RNA–Protein interactions for RNA: ENST00000613228.1

PDE6A-204, Transcript of phosphodiesterase 6A, humanhuman

TSL 5 BASIC

Gene PDE6A, Length 5,398 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDE6A-204ENST00000613228 ANP32CO43423 234 aa12.12□□□□□ -0.47
PDE6A-204ENST00000613228 ZNF777Q9ULD5 760 aaPredicted RBP12.12□□□□□ -0.47
PDE6A-204ENST00000613228 TOP2BQ02880 1626 aa12.12□□□□□ -0.47
PDE6A-204ENST00000613228 CARMIL2Q6F5E8 1435 aa12.11□□□□□ -0.47
PDE6A-204ENST00000613228 PLEKHD1A6NEE1 506 aa12.11□□□□□ -0.47
PDE6A-204ENST00000613228 CC2D2AQ9P2K1 1620 aa12.11□□□□□ -0.47
PDE6A-204ENST00000613228 CCNB3Q8WWL7 1395 aa12.1□□□□□ -0.47
PDE6A-204ENST00000613228 FGD5Q6ZNL6 1462 aa12.09□□□□□ -0.47
PDE6A-204ENST00000613228 ARHGAP35Q9NRY4 1499 aa12.09□□□□□ -0.47
PDE6A-204ENST00000613228 ARID3CA6NKF2 412 aa12.09□□□□□ -0.47
PDE6A-204ENST00000613228 TSPY4P0CV99 314 aa12.09□□□□□ -0.47
PDE6A-204ENST00000613228 TSPY10P0CW01 314 aa12.09□□□□□ -0.47
PDE6A-204ENST00000613228 POLR3GLQ9BT43 218 aa12.08□□□□□ -0.48
PDE6A-204ENST00000613228 SYNJ1O43426 1573 aa12.05□□□□□ -0.48
PDE6A-204ENST00000613228 TIMELESSQ9UNS1 1208 aa12.02□□□□□ -0.48
PDE6A-204ENST00000613228 TDRD9Q8NDG6 1382 aaKnown RBP12.02□□□□□ -0.49
PDE6A-204ENST00000613228 LAMC3Q9Y6N6 1575 aa12.01□□□□□ -0.49
PDE6A-204ENST00000613228 DNMBPQ6XZF7 1577 aa12.01□□□□□ -0.49
PDE6A-204ENST00000613228 GAPVD1Q14C86 1478 aa12.01□□□□□ -0.49
PDE6A-204ENST00000613228 RUSC2Q8N2Y8 1516 aa12□□□□□ -0.49
PDE6A-204ENST00000613228 IGF1RP08069 1367 aa12□□□□□ -0.49
PDE6A-204ENST00000613228 MRC2Q9UBG0 1479 aa11.99□□□□□ -0.49
PDE6A-204ENST00000613228 CFDP1Q9UEE9 299 aaPredicted RBP11.99□□□□□ -0.49
PDE6A-204ENST00000613228 EIF5BO60841 1220 aaKnown RBP11.99□□□□□ -0.49
PDE6A-204ENST00000613228 SETD5Q9C0A6 1442 aa11.98□□□□□ -0.49
PDE6A-204ENST00000613228 PRKCSHP14314 528 aaPredicted RBP11.97□□□□□ -0.49
PDE6A-204ENST00000613228 CUX1P39880 1505 aa11.97□□□□□ -0.49
PDE6A-204ENST00000613228 EFCAB5A4FU69 1503 aa11.96□□□□□ -0.49
PDE6A-204ENST00000613228 ZNF326Q5BKZ1 582 aaKnown RBP11.96□□□□□ -0.49
PDE6A-204ENST00000613228 CHIC2Q9UKJ5 165 aa11.96□□□□□ -0.49
PDE6A-204ENST00000613228 DAXXQ9UER7 740 aaPredicted RBP11.96□□□□□ -0.5
PDE6A-204ENST00000613228 CCDC18Q5T9S5 1454 aa11.95□□□□□ -0.5
PDE6A-204ENST00000613228 IFT140Q96RY7 1462 aa11.95□□□□□ -0.5
PDE6A-204ENST00000613228 BIVM-ERCC5R4GMW8 1640 aa11.94□□□□□ -0.5
PDE6A-204ENST00000613228 PRXQ9BXM0 1461 aa11.94□□□□□ -0.5
PDE6A-204ENST00000613228 TOPBP1Q92547 1522 aa11.93□□□□□ -0.5
PDE6A-204ENST00000613228 GRIN2BQ13224 1484 aa11.93□□□□□ -0.5
PDE6A-204ENST00000613228 FHOD3Q2V2M9 1422 aa11.92□□□□□ -0.5
PDE6A-204ENST00000613228 RAD54L2Q9Y4B4 1467 aa11.91□□□□□ -0.5
PDE6A-204ENST00000613228 SLC4A1APQ9BWU0 796 aaKnown RBP11.91□□□□□ -0.5
PDE6A-204ENST00000613228 RRP7BPQ9NSQ0 103 aa11.9□□□□□ -0.5
PDE6A-204ENST00000613228 CUL7Q14999 1698 aa11.89□□□□□ -0.51
PDE6A-204ENST00000613228 ABCA10Q8WWZ4 1543 aa11.89□□□□□ -0.51
PDE6A-204ENST00000613228 FYCO1Q9BQS8 1478 aa11.87□□□□□ -0.51
PDE6A-204ENST00000613228 CASKIN1Q8WXD9 1431 aa11.87□□□□□ -0.51
PDE6A-204ENST00000613228 KANK4Q5T7N3 995 aaPredicted RBP11.87□□□□□ -0.51
PDE6A-204ENST00000613228 ESF1Q9H501 851 aaKnown RBP11.87□□□□□ -0.51
PDE6A-204ENST00000613228 EIF4G2P78344 907 aaKnown RBP eCLIP11.86□□□□□ -0.51
PDE6A-204ENST00000613228 POLA1P09884 1462 aaPredicted RBP11.86□□□□□ -0.51
PDE6A-204ENST00000613228 SLC24A1O60721 1099 aa11.86□□□□□ -0.51
PDE6A-204ENST00000613228 RSPH4AQ5TD94 716 aa11.86□□□□□ -0.51
PDE6A-204ENST00000613228 ANKRD30AQ9BXX3 1397 aa11.82□□□□□ -0.52
PDE6A-204ENST00000613228 BCANQ96GW7 911 aa11.82□□□□□ -0.52
PDE6A-204ENST00000613228 KANK1Q14678 1352 aa11.82□□□□□ -0.52
PDE6A-204ENST00000613228 KCNH8Q96L42 1107 aa11.82□□□□□ -0.52
PDE6A-204ENST00000613228 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.81□□□□□ -0.52
PDE6A-204ENST00000613228 NESP48681 1621 aa11.8□□□□□ -0.52
PDE6A-204ENST00000613228 RAB3GAP2Q9H2M9 1393 aa11.8□□□□□ -0.52
PDE6A-204ENST00000613228 LRRC9Q6ZRR7 1453 aa11.79□□□□□ -0.52
PDE6A-204ENST00000613228 JPH4Q96JJ6 628 aa11.79□□□□□ -0.52
PDE6A-204ENST00000613228 ARAP1Q96P48 1450 aa11.79□□□□□ -0.52
PDE6A-204ENST00000613228 CDCA8Q53HL2 280 aa11.78□□□□□ -0.52
PDE6A-204ENST00000613228 AQRO60306 1485 aaKnown RBP eCLIP11.77□□□□□ -0.52
PDE6A-204ENST00000613228 MAP3K1Q13233 1512 aa11.77□□□□□ -0.53
PDE6A-204ENST00000613228 EHBP1L1Q8N3D4 1523 aa11.77□□□□□ -0.53
PDE6A-204ENST00000613228 STAG3Q9UJ98 1225 aa11.77□□□□□ -0.53
PDE6A-204ENST00000613228 HECW1Q76N89 1606 aa11.76□□□□□ -0.53
PDE6A-204ENST00000613228 DDX10Q13206 875 aaKnown RBP11.76□□□□□ -0.53
PDE6A-204ENST00000613228 NEFMP07197 916 aa11.76□□□□□ -0.53
PDE6A-204ENST00000613228 PTPRGP23470 1445 aa11.75□□□□□ -0.53
PDE6A-204ENST00000613228 MYOM3Q5VTT5 1437 aa11.75□□□□□ -0.53
PDE6A-204ENST00000613228 RRBP1Q9P2E9 1410 aaKnown RBP11.75□□□□□ -0.53
PDE6A-204ENST00000613228 EFCAB2Q5VUJ9 269 aa11.75□□□□□ -0.53
PDE6A-204ENST00000613228 CNGB1Q14028 1251 aaPredicted RBP11.74□□□□□ -0.53
PDE6A-204ENST00000613228 PRDM2Q13029 1718 aa11.74□□□□□ -0.53
PDE6A-204ENST00000613228 ANP32AP39687 249 aaKnown RBP11.73□□□□□ -0.53
PDE6A-204ENST00000613228 CHGAP10645 457 aaKnown RBP11.73□□□□□ -0.53
PDE6A-204ENST00000613228 FGD6Q6ZV73 1430 aa11.72□□□□□ -0.53
PDE6A-204ENST00000613228 TIAM1Q13009 1591 aa11.72□□□□□ -0.53
PDE6A-204ENST00000613228 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.71□□□□□ -0.53
PDE6A-204ENST00000613228 ERICH6BQ5W0A0 696 aa11.71□□□□□ -0.54
PDE6A-204ENST00000613228 MAGI1Q96QZ7 1491 aaPredicted RBP11.7□□□□□ -0.54
PDE6A-204ENST00000613228 KIAA0586Q9BVV6 1533 aa11.7□□□□□ -0.54
PDE6A-204ENST00000613228 DHX57Q6P158 1386 aaKnown RBP11.69□□□□□ -0.54
PDE6A-204ENST00000613228 SNAPC4Q5SXM2 1469 aa11.69□□□□□ -0.54
PDE6A-204ENST00000613228 KDM2AQ9Y2K7 1162 aa11.68□□□□□ -0.54
PDE6A-204ENST00000613228 NCOA2Q15596 1464 aa11.68□□□□□ -0.54
PDE6A-204ENST00000613228 IQGAP2Q13576 1575 aa11.68□□□□□ -0.54
PDE6A-204ENST00000613228 MPHOSPH9Q99550 1183 aa11.68□□□□□ -0.54
PDE6A-204ENST00000613228 MIA2Q96PC5 1412 aa11.68□□□□□ -0.54
PDE6A-204ENST00000613228 URB2Q14146 1524 aaKnown RBP11.68□□□□□ -0.54
PDE6A-204ENST00000613228 MIER1Q8N108 512 aa11.67□□□□□ -0.54
PDE6A-204ENST00000613228 SIN3AQ96ST3 1273 aa11.66□□□□□ -0.54
PDE6A-204ENST00000613228 CARD11Q9BXL7 1154 aa11.66□□□□□ -0.54
PDE6A-204ENST00000613228 SYNJ2O15056 1496 aa11.66□□□□□ -0.54
PDE6A-204ENST00000613228 TMC1Q8TDI8 760 aa11.66□□□□□ -0.54
PDE6A-204ENST00000613228 SUPT6HQ7KZ85 1726 aaKnown RBP11.65□□□□□ -0.55
PDE6A-204ENST00000613228 THOC2Q8NI27 1593 aaKnown RBP11.64□□□□□ -0.55
PDE6A-204ENST00000613228 CCER2I3L3R5 266 aa11.64□□□□□ -0.55
PDE6A-204ENST00000613228 WDR97A6NE52 1622 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms