RNA–Protein interactions for RNA: ENST00000624720.1

USB1-216, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

Gene USB1, Length 2,895 nt, Biotype TEC, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-216ENST00000624720 NISCHQ9Y2I1 1504 aa17.93■□□□□ 0.46
USB1-216ENST00000624720 PELP1Q8IZL8 1130 aaKnown RBP16.82■□□□□ 0.28
USB1-216ENST00000624720 MYT1Q01538 1121 aa16.69■□□□□ 0.26
USB1-216ENST00000624720 TTBK1Q5TCY1 1321 aaPredicted RBP16.17■□□□□ 0.18
USB1-216ENST00000624720 SLC24A1O60721 1099 aa16.03■□□□□ 0.16
USB1-216ENST00000624720 PRKCSHP14314 528 aaPredicted RBP15.92■□□□□ 0.14
USB1-216ENST00000624720 CCDC180Q9P1Z9 1646 aa15.77■□□□□ 0.11
USB1-216ENST00000624720 DCAF8L2P0C7V8 631 aa15.73■□□□□ 0.11
USB1-216ENST00000624720 ERICH6Q7L0X2 663 aa15.61■□□□□ 0.09
USB1-216ENST00000624720 APLP2Q06481 763 aa15.58■□□□□ 0.08
USB1-216ENST00000624720 SHROOM4Q9ULL8 1493 aa15.53■□□□□ 0.08
USB1-216ENST00000624720 BCL11AQ9H165 835 aa15.22■□□□□ 0.03
USB1-216ENST00000624720 ABCC9O60706 1549 aa15.18■□□□□ 0.02
USB1-216ENST00000624720 DAXXQ9UER7 740 aaPredicted RBP15.18■□□□□ 0.02
USB1-216ENST00000624720 ZCCHC6Q5VYS8 1495 aaKnown RBP15.02■□□□□ -0
USB1-216ENST00000624720 SUPT5HO00267 1087 aaKnown RBP15.02■□□□□ -0
USB1-216ENST00000624720 FAM9AQ8IZU1 332 aaPredicted RBP14.99□□□□□ -0.01
USB1-216ENST00000624720 HRCP23327 699 aa14.9□□□□□ -0.02
USB1-216ENST00000624720 SCAF1Q9H7N4 1312 aaKnown RBP14.89□□□□□ -0.03
USB1-216ENST00000624720 RB1CC1Q8TDY2 1594 aa14.79□□□□□ -0.04
USB1-216ENST00000624720 NACADO15069 1562 aa14.79□□□□□ -0.04
USB1-216ENST00000624720 MYO15BQ96JP2 1530 aa14.78□□□□□ -0.04
USB1-216ENST00000624720 EIF5BO60841 1220 aaKnown RBP14.74□□□□□ -0.05
USB1-216ENST00000624720 DCAF1Q9Y4B6 1507 aa14.64□□□□□ -0.07
USB1-216ENST00000624720 SCRIBQ14160 1630 aa14.59□□□□□ -0.07
USB1-216ENST00000624720 CENPBP07199 599 aaPredicted RBP14.56□□□□□ -0.08
USB1-216ENST00000624720 CHIC1Q5VXU3 224 aa14.56□□□□□ -0.08
USB1-216ENST00000624720 PABPN1Q86U42 306 aaKnown RBP eCLIP14.48□□□□□ -0.09
USB1-216ENST00000624720 UNC13AQ9UPW8 1703 aa14.42□□□□□ -0.1
USB1-216ENST00000624720 PLEKHG5O94827 1062 aa14.41□□□□□ -0.1
USB1-216ENST00000624720 PPARGC1BQ86YN6 1023 aaKnown RBP14.4□□□□□ -0.1
USB1-216ENST00000624720 AEBP2Q6ZN18 517 aaPredicted RBP14.32□□□□□ -0.12
USB1-216ENST00000624720 BICRAQ9NZM4 1560 aa14.29□□□□□ -0.12
USB1-216ENST00000624720 CECR2Q9BXF3 1484 aa14.22□□□□□ -0.13
USB1-216ENST00000624720 ANP32EQ9BTT0 268 aa14.2□□□□□ -0.14
USB1-216ENST00000624720 UBE2Q2Q8WVN8 375 aa14.19□□□□□ -0.14
USB1-216ENST00000624720 PODXL2Q9NZ53 605 aa14.14□□□□□ -0.15
USB1-216ENST00000624720 NCBP3Q53F19 620 aaKnown RBP14.13□□□□□ -0.15
USB1-216ENST00000624720 RSF1Q96T23 1441 aaPredicted RBP14.12□□□□□ -0.15
USB1-216ENST00000624720 EHMT2Q96KQ7 1210 aa14.11□□□□□ -0.15
USB1-216ENST00000624720 ACIN1Q9UKV3 1341 aaKnown RBP14.1□□□□□ -0.15
USB1-216ENST00000624720 ANO8Q9HCE9 1232 aaPredicted RBP14.07□□□□□ -0.16
USB1-216ENST00000624720 GTF3C3Q9Y5Q9 886 aa14.05□□□□□ -0.16
USB1-216ENST00000624720 CSRNP3Q8WYN3 585 aa14.05□□□□□ -0.16
USB1-216ENST00000624720 MROH2BQ7Z745 1585 aa14.03□□□□□ -0.16
USB1-216ENST00000624720 NEUROD1Q13562 356 aa13.94□□□□□ -0.18
USB1-216ENST00000624720 DNAJC5BQ9UF47 199 aa13.94□□□□□ -0.18
USB1-216ENST00000624720 PKNOX2Q96KN3 472 aa13.93□□□□□ -0.18
USB1-216ENST00000624720 WIZO95785 1651 aa13.91□□□□□ -0.18
USB1-216ENST00000624720 EIF4G1Q04637 1599 aaKnown RBP13.91□□□□□ -0.18
USB1-216ENST00000624720 RANGAP1P46060 587 aaPredicted RBP13.89□□□□□ -0.19
USB1-216ENST00000624720 LOC105371045A0A1W2PR82 267 aa13.89□□□□□ -0.19
USB1-216ENST00000624720 KLHL34Q8N239 644 aa13.88□□□□□ -0.19
USB1-216ENST00000624720 TRIM41Q8WV44 630 aa13.86□□□□□ -0.19
USB1-216ENST00000624720 ARXQ96QS3 562 aa13.86□□□□□ -0.19
USB1-216ENST00000624720 CC2D2AQ9P2K1 1620 aa13.85□□□□□ -0.19
USB1-216ENST00000624720 PCGF6Q9BYE7 350 aa13.79□□□□□ -0.2
USB1-216ENST00000624720 BAZ1AQ9NRL2 1556 aaPredicted RBP13.78□□□□□ -0.2
USB1-216ENST00000624720 PLPPR3Q6T4P5 718 aa13.77□□□□□ -0.2
USB1-216ENST00000624720 RTN4Q9NQC3 1192 aaKnown RBP13.73□□□□□ -0.21
USB1-216ENST00000624720 SMARCA4P51532 1647 aa13.72□□□□□ -0.21
USB1-216ENST00000624720 TIMELESSQ9UNS1 1208 aa13.71□□□□□ -0.22
USB1-216ENST00000624720 ZEB1P37275 1124 aaPredicted RBP13.67□□□□□ -0.22
USB1-216ENST00000624720 SALL2Q9Y467 1007 aaPredicted RBP13.67□□□□□ -0.22
USB1-216ENST00000624720 PDIA4P13667 645 aaKnown RBP13.66□□□□□ -0.22
USB1-216ENST00000624720 CCDC136Q96JN2 1154 aa13.65□□□□□ -0.22
USB1-216ENST00000624720 CCDC88BA6NC98 1476 aa13.64□□□□□ -0.23
USB1-216ENST00000624720 NEFLP07196 543 aa13.64□□□□□ -0.23
USB1-216ENST00000624720 PDE4CQ08493 712 aa13.61□□□□□ -0.23
USB1-216ENST00000624720 NCAPD3P42695 1498 aa13.59□□□□□ -0.23
USB1-216ENST00000624720 SMARCA2P51531 1590 aa13.59□□□□□ -0.23
USB1-216ENST00000624720 PEG3Q9GZU2 1588 aa13.59□□□□□ -0.23
USB1-216ENST00000624720 ATAD2BQ9ULI0 1458 aa13.58□□□□□ -0.24
USB1-216ENST00000624720 HMGXB3Q12766 1538 aa13.57□□□□□ -0.24
USB1-216ENST00000624720 BAZ1BQ9UIG0 1483 aaKnown RBP13.57□□□□□ -0.24
USB1-216ENST00000624720 ABCC8Q09428 1581 aa13.56□□□□□ -0.24
USB1-216ENST00000624720 TOP2AP11388 1531 aaKnown RBP13.56□□□□□ -0.24
USB1-216ENST00000624720 ERICH6BQ5W0A0 696 aa13.51□□□□□ -0.25
USB1-216ENST00000624720 TULP1O00294 542 aaPredicted RBP13.43□□□□□ -0.26
USB1-216ENST00000624720 FGD1P98174 961 aa13.4□□□□□ -0.26
USB1-216ENST00000624720 HOMEZQ8IX15 550 aa13.38□□□□□ -0.27
USB1-216ENST00000624720 BCL11BQ9C0K0 894 aaPredicted RBP13.38□□□□□ -0.27
USB1-216ENST00000624720 SOGA1O94964 1423 aa13.38□□□□□ -0.27
USB1-216ENST00000624720 TSHZ2Q9NRE2 1034 aa13.36□□□□□ -0.27
USB1-216ENST00000624720 UBTFP17480 764 aaKnown RBP13.36□□□□□ -0.27
USB1-216ENST00000624720 RUSC2Q8N2Y8 1516 aa13.34□□□□□ -0.27
USB1-216ENST00000624720 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.34□□□□□ -0.27
USB1-216ENST00000624720 MYT1LQ9UL68 1186 aa13.32□□□□□ -0.28
USB1-216ENST00000624720 WRNQ14191 1432 aaPredicted RBP eCLIP13.32□□□□□ -0.28
USB1-216ENST00000624720 A0A0U1RQG5 324 aaPredicted RBP13.31□□□□□ -0.28
USB1-216ENST00000624720 TAF7LQ5H9L4 462 aa13.31□□□□□ -0.28
USB1-216ENST00000624720 LAMC3Q9Y6N6 1575 aa13.29□□□□□ -0.28
USB1-216ENST00000624720 NESP48681 1621 aa13.23□□□□□ -0.29
USB1-216ENST00000624720 CLSPNQ9HAW4 1339 aa13.22□□□□□ -0.29
USB1-216ENST00000624720 AAMPQ13685 434 aa13.22□□□□□ -0.29
USB1-216ENST00000624720 CUX2O14529 1486 aa13.22□□□□□ -0.29
USB1-216ENST00000624720 DEKP35659 375 aaKnown RBP13.2□□□□□ -0.3
USB1-216ENST00000624720 SYNJ1O43426 1573 aa13.2□□□□□ -0.3
USB1-216ENST00000624720 GLIPR1L2Q4G1C9 344 aa13.19□□□□□ -0.3
USB1-216ENST00000624720 ZMYND15Q9H091 742 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms