RNA–Protein interactions for RNA: ENST00000628904.2

PKP4-217, Transcript of plakophilin 4, humanhuman

TSL 5 BASIC

Gene PKP4, Length 3,856 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKP4-217ENST00000628904 FOXD1Q16676 465 aa10.8□□□□□ -0.68
PKP4-217ENST00000628904 CUX1P39880 1505 aa10.79□□□□□ -0.68
PKP4-217ENST00000628904 BCANQ96GW7 911 aa10.79□□□□□ -0.68
PKP4-217ENST00000628904 PELP1Q8IZL8 1130 aaKnown RBP10.78□□□□□ -0.68
PKP4-217ENST00000628904 CC2D2AQ9P2K1 1620 aa10.78□□□□□ -0.68
PKP4-217ENST00000628904 ACIN1Q9UKV3 1341 aaKnown RBP10.77□□□□□ -0.69
PKP4-217ENST00000628904 ARAP1Q96P48 1450 aa10.76□□□□□ -0.69
PKP4-217ENST00000628904 CFTRP13569 1480 aa10.76□□□□□ -0.69
PKP4-217ENST00000628904 SENP3Q9H4L4 574 aaPredicted RBP10.76□□□□□ -0.69
PKP4-217ENST00000628904 CCNB3Q8WWL7 1395 aa10.75□□□□□ -0.69
PKP4-217ENST00000628904 KCNH8Q96L42 1107 aa10.74□□□□□ -0.69
PKP4-217ENST00000628904 KIF21BO75037 1637 aa10.74□□□□□ -0.69
PKP4-217ENST00000628904 AQRO60306 1485 aaKnown RBP eCLIP10.72□□□□□ -0.691e-9■■■■□ 21.4
PKP4-217ENST00000628904 ERCC6Q03468 1493 aa10.72□□□□□ -0.69
PKP4-217ENST00000628904 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.7□□□□□ -0.76e-10■■□□□ 12.1
PKP4-217ENST00000628904 RAB3GAP2Q9H2M9 1393 aa10.69□□□□□ -0.7
PKP4-217ENST00000628904 PDS5BQ9NTI5 1447 aa10.67□□□□□ -0.7
PKP4-217ENST00000628904 KDM2AQ9Y2K7 1162 aa10.67□□□□□ -0.7
PKP4-217ENST00000628904 ARHGAP35Q9NRY4 1499 aa10.67□□□□□ -0.7
PKP4-217ENST00000628904 PRXQ9BXM0 1461 aa10.67□□□□□ -0.7
PKP4-217ENST00000628904 TOP2BQ02880 1626 aa10.66□□□□□ -0.7
PKP4-217ENST00000628904 PHLDB1Q86UU1 1377 aa10.66□□□□□ -0.7
PKP4-217ENST00000628904 TONSLQ96HA7 1378 aa10.66□□□□□ -0.7
PKP4-217ENST00000628904 PEG3Q9GZU2 1588 aa10.64□□□□□ -0.71
PKP4-217ENST00000628904 ZNF644Q9H582 1327 aaPredicted RBP10.64□□□□□ -0.71
PKP4-217ENST00000628904 DHX57Q6P158 1386 aaKnown RBP10.64□□□□□ -0.71
PKP4-217ENST00000628904 POLA1P09884 1462 aaPredicted RBP10.63□□□□□ -0.71
PKP4-217ENST00000628904 SLC4A1APQ9BWU0 796 aaKnown RBP10.62□□□□□ -0.71
PKP4-217ENST00000628904 CDK11AQ9UQ88 783 aaPredicted RBP10.62□□□□□ -0.71
PKP4-217ENST00000628904 CFDP1Q9UEE9 299 aaPredicted RBP10.62□□□□□ -0.71
PKP4-217ENST00000628904 HMGXB3Q12766 1538 aa10.61□□□□□ -0.71
PKP4-217ENST00000628904 RGL3Q3MIN7 710 aa10.6□□□□□ -0.71
PKP4-217ENST00000628904 AEBP2Q6ZN18 517 aaPredicted RBP10.6□□□□□ -0.71
PKP4-217ENST00000628904 TOPBP1Q92547 1522 aa10.6□□□□□ -0.71
PKP4-217ENST00000628904 GAPVD1Q14C86 1478 aa10.59□□□□□ -0.71
PKP4-217ENST00000628904 ANP32CO43423 234 aa10.59□□□□□ -0.71
PKP4-217ENST00000628904 FHAD1B1AJZ9 1412 aa10.59□□□□□ -0.71
PKP4-217ENST00000628904 IRX6P78412 446 aaPredicted RBP10.58□□□□□ -0.72
PKP4-217ENST00000628904 SALL2Q9Y467 1007 aaPredicted RBP10.57□□□□□ -0.72
PKP4-217ENST00000628904 PLEKHD1A6NEE1 506 aa10.57□□□□□ -0.72
PKP4-217ENST00000628904 SETD5Q9C0A6 1442 aa10.56□□□□□ -0.72
PKP4-217ENST00000628904 FAM9BQ8IZU0 186 aa10.56□□□□□ -0.72
PKP4-217ENST00000628904 JPH4Q96JJ6 628 aa10.56□□□□□ -0.72
PKP4-217ENST00000628904 NEFLP07196 543 aa10.53□□□□□ -0.72
PKP4-217ENST00000628904 TSPY4P0CV99 314 aa10.53□□□□□ -0.72
PKP4-217ENST00000628904 TSPY10P0CW01 314 aa10.53□□□□□ -0.72
PKP4-217ENST00000628904 HNRNPMP52272 730 aaKnown RBP eCLIP10.53□□□□□ -0.723e-6■■■□□ 19.2
PKP4-217ENST00000628904 URB2Q14146 1524 aaKnown RBP10.53□□□□□ -0.72
PKP4-217ENST00000628904 HNRNPUQ00839 825 aaKnown RBP eCLIP10.51□□□□□ -0.73
PKP4-217ENST00000628904 PLPPR3Q6T4P5 718 aa10.51□□□□□ -0.73
PKP4-217ENST00000628904 MYT1Q01538 1121 aa10.51□□□□□ -0.73
PKP4-217ENST00000628904 ZNF608Q9ULD9 1512 aaPredicted RBP10.5□□□□□ -0.73
PKP4-217ENST00000628904 LRRC9Q6ZRR7 1453 aa10.5□□□□□ -0.73
PKP4-217ENST00000628904 CHGAP10645 457 aaKnown RBP10.5□□□□□ -0.73
PKP4-217ENST00000628904 FMN1Q68DA7 1419 aa10.5□□□□□ -0.73
PKP4-217ENST00000628904 FKBP8Q14318 412 aa10.49□□□□□ -0.73
PKP4-217ENST00000628904 MPHOSPH9Q99550 1183 aa10.49□□□□□ -0.73
PKP4-217ENST00000628904 ERICH3Q5RHP9 1530 aa10.48□□□□□ -0.73
PKP4-217ENST00000628904 PPP1R15AO75807 674 aaPredicted RBP10.47□□□□□ -0.73
PKP4-217ENST00000628904 L3MBTL2Q969R5 705 aa10.47□□□□□ -0.73
PKP4-217ENST00000628904 PKD2Q13563 968 aa10.46□□□□□ -0.74
PKP4-217ENST00000628904 HSPA5P11021 654 aaKnown RBP10.44□□□□□ -0.74
PKP4-217ENST00000628904 EIF4G2P78344 907 aaKnown RBP eCLIP10.44□□□□□ -0.74
PKP4-217ENST00000628904 BIVM-ERCC5R4GMW8 1640 aa10.44□□□□□ -0.74
PKP4-217ENST00000628904 DCAF11Q8TEB1 546 aa10.42□□□□□ -0.74
PKP4-217ENST00000628904 DNMBPQ6XZF7 1577 aa10.42□□□□□ -0.74
PKP4-217ENST00000628904 FGD6Q6ZV73 1430 aa10.42□□□□□ -0.74
PKP4-217ENST00000628904 MRS2Q9HD23 443 aa10.41□□□□□ -0.74
PKP4-217ENST00000628904 RRBP1Q9P2E9 1410 aaKnown RBP10.41□□□□□ -0.74
PKP4-217ENST00000628904 CDK13Q14004 1512 aaKnown RBP10.41□□□□□ -0.74
PKP4-217ENST00000628904 ABCA10Q8WWZ4 1543 aa10.41□□□□□ -0.74
PKP4-217ENST00000628904 NCOA2Q15596 1464 aa10.4□□□□□ -0.74
PKP4-217ENST00000628904 CLSPNQ9HAW4 1339 aa10.4□□□□□ -0.74
PKP4-217ENST00000628904 PCF11O94913 1555 aaKnown RBP10.4□□□□□ -0.75
PKP4-217ENST00000628904 PRG4Q92954 1404 aaPredicted RBP10.39□□□□□ -0.75
PKP4-217ENST00000628904 SNAPC4Q5SXM2 1469 aa10.38□□□□□ -0.75
PKP4-217ENST00000628904 CASKIN1Q8WXD9 1431 aa10.38□□□□□ -0.75
PKP4-217ENST00000628904 TIAM1Q13009 1591 aa10.37□□□□□ -0.75
PKP4-217ENST00000628904 CARD11Q9BXL7 1154 aa10.37□□□□□ -0.75
PKP4-217ENST00000628904 CCDC18Q5T9S5 1454 aa10.37□□□□□ -0.75
PKP4-217ENST00000628904 NUP155O75694 1391 aa10.37□□□□□ -0.75
PKP4-217ENST00000628904 PTPRKQ15262 1439 aa10.37□□□□□ -0.75
PKP4-217ENST00000628904 PRDM2Q13029 1718 aa10.35□□□□□ -0.75
PKP4-217ENST00000628904 NPM1P06748 294 aaKnown RBP eCLIP10.35□□□□□ -0.75
PKP4-217ENST00000628904 SUPT16HQ9Y5B9 1047 aaKnown RBP10.35□□□□□ -0.75
PKP4-217ENST00000628904 MRC2Q9UBG0 1479 aa10.35□□□□□ -0.75
PKP4-217ENST00000628904 NUTM2DQ5VT03 806 aaPredicted RBP10.35□□□□□ -0.75
PKP4-217ENST00000628904 GRIN2BQ13224 1484 aa10.35□□□□□ -0.75
PKP4-217ENST00000628904 MYOM3Q5VTT5 1437 aa10.35□□□□□ -0.75
PKP4-217ENST00000628904 PLB1Q6P1J6 1458 aa10.34□□□□□ -0.75
PKP4-217ENST00000628904 CARMIL2Q6F5E8 1435 aa10.33□□□□□ -0.76
PKP4-217ENST00000628904 PTPRGP23470 1445 aa10.32□□□□□ -0.76
PKP4-217ENST00000628904 NBPF8Q3BBV2 869 aa10.32□□□□□ -0.76
PKP4-217ENST00000628904 GGT6Q6P531 493 aa10.31□□□□□ -0.76
PKP4-217ENST00000628904 CCDC184Q52MB2 194 aa10.31□□□□□ -0.76
PKP4-217ENST00000628904 CC2D1BQ5T0F9 858 aaKnown RBP10.31□□□□□ -0.76
PKP4-217ENST00000628904 TMC1Q8TDI8 760 aa10.31□□□□□ -0.76
PKP4-217ENST00000628904 LAMC3Q9Y6N6 1575 aa10.31□□□□□ -0.76
PKP4-217ENST00000628904 AFAP1Q8N556 730 aa10.31□□□□□ -0.76
PKP4-217ENST00000628904 WDR97A6NE52 1622 aa10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms