RNA–Protein interactions for RNA: ENST00000589788.1

SDF2-208, Transcript of stromal cell derived factor 2, humanhuman

TSL 2

Gene SDF2, Length 1,342 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF2-208ENST00000589788 CHD1O14646 1710 aa17.87■□□□□ 0.45
SDF2-208ENST00000589788 PBRM1Q86U86 1689 aa17.87■□□□□ 0.45
SDF2-208ENST00000589788 ABCA5Q8WWZ7 1642 aa17.86■□□□□ 0.45
SDF2-208ENST00000589788 MAGI1Q96QZ7 1491 aaPredicted RBP17.85■□□□□ 0.45
SDF2-208ENST00000589788 MYCNP04198 464 aaPredicted RBP17.85■□□□□ 0.45
SDF2-208ENST00000589788 CHMP7Q8WUX9 453 aaPredicted RBP17.8■□□□□ 0.44
SDF2-208ENST00000589788 SYNJ2O15056 1496 aa17.78■□□□□ 0.44
SDF2-208ENST00000589788 DCAF8L1A6NGE4 600 aa17.78■□□□□ 0.44
SDF2-208ENST00000589788 ERICH3Q5RHP9 1530 aa17.73■□□□□ 0.43
SDF2-208ENST00000589788 ADAMTS12P58397 1594 aa17.71■□□□□ 0.43
SDF2-208ENST00000589788 KIF27Q86VH2 1401 aa17.68■□□□□ 0.42
SDF2-208ENST00000589788 ATXN8OSP0DMR3 200 aa17.68■□□□□ 0.42
SDF2-208ENST00000589788 FHAD1B1AJZ9 1412 aa17.68■□□□□ 0.42
SDF2-208ENST00000589788 GRIN2AQ12879 1464 aa17.67■□□□□ 0.42
SDF2-208ENST00000589788 RIMBP3CA6NJZ7 1639 aa17.66■□□□□ 0.42
SDF2-208ENST00000589788 RIMBP3BA6NNM3 1639 aa17.66■□□□□ 0.42
SDF2-208ENST00000589788 RIMBP3Q9UFD9 1639 aa17.66■□□□□ 0.42
SDF2-208ENST00000589788 ARHGEF11O15085 1522 aa17.65■□□□□ 0.42
SDF2-208ENST00000589788 CLASP1Q7Z460 1538 aa17.64■□□□□ 0.41
SDF2-208ENST00000589788 TRIM41Q8WV44 630 aa17.63■□□□□ 0.41
SDF2-208ENST00000589788 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.61■□□□□ 0.41
SDF2-208ENST00000589788 IGF1RP08069 1367 aa17.59■□□□□ 0.41
SDF2-208ENST00000589788 CUL7Q14999 1698 aa17.58■□□□□ 0.4
SDF2-208ENST00000589788 NUP160Q12769 1436 aa17.57■□□□□ 0.4
SDF2-208ENST00000589788 CEP170Q5SW79 1584 aa17.57■□□□□ 0.4
SDF2-208ENST00000589788 U3KPZ7 1027 aaPredicted RBP17.52■□□□□ 0.4
SDF2-208ENST00000589788 CYB5RLQ6IPT4 315 aa17.51■□□□□ 0.39
SDF2-208ENST00000589788 CARMIL1Q5VZK9 1371 aa17.51■□□□□ 0.39
SDF2-208ENST00000589788 ARAP1Q96P48 1450 aa17.49■□□□□ 0.39
SDF2-208ENST00000589788 RUSC2Q8N2Y8 1516 aa17.47■□□□□ 0.39
SDF2-208ENST00000589788 SHROOM2Q13796 1616 aa17.45■□□□□ 0.38
SDF2-208ENST00000589788 ATF5Q9Y2D1 282 aaPredicted RBP17.43■□□□□ 0.38
SDF2-208ENST00000589788 KIAA0586Q9BVV6 1533 aa17.41■□□□□ 0.38
SDF2-208ENST00000589788 JPH4Q96JJ6 628 aa17.41■□□□□ 0.38
SDF2-208ENST00000589788 ERCC6L2Q5T890 1561 aa17.4■□□□□ 0.38
SDF2-208ENST00000589788 RAPGEF2Q9Y4G8 1499 aa17.4■□□□□ 0.38
SDF2-208ENST00000589788 PRG4Q92954 1404 aaPredicted RBP17.38■□□□□ 0.37
SDF2-208ENST00000589788 SAMD1Q6SPF0 538 aaPredicted RBP17.34■□□□□ 0.37
SDF2-208ENST00000589788 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.33■□□□□ 0.36
SDF2-208ENST00000589788 HNRNPUL2Q1KMD3 747 aaKnown RBP17.33■□□□□ 0.36
SDF2-208ENST00000589788 IQGAP2Q13576 1575 aa17.32■□□□□ 0.36
SDF2-208ENST00000589788 EEA1Q15075 1411 aa17.31■□□□□ 0.36
SDF2-208ENST00000589788 PRXQ9BXM0 1461 aa17.29■□□□□ 0.36
SDF2-208ENST00000589788 CTTNBP2Q8WZ74 1663 aa17.26■□□□□ 0.35
SDF2-208ENST00000589788 CARMIL2Q6F5E8 1435 aa17.25■□□□□ 0.35
SDF2-208ENST00000589788 FAM9AQ8IZU1 332 aaPredicted RBP17.25■□□□□ 0.35
SDF2-208ENST00000589788 TRHP20396 242 aaPredicted RBP17.21■□□□□ 0.34
SDF2-208ENST00000589788 UGGT2Q9NYU1 1516 aa17.2■□□□□ 0.34
SDF2-208ENST00000589788 PTPRGP23470 1445 aa17.18■□□□□ 0.34
SDF2-208ENST00000589788 TTBK1Q5TCY1 1321 aaPredicted RBP17.18■□□□□ 0.34
SDF2-208ENST00000589788 TNIKQ9UKE5 1360 aa17.18■□□□□ 0.34
SDF2-208ENST00000589788 DISP1Q96F81 1524 aa17.17■□□□□ 0.34
SDF2-208ENST00000589788 KIAA0556O60303 1618 aa17.14■□□□□ 0.33
SDF2-208ENST00000589788 NPM1P06748 294 aaKnown RBP eCLIP17.14■□□□□ 0.33
SDF2-208ENST00000589788 GOLGA3Q08378 1498 aa17.13■□□□□ 0.33
SDF2-208ENST00000589788 KIF21BO75037 1637 aa17.13■□□□□ 0.33
SDF2-208ENST00000589788 ADCY10Q96PN6 1610 aa17.12■□□□□ 0.33
SDF2-208ENST00000589788 FKBP8Q14318 412 aa17.05■□□□□ 0.32
SDF2-208ENST00000589788 UACAQ9BZF9 1416 aa17.05■□□□□ 0.32
SDF2-208ENST00000589788 UHRF1BP1LA0JNW5 1464 aa17.03■□□□□ 0.32
SDF2-208ENST00000589788 ABCC2Q92887 1545 aa17.02■□□□□ 0.32
SDF2-208ENST00000589788 UBTFP17480 764 aaKnown RBP17.02■□□□□ 0.32
SDF2-208ENST00000589788 RANGAP1P46060 587 aaPredicted RBP17.02■□□□□ 0.32
SDF2-208ENST00000589788 MAPKBP1O60336 1514 aa17.02■□□□□ 0.31
SDF2-208ENST00000589788 P3H3Q8IVL6 736 aa17.01■□□□□ 0.31
SDF2-208ENST00000589788 SAMD9Q5K651 1589 aa17■□□□□ 0.31
SDF2-208ENST00000589788 ZNF219Q9P2Y4 722 aaPredicted RBP16.99■□□□□ 0.31
SDF2-208ENST00000589788 APLP2Q06481 763 aa16.98■□□□□ 0.31
SDF2-208ENST00000589788 RNF39Q9H2S5 420 aa16.97■□□□□ 0.31
SDF2-208ENST00000589788 PLB1Q6P1J6 1458 aa16.97■□□□□ 0.31
SDF2-208ENST00000589788 KIF13AQ9H1H9 1805 aa16.97■□□□□ 0.31
SDF2-208ENST00000589788 ABCC10Q5T3U5 1492 aa16.94■□□□□ 0.3
SDF2-208ENST00000589788 KDM5BQ9UGL1 1544 aa16.94■□□□□ 0.3
SDF2-208ENST00000589788 ABCA8O94911 1581 aa16.94■□□□□ 0.3
SDF2-208ENST00000589788 FAM69CQ0P6D2 419 aa16.94■□□□□ 0.3
SDF2-208ENST00000589788 EFCAB5A4FU69 1503 aa16.94■□□□□ 0.3
SDF2-208ENST00000589788 ZCCHC11Q5TAX3 1644 aaKnown RBP16.93■□□□□ 0.3
SDF2-208ENST00000589788 DIP2BQ9P265 1576 aa16.92■□□□□ 0.3
SDF2-208ENST00000589788 ASXL2Q76L83 1435 aa16.92■□□□□ 0.3
SDF2-208ENST00000589788 FHOD3Q2V2M9 1422 aa16.91■□□□□ 0.3
SDF2-208ENST00000589788 RAPGEF6Q8TEU7 1601 aa16.87■□□□□ 0.29
SDF2-208ENST00000589788 SPINK5Q9NQ38 1064 aaPredicted RBP16.86■□□□□ 0.29
SDF2-208ENST00000589788 ARID3CA6NKF2 412 aa16.84■□□□□ 0.29
SDF2-208ENST00000589788 TSPOAP1O95153 1857 aa16.83■□□□□ 0.28
SDF2-208ENST00000589788 WDR7Q9Y4E6 1490 aa16.83■□□□□ 0.28
SDF2-208ENST00000589788 GLI2P10070 1586 aa16.82■□□□□ 0.28
SDF2-208ENST00000589788 EPRSP07814 1512 aaKnown RBP16.81■□□□□ 0.28
SDF2-208ENST00000589788 ATP10BO94823 1461 aa16.81■□□□□ 0.28
SDF2-208ENST00000589788 ARHGAP35Q9NRY4 1499 aa16.81■□□□□ 0.28
SDF2-208ENST00000589788 FMN1Q68DA7 1419 aa16.79■□□□□ 0.28
SDF2-208ENST00000589788 NUP153P49790 1475 aaKnown RBP16.79■□□□□ 0.28
SDF2-208ENST00000589788 KCNH8Q96L42 1107 aa16.77■□□□□ 0.28
SDF2-208ENST00000589788 MAP3K4Q9Y6R4 1608 aa16.75■□□□□ 0.27
SDF2-208ENST00000589788 C1QBPQ07021 282 aaKnown RBP16.73■□□□□ 0.27
SDF2-208ENST00000589788 ATP1B4Q9UN42 357 aaPredicted RBP16.73■□□□□ 0.27
SDF2-208ENST00000589788 CLIP1P30622 1438 aa16.73■□□□□ 0.27
SDF2-208ENST00000589788 HECW1Q76N89 1606 aa16.72■□□□□ 0.27
SDF2-208ENST00000589788 MKRN4PQ13434 485 aaPredicted RBP16.71■□□□□ 0.27
SDF2-208ENST00000589788 PPRC1Q5VV67 1664 aaKnown RBP16.71■□□□□ 0.27
SDF2-208ENST00000589788 CFAP43Q8NDM7 1665 aa16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 83.9 ms