RNA–Protein interactions for RNA: ENST00000624720.1

USB1-216, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

Gene USB1, Length 2,895 nt, Biotype TEC, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-216ENST00000624720 CADPSQ9ULU8 1353 aa13.16□□□□□ -0.3
USB1-216ENST00000624720 NPM2Q86SE8 214 aaKnown RBP13.15□□□□□ -0.3
USB1-216ENST00000624720 ERCC6Q03468 1493 aa13.15□□□□□ -0.3
USB1-216ENST00000624720 RBM10P98175 930 aaKnown RBP13.14□□□□□ -0.31
USB1-216ENST00000624720 DHX37Q8IY37 1157 aaKnown RBP13.14□□□□□ -0.31
USB1-216ENST00000624720 CHMP4AQ9BY43 222 aa13.14□□□□□ -0.31
USB1-216ENST00000624720 PHF23Q9BUL5 403 aaPredicted RBP13.13□□□□□ -0.31
USB1-216ENST00000624720 PDS5BQ9NTI5 1447 aa13.13□□□□□ -0.31
USB1-216ENST00000624720 THOC2Q8NI27 1593 aaKnown RBP13.11□□□□□ -0.31
USB1-216ENST00000624720 CFTRP13569 1480 aa13.11□□□□□ -0.31
USB1-216ENST00000624720 PRDM2Q13029 1718 aa13.09□□□□□ -0.31
USB1-216ENST00000624720 BRD2P25440 801 aaKnown RBP13.08□□□□□ -0.32
USB1-216ENST00000624720 AMER1Q5JTC6 1135 aaPredicted RBP13.08□□□□□ -0.32
USB1-216ENST00000624720 KIF21AQ7Z4S6 1674 aa13.07□□□□□ -0.32
USB1-216ENST00000624720 CUX1P39880 1505 aa13.06□□□□□ -0.32
USB1-216ENST00000624720 HAP1P54257 671 aaPredicted RBP13.06□□□□□ -0.32
USB1-216ENST00000624720 VSIG10Q8N0Z9 540 aa13.05□□□□□ -0.32
USB1-216ENST00000624720 RSPH6AQ9H0K4 717 aa13.05□□□□□ -0.32
USB1-216ENST00000624720 C14orf37Q86TY3 774 aa13.04□□□□□ -0.32
USB1-216ENST00000624720 FANCD2Q9BXW9 1451 aa13.04□□□□□ -0.32
USB1-216ENST00000624720 DIEXFQ68CQ4 756 aaKnown RBP13.03□□□□□ -0.32
USB1-216ENST00000624720 P3H3Q8IVL6 736 aa13.03□□□□□ -0.32
USB1-216ENST00000624720 PAXIP1Q6ZW49 1069 aaPredicted RBP13.02□□□□□ -0.33
USB1-216ENST00000624720 CEP162Q5TB80 1403 aa13.01□□□□□ -0.33
USB1-216ENST00000624720 RAPGEF2Q9Y4G8 1499 aa13.01□□□□□ -0.33
USB1-216ENST00000624720 WDR62O43379 1518 aa13.01□□□□□ -0.33
USB1-216ENST00000624720 MRC2Q9UBG0 1479 aa13.01□□□□□ -0.33
USB1-216ENST00000624720 TRIM26Q12899 539 aaPredicted RBP13□□□□□ -0.33
USB1-216ENST00000624720 SUPT16HQ9Y5B9 1047 aaKnown RBP13□□□□□ -0.33
USB1-216ENST00000624720 RAD54L2Q9Y4B4 1467 aa13□□□□□ -0.33
USB1-216ENST00000624720 ATP1B4Q9UN42 357 aaPredicted RBP13□□□□□ -0.33
USB1-216ENST00000624720 SAMD1Q6SPF0 538 aaPredicted RBP12.99□□□□□ -0.33
USB1-216ENST00000624720 CEP164Q9UPV0 1460 aa12.98□□□□□ -0.33
USB1-216ENST00000624720 TAOK2Q9UL54 1235 aa12.97□□□□□ -0.33
USB1-216ENST00000624720 TDRD9Q8NDG6 1382 aaKnown RBP12.97□□□□□ -0.33
USB1-216ENST00000624720 FGD5Q6ZNL6 1462 aa12.96□□□□□ -0.33
USB1-216ENST00000624720 IL27Q8NEV9 243 aa12.96□□□□□ -0.34
USB1-216ENST00000624720 TOP2BQ02880 1626 aa12.95□□□□□ -0.34
USB1-216ENST00000624720 GOLGA3Q08378 1498 aa12.95□□□□□ -0.34
USB1-216ENST00000624720 RSPH4AQ5TD94 716 aa12.95□□□□□ -0.34
USB1-216ENST00000624720 YTHDC1Q96MU7 727 aaKnown RBP12.95□□□□□ -0.34
USB1-216ENST00000624720 KIF27Q86VH2 1401 aa12.93□□□□□ -0.34
USB1-216ENST00000624720 TNIKQ9UKE5 1360 aa12.92□□□□□ -0.34
USB1-216ENST00000624720 MSH5O43196 834 aa12.91□□□□□ -0.34
USB1-216ENST00000624720 RBM19Q9Y4C8 960 aaKnown RBP12.91□□□□□ -0.34
USB1-216ENST00000624720 EEA1Q15075 1411 aa12.91□□□□□ -0.34
USB1-216ENST00000624720 ZNF326Q5BKZ1 582 aaKnown RBP12.91□□□□□ -0.34
USB1-216ENST00000624720 NAP1L5Q96NT1 182 aaPredicted RBP12.91□□□□□ -0.34
USB1-216ENST00000624720 CLIP1P30622 1438 aa12.89□□□□□ -0.35
USB1-216ENST00000624720 FBLN2P98095 1184 aa12.87□□□□□ -0.35
USB1-216ENST00000624720 ARID3CA6NKF2 412 aa12.86□□□□□ -0.35
USB1-216ENST00000624720 IGF1RP08069 1367 aa12.86□□□□□ -0.35
USB1-216ENST00000624720 URB2Q14146 1524 aaKnown RBP12.85□□□□□ -0.35
USB1-216ENST00000624720 TOPBP1Q92547 1522 aa12.85□□□□□ -0.35
USB1-216ENST00000624720 POLA1P09884 1462 aaPredicted RBP12.85□□□□□ -0.35
USB1-216ENST00000624720 HNRNPUL2Q1KMD3 747 aaKnown RBP12.85□□□□□ -0.35
USB1-216ENST00000624720 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.84□□□□□ -0.35
USB1-216ENST00000624720 CARMIL1Q5VZK9 1371 aa12.84□□□□□ -0.35
USB1-216ENST00000624720 BIVM-ERCC5R4GMW8 1640 aa12.83□□□□□ -0.36
USB1-216ENST00000624720 ITGAEP38570 1179 aa12.8□□□□□ -0.36
USB1-216ENST00000624720 DNMBPQ6XZF7 1577 aa12.8□□□□□ -0.36
USB1-216ENST00000624720 AQRO60306 1485 aaKnown RBP eCLIP12.79□□□□□ -0.36
USB1-216ENST00000624720 TPRNQ4KMQ1 711 aa12.79□□□□□ -0.36
USB1-216ENST00000624720 NAP1L2Q9ULW6 460 aaPredicted RBP12.79□□□□□ -0.36
USB1-216ENST00000624720 CNKSR2Q8WXI2 1034 aa12.79□□□□□ -0.36
USB1-216ENST00000624720 PRXQ9BXM0 1461 aa12.77□□□□□ -0.37
USB1-216ENST00000624720 KANK4Q5T7N3 995 aaPredicted RBP12.76□□□□□ -0.37
USB1-216ENST00000624720 DNAJC5Q9H3Z4 198 aa12.76□□□□□ -0.37
USB1-216ENST00000624720 FBXO3Q9UK99 471 aa12.76□□□□□ -0.37
USB1-216ENST00000624720 IFT140Q96RY7 1462 aa12.75□□□□□ -0.37
USB1-216ENST00000624720 WDR97A6NE52 1622 aa12.75□□□□□ -0.37
USB1-216ENST00000624720 FANCIQ9NVI1 1328 aa12.73□□□□□ -0.37
USB1-216ENST00000624720 CDK11BP21127 795 aaKnown RBP12.72□□□□□ -0.37
USB1-216ENST00000624720 CDK11AQ9UQ88 783 aaPredicted RBP12.72□□□□□ -0.37
USB1-216ENST00000624720 KIF21BO75037 1637 aa12.72□□□□□ -0.37
USB1-216ENST00000624720 CCER1Q8TC90 406 aaPredicted RBP12.72□□□□□ -0.37
USB1-216ENST00000624720 IRX6P78412 446 aaPredicted RBP12.71□□□□□ -0.37
USB1-216ENST00000624720 ZNF608Q9ULD9 1512 aaPredicted RBP12.7□□□□□ -0.38
USB1-216ENST00000624720 ARAP1Q96P48 1450 aa12.69□□□□□ -0.38
USB1-216ENST00000624720 CHMP4BQ9H444 224 aaKnown RBP12.68□□□□□ -0.38
USB1-216ENST00000624720 GAPVD1Q14C86 1478 aa12.68□□□□□ -0.38
USB1-216ENST00000624720 BCCIPQ9P287 314 aaKnown RBP eCLIP12.68□□□□□ -0.38
USB1-216ENST00000624720 TARBP1Q13395 1621 aaKnown RBP12.68□□□□□ -0.38
USB1-216ENST00000624720 KCNA4P22459 653 aa12.67□□□□□ -0.38
USB1-216ENST00000624720 VPS8Q8N3P4 1428 aa12.67□□□□□ -0.38
USB1-216ENST00000624720 FHOD3Q2V2M9 1422 aa12.67□□□□□ -0.38
USB1-216ENST00000624720 ABCA10Q8WWZ4 1543 aa12.66□□□□□ -0.38
USB1-216ENST00000624720 HSP90B1P14625 803 aaKnown RBP12.66□□□□□ -0.38
USB1-216ENST00000624720 BBXQ8WY36 941 aaPredicted RBP12.64□□□□□ -0.39
USB1-216ENST00000624720 CHMP7Q8WUX9 453 aaPredicted RBP12.64□□□□□ -0.39
USB1-216ENST00000624720 ARHGAP35Q9NRY4 1499 aa12.64□□□□□ -0.39
USB1-216ENST00000624720 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.62□□□□□ -0.39
USB1-216ENST00000624720 IPO4Q8TEX9 1081 aaKnown RBP12.62□□□□□ -0.39
USB1-216ENST00000624720 EIF4G3O43432 1585 aaKnown RBP12.62□□□□□ -0.39
USB1-216ENST00000624720 ZFP91Q96JP5 570 aaPredicted RBP12.61□□□□□ -0.39
USB1-216ENST00000624720 ERICH3Q5RHP9 1530 aa12.6□□□□□ -0.39
USB1-216ENST00000624720 FAM50AQ14320 339 aaKnown RBP12.59□□□□□ -0.39
USB1-216ENST00000624720 NBR1Q14596 966 aa12.57□□□□□ -0.4
USB1-216ENST00000624720 BCANQ96GW7 911 aa12.57□□□□□ -0.4
USB1-216ENST00000624720 C11orf95C9JLR9 678 aaPredicted RBP12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms