RNA–Protein interactions for RNA: ENST00000622179.4

SIRPA-204, Transcript of signal regulatory protein alpha, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SIRPA, Length 4,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIRPA-204ENST00000622179 SLC4A1APQ9BWU0 796 aaKnown RBP18.36■□□□□ 0.53
SIRPA-204ENST00000622179 MYT1Q01538 1121 aa18.34■□□□□ 0.53
SIRPA-204ENST00000622179 FAM9BQ8IZU0 186 aa18.33■□□□□ 0.52
SIRPA-204ENST00000622179 SYNJ1O43426 1573 aa18.32■□□□□ 0.52
SIRPA-204ENST00000622179 RAB3GAP2Q9H2M9 1393 aa18.3■□□□□ 0.52
SIRPA-204ENST00000622179 EIF4G1Q04637 1599 aaKnown RBP18.29■□□□□ 0.52
SIRPA-204ENST00000622179 SETD5Q9C0A6 1442 aa18.28■□□□□ 0.52
SIRPA-204ENST00000622179 TSPY4P0CV99 314 aa18.28■□□□□ 0.52
SIRPA-204ENST00000622179 TSPY10P0CW01 314 aa18.28■□□□□ 0.52
SIRPA-204ENST00000622179 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.28■□□□□ 0.52
SIRPA-204ENST00000622179 KDM2AQ9Y2K7 1162 aa18.28■□□□□ 0.52
SIRPA-204ENST00000622179 FHOD3Q2V2M9 1422 aa18.27■□□□□ 0.52
SIRPA-204ENST00000622179 NCAPD3P42695 1498 aa18.26■□□□□ 0.51
SIRPA-204ENST00000622179 EIF4G2P78344 907 aaKnown RBP eCLIP18.26■□□□□ 0.51
SIRPA-204ENST00000622179 IGF1RP08069 1367 aa18.25■□□□□ 0.51
SIRPA-204ENST00000622179 CFDP1Q9UEE9 299 aaPredicted RBP18.24■□□□□ 0.51
SIRPA-204ENST00000622179 BICRAQ9NZM4 1560 aa18.22■□□□□ 0.51
SIRPA-204ENST00000622179 ARHGAP35Q9NRY4 1499 aa18.22■□□□□ 0.51
SIRPA-204ENST00000622179 PLEKHD1A6NEE1 506 aa18.22■□□□□ 0.51
SIRPA-204ENST00000622179 DHX57Q6P158 1386 aaKnown RBP18.21■□□□□ 0.51
SIRPA-204ENST00000622179 KIF21BO75037 1637 aa18.21■□□□□ 0.51
SIRPA-204ENST00000622179 FANCD2Q9BXW9 1451 aa18.21■□□□□ 0.51
SIRPA-204ENST00000622179 PDS5BQ9NTI5 1447 aa18.2■□□□□ 0.5
SIRPA-204ENST00000622179 MRS2Q9HD23 443 aa18.19■□□□□ 0.5
SIRPA-204ENST00000622179 IRX6P78412 446 aaPredicted RBP18.17■□□□□ 0.5
SIRPA-204ENST00000622179 FGD5Q6ZNL6 1462 aa18.17■□□□□ 0.5
SIRPA-204ENST00000622179 KCNH8Q96L42 1107 aa18.16■□□□□ 0.5
SIRPA-204ENST00000622179 SALL2Q9Y467 1007 aaPredicted RBP18.15■□□□□ 0.5
SIRPA-204ENST00000622179 FMN1Q68DA7 1419 aa18.14■□□□□ 0.49
SIRPA-204ENST00000622179 FOXD1Q16676 465 aa18.14■□□□□ 0.49
SIRPA-204ENST00000622179 RAD54L2Q9Y4B4 1467 aa18.14■□□□□ 0.49
SIRPA-204ENST00000622179 ERCC6Q03468 1493 aa18.14■□□□□ 0.49
SIRPA-204ENST00000622179 SENP3-EIF4A1A0A087X0R7 540 aa18.12■□□□□ 0.49
SIRPA-204ENST00000622179 ARAP1Q96P48 1450 aa18.1■□□□□ 0.49
SIRPA-204ENST00000622179 CFTRP13569 1480 aa18.1■□□□□ 0.49
SIRPA-204ENST00000622179 TIMELESSQ9UNS1 1208 aa18.1■□□□□ 0.49
SIRPA-204ENST00000622179 RGL3Q3MIN7 710 aa18.09■□□□□ 0.49
SIRPA-204ENST00000622179 TMC1Q8TDI8 760 aa18.09■□□□□ 0.49
SIRPA-204ENST00000622179 PPP1R15AO75807 674 aaPredicted RBP18.06■□□□□ 0.48
SIRPA-204ENST00000622179 DAXXQ9UER7 740 aaPredicted RBP18.06■□□□□ 0.48
SIRPA-204ENST00000622179 PRXQ9BXM0 1461 aa18.05■□□□□ 0.48
SIRPA-204ENST00000622179 CUX1P39880 1505 aa18.05■□□□□ 0.48
SIRPA-204ENST00000622179 TOP2BQ02880 1626 aa18.05■□□□□ 0.48
SIRPA-204ENST00000622179 CHGAP10645 457 aaKnown RBP18.05■□□□□ 0.48
SIRPA-204ENST00000622179 UNC13AQ9UPW8 1703 aa18.04■□□□□ 0.48
SIRPA-204ENST00000622179 SUPT16HQ9Y5B9 1047 aaKnown RBP18.03■□□□□ 0.48
SIRPA-204ENST00000622179 PHLDB1Q86UU1 1377 aa18■□□□□ 0.47
SIRPA-204ENST00000622179 HSPA5P11021 654 aaKnown RBP17.99■□□□□ 0.47
SIRPA-204ENST00000622179 MPHOSPH9Q99550 1183 aa17.99■□□□□ 0.47
SIRPA-204ENST00000622179 ERICH3Q5RHP9 1530 aa17.99■□□□□ 0.47
SIRPA-204ENST00000622179 CARD11Q9BXL7 1154 aa17.97■□□□□ 0.47
SIRPA-204ENST00000622179 NESP48681 1621 aa17.97■□□□□ 0.47
SIRPA-204ENST00000622179 HMGXB3Q12766 1538 aa17.96■□□□□ 0.47
SIRPA-204ENST00000622179 NPM1P06748 294 aaKnown RBP eCLIP17.94■□□□□ 0.46
SIRPA-204ENST00000622179 GAPVD1Q14C86 1478 aa17.93■□□□□ 0.46
SIRPA-204ENST00000622179 LRRC9Q6ZRR7 1453 aa17.92■□□□□ 0.46
SIRPA-204ENST00000622179 PKD2Q13563 968 aa17.91■□□□□ 0.46
SIRPA-204ENST00000622179 L3MBTL2Q969R5 705 aa17.91■□□□□ 0.46
SIRPA-204ENST00000622179 PEG3Q9GZU2 1588 aa17.91■□□□□ 0.46
SIRPA-204ENST00000622179 DCAF11Q8TEB1 546 aa17.89■□□□□ 0.45
SIRPA-204ENST00000622179 CCER2I3L3R5 266 aa17.89■□□□□ 0.45
SIRPA-204ENST00000622179 CCDC136Q96JN2 1154 aa17.88■□□□□ 0.45
SIRPA-204ENST00000622179 RRBP1Q9P2E9 1410 aaKnown RBP17.87■□□□□ 0.45
SIRPA-204ENST00000622179 SENP3Q9H4L4 574 aaPredicted RBP17.87■□□□□ 0.45
SIRPA-204ENST00000622179 RTL5Q5HYW3 569 aaPredicted RBP17.86■□□□□ 0.45
SIRPA-204ENST00000622179 CC2D2AQ9P2K1 1620 aa17.85■□□□□ 0.45
SIRPA-204ENST00000622179 JPH4Q96JJ6 628 aa17.85■□□□□ 0.45
SIRPA-204ENST00000622179 NPM2Q86SE8 214 aaKnown RBP17.85■□□□□ 0.45
SIRPA-204ENST00000622179 AQRO60306 1485 aaKnown RBP eCLIP17.84■□□□□ 0.45
SIRPA-204ENST00000622179 CANXP27824 592 aaKnown RBP17.84■□□□□ 0.45
SIRPA-204ENST00000622179 CARMIL2Q6F5E8 1435 aa17.83■□□□□ 0.45
SIRPA-204ENST00000622179 DNAJC5BQ9UF47 199 aa17.83■□□□□ 0.45
SIRPA-204ENST00000622179 FGD6Q6ZV73 1430 aa17.83■□□□□ 0.44
SIRPA-204ENST00000622179 CCDC18Q5T9S5 1454 aa17.82■□□□□ 0.44
SIRPA-204ENST00000622179 POLA1P09884 1462 aaPredicted RBP17.81■□□□□ 0.44
SIRPA-204ENST00000622179 HNRNPMP52272 730 aaKnown RBP eCLIP17.8■□□□□ 0.44
SIRPA-204ENST00000622179 TOPBP1Q92547 1522 aa17.79■□□□□ 0.44
SIRPA-204ENST00000622179 NUP155O75694 1391 aa17.79■□□□□ 0.44
SIRPA-204ENST00000622179 ZNF644Q9H582 1327 aaPredicted RBP17.79■□□□□ 0.44
SIRPA-204ENST00000622179 CASKIN1Q8WXD9 1431 aa17.79■□□□□ 0.44
SIRPA-204ENST00000622179 ANP32AP39687 249 aaKnown RBP17.78■□□□□ 0.44
SIRPA-204ENST00000622179 WDR43Q15061 677 aaKnown RBP eCLIP17.78■□□□□ 0.44
SIRPA-204ENST00000622179 MYOM3Q5VTT5 1437 aa17.74■□□□□ 0.43
SIRPA-204ENST00000622179 ANKRD30AQ9BXX3 1397 aa17.74■□□□□ 0.43
SIRPA-204ENST00000622179 STAG3Q9UJ98 1225 aa17.74■□□□□ 0.43
SIRPA-204ENST00000622179 CC2D1BQ5T0F9 858 aaKnown RBP17.73■□□□□ 0.43
SIRPA-204ENST00000622179 BCL11AQ9H165 835 aa17.72■□□□□ 0.43
SIRPA-204ENST00000622179 NCOA2Q15596 1464 aa17.72■□□□□ 0.43
SIRPA-204ENST00000622179 TIAM1Q13009 1591 aa17.71■□□□□ 0.42
SIRPA-204ENST00000622179 B4GALNT3Q6L9W6 998 aa17.71■□□□□ 0.42
SIRPA-204ENST00000622179 FYCO1Q9BQS8 1478 aa17.7■□□□□ 0.42
SIRPA-204ENST00000622179 KNSTRNQ9Y448 316 aa17.68■□□□□ 0.42
SIRPA-204ENST00000622179 UACAQ9BZF9 1416 aa17.67■□□□□ 0.42
SIRPA-204ENST00000622179 PPP4R2Q9NY27 417 aa17.66■□□□□ 0.42
SIRPA-204ENST00000622179 BIVM-ERCC5R4GMW8 1640 aa17.65■□□□□ 0.42
SIRPA-204ENST00000622179 DNMBPQ6XZF7 1577 aa17.64■□□□□ 0.41
SIRPA-204ENST00000622179 NEFMP07197 916 aa17.64■□□□□ 0.41
SIRPA-204ENST00000622179 PLPPR3Q6T4P5 718 aa17.63■□□□□ 0.41
SIRPA-204ENST00000622179 ESF1Q9H501 851 aaKnown RBP17.63■□□□□ 0.41
SIRPA-204ENST00000622179 ABCA10Q8WWZ4 1543 aa17.61■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms