.83□□□□□ -1.32
SCN3A-208ENST00000638473 UBTFP17480 764 aaKnown RBP6.82□□□□□ -1.32
SCN3A-208ENST00000638473 RB1CC1Q8TDY2 1594 aa6.8□□□□□ -1.32
SCN3A-208ENST00000638473 NACADO15069 1562 aa6.73□□□□□ -1.33
SCN3A-208ENST00000638473 PCGF6Q9BYE7 350 aa6.72□□□□□ -1.33
SCN3A-208ENST00000638473 CHIC1Q5VXU3 224 aa6.69□□□□□ -1.34
SCN3A-208ENST00000638473 PPARGC1BQ86YN6 1023 aaKnown RBP6.68□□□□□ -1.34
SCN3A-208ENST00000638473 LOC105371045A0A1W2PR82 267 aa6.66□□□□□ -1.34
SCN3A-208ENST00000638473 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP6.62□□□□□ -1.35
SCN3A-208ENST00000638473 HNRNPUL2Q1KMD3 747 aaKnown RBP6.62□□□□□ -1.35
SCN3A-208ENST00000638473 CCER1Q8TC90 406 aaPredicted RBP6.61□□□□□ -1.35
SCN3A-208ENST00000638473 DCAF1Q9Y4B6 1507 aa6.6□□□□□ -1.35
SCN3A-208ENST00000638473 MYT1LQ9UL68 1186 aa6.56□□□□□ -1.36
SCN3A-208ENST00000638473 ITGAEP38570 1179 aa6.55□□□□□ -1.36
SCN3A-208ENST00000638473 FBLN2P98095 1184 aa6.55□□□□□ -1.36
SCN3A-208ENST00000638473 TRIM26Q12899 539 aaPredicted RBP6.54□□□□□ -1.36
SCN3A-208ENST00000638473 ZEB1P37275 1124 aaPredicted RBP6.53□□□□□ -1.36
SCN3A-208ENST00000638473 BAZ1BQ9UIG0 1483 aaKnown RBP6.51□□□□□ -1.37
SCN3A-208ENST00000638473 RSF1Q96T23 1441 aaPredicted RBP6.51□□□□□ -1.37
SCN3A-208ENST00000638473 BAZ1AQ9NRL2 1556 aaPredicted RBP6.49□□□□□ -1.37
SCN3A-208ENST00000638473 CECR2Q9BXF3 1484 aa6.46□□□□□ -1.38
SCN3A-208ENST00000638473 P3H3Q8IVL6 736 aa6.46□□□□□ -1.38
SCN3A-208ENST00000638473 FAM50AQ14320 339 aaKnown RBP6.46□□□□□ -1.38
SCN3A-208ENST00000638473 CSRNP3Q8WYN3 585 aa6.44□□□□□ -1.38
SCN3A-208ENST00000638473 WIZO95785 1651 aa6.43□□□□□ -1.38
SCN3A-208ENST00000638473 MYO15BQ96JP2 1530 aa6.43□□□□□ -1.38
SCN3A-208ENST00000638473 MROH2BQ7Z745 1585 aa6.42□□□□□ -1.38
SCN3A-208ENST00000638473 ARID3CA6NKF2 412 aa6.42□□□□□ -1.38
SCN3A-208ENST00000638473 ERCC6Q03468 1493 aa6.4□□□□□ -1.38
SCN3A-208ENST00000638473 SMARCA2P51531 1590 aa6.4□□□□□ -1.38
SCN3A-208ENST00000638473 TRIM52Q96A61 297 aa6.37□□□□□ -1.39
SCN3A-208ENST00000638473 SMARCA4P51532 1647 aa6.37□□□□□ -1.39
SCN3A-208ENST00000638473 POLR3GLQ9BT43 218 aa6.36□□□□□ -1.39
SCN3A-208ENST00000638473 CCDC88BA6NC98 1476 aa6.36□□□□□ -1.39
SCN3A-208ENST00000638473 PELP1Q8IZL8 1130 aaKnown RBP6.36□□□□□ -1.39
SCN3A-208ENST00000638473 TOP2AP11388 1531 aaKnown RBP6.35□□□□□ -1.39
SCN3A-208ENST00000638473 WRNQ14191 1432 aaPredicted RBP eCLIP6.35□□□□□ -1.39
SCN3A-208ENST00000638473 CHMP7Q8WUX9 453 aaPredicted RBP6.34□□□□□ -1.39
SCN3A-208ENST00000638473 YTHDC1Q96MU7 727 aaKnown RBP6.33□□□□□ -1.4
SCN3A-208ENST00000638473 ZNF777Q9ULD5 760 aaPredicted RBP6.32□□□□□ -1.4
SCN3A-208ENST00000638473 NEUROD1Q13562 356 aa6.32□□□□□ -1.4
SCN3A-208ENST00000638473 ABCC8Q09428 1581 aa6.32□□□□□ -1.4
SCN3A-208ENST00000638473 HRCP23327 699 aa6.32□□□□□ -1.4
SCN3A-208ENST00000638473 CENPBP07199 599 aaPredicted RBP6.31□□□□□ -1.4
SCN3A-208ENST00000638473 GOLGA3Q08378 1498 aa6.3□□□□□ -1.4
SCN3A-208ENST00000638473 CDK11AQ9UQ88 783 aaPredicted RBP6.3□□□□□ -1.4
SCN3A-208ENST00000638473 KIF27Q86VH2 1401 aa6.29□□□□□ -1.4
SCN3A-208ENST00000638473 CNGB1Q14028 1251 aaPredicted RBP6.29□□□□□ -1.4
SCN3A-208ENST00000638473 SLC4A1APQ9BWU0 796 aaKnown RBP6.28□□□□□ -1.4
SCN3A-208ENST00000638473 ATAD2BQ9ULI0 1458 aa6.28□□□□□ -1.4
SCN3A-208ENST00000638473 NPM1P06748 294 aaKnown RBP eCLIP6.28□□□□□ -1.4
SCN3A-208ENST00000638473 EEA1Q15075 1411 aa6.27□□□□□ -1.4
SCN3A-208ENST00000638473 EIF4G1Q04637 1599 aaKnown RBP6.27□□□□□ -1.41
SCN3A-208ENST00000638473 UNC13AQ9UPW8 1703 aa6.26□□□□□ -1.41
SCN3A-208ENST00000638473 PDS5BQ9NTI5 1447 aa6.26□□□□□ -1.41
SCN3A-208ENST00000638473 CLIP1P30622 1438 aa6.26□□□□□ -1.41
SCN3A-208ENST00000638473 CEP164Q9UPV0 1460 aa6.25□□□□□ -1.41
SCN3A-208ENST00000638473 CUX2O14529 1486 aa6.25□□□□□ -1.41
SCN3A-208ENST00000638473 ZNF326Q5BKZ1 582 aaKnown RBP6.24□□□□□ -1.41
SCN3A-208ENST00000638473 CEP162Q5TB80 1403 aa6.24□□□□□ -1.41
SCN3A-208ENST00000638473 SOGA1O94964 1423 aa6.23□□□□□ -1.41
SCN3A-208ENST00000638473 MTUS2Q5JR59 1369 aa6.22□□□□□ -1.41
SCN3A-208ENST00000638473 CC2D2AQ9P2K1 1620 aa6.21□□□□□ -1.42
SCN3A-208ENST00000638473 BCANQ96GW7 911 aa6.21□□□□□ -1.42
SCN3A-208ENST00000638473 NEFLP07196 543 aa6.2□□□□□ -1.42
SCN3A-208ENST00000638473 CADPSQ9ULU8 1353 aa6.2□□□□□ -1.42
SCN3A-208ENST00000638473 CHIC2Q9UKJ5 165 aa6.2□□□□□ -1.42
SCN3A-208ENST00000638473 PLPPR3Q6T4P5 718 aa6.2□□□□□ -1.42
SCN3A-208ENST00000638473 CARMIL1Q5VZK9 1371 aa6.2□□□□□ -1.42
SCN3A-208ENST00000638473 TNIKQ9UKE5 1360 aa6.19□□□□□ -1.42
SCN3A-208ENST00000638473 KCNH8Q96L42 1107 aa6.19□□□□□ -1.42
SCN3A-208ENST00000638473 FANCD2Q9BXW9 1451 aa6.19□□□□□ -1.42
SCN3A-208ENST00000638473 ESF1Q9H501 851 aaKnown RBP6.18□□□□□ -1.42
SCN3A-208ENST00000638473 DIEXFQ68CQ4 756 aaKnown RBP6.18□□□□□ -1.42
SCN3A-208ENST00000638473 GRWD1Q9BQ67 446 aaKnown RBP eCLIP6.17□□□□□ -1.42
SCN3A-208ENST00000638473 PLEKHD1A6NEE1 506 aa6.16□□□□□ -1.42
SCN3A-208ENST00000638473 CHGAP10645 457 aaKnown RBP6.15□□□□□ -1.42
SCN3A-208ENST00000638473 TDRD9Q8NDG6 1382 aaKnown RBP6.15□□□□□ -1.42
SCN3A-208ENST00000638473 BICRAQ9NZM4 1560 aa6.15□□□□□ -1.42
SCN3A-208ENST00000638473 STAG3Q9UJ98 1225 aa6.14□□□□□ -1.43
SCN3A-208ENST00000638473 TSPY4P0CV99 314 aa6.14□□□□□ -1.43
SCN3A-208ENST00000638473 TSPY10P0CW01 314 aa6.14□□□□□ -1.43
SCN3A-208ENST00000638473 NCAPD3P42695 1498 aa6.13□□□□□ -1.43
SCN3A-208ENST00000638473 RRP7BPQ9NSQ0 103 aa6.13□□□□□ -1.43
SCN3A-208ENST00000638473 TONSLQ96HA7 1378 aa6.12□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms