RNA–Protein interactions for RNA: ENST00000589293.5

LINC01539-202, Transcript of long intergenic non-protein coding RNA 1539, humanhuman

TSL 4

Gene LINC01539, Length 580 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01539-202ENST00000589293 PEG3Q9GZU2 1588 aa10.65□□□□□ -0.71
LINC01539-202ENST00000589293 CLEC11AQ9Y240 323 aa10.62□□□□□ -0.71
LINC01539-202ENST00000589293 MROH2BQ7Z745 1585 aa10.6□□□□□ -0.71
LINC01539-202ENST00000589293 THOC2Q8NI27 1593 aaKnown RBP10.6□□□□□ -0.71
LINC01539-202ENST00000589293 KIF21AQ7Z4S6 1674 aa10.57□□□□□ -0.72
LINC01539-202ENST00000589293 CADPSQ9ULU8 1353 aa10.56□□□□□ -0.72
LINC01539-202ENST00000589293 MIER1Q8N108 512 aa10.55□□□□□ -0.72
LINC01539-202ENST00000589293 AMER1Q5JTC6 1135 aaPredicted RBP10.54□□□□□ -0.72
LINC01539-202ENST00000589293 CREBZFQ9NS37 354 aa10.54□□□□□ -0.72
LINC01539-202ENST00000589293 PRR29P0C7W0 189 aa10.53□□□□□ -0.72
LINC01539-202ENST00000589293 PLCD3Q8N3E9 789 aa10.53□□□□□ -0.72
LINC01539-202ENST00000589293 MRC2Q9UBG0 1479 aa10.53□□□□□ -0.72
LINC01539-202ENST00000589293 TRIM41Q8WV44 630 aa10.52□□□□□ -0.73
LINC01539-202ENST00000589293 MNX1P50219 401 aaPredicted RBP10.51□□□□□ -0.73
LINC01539-202ENST00000589293 CEP164Q9UPV0 1460 aa10.49□□□□□ -0.73
LINC01539-202ENST00000589293 WIZO95785 1651 aa10.47□□□□□ -0.73
LINC01539-202ENST00000589293 WDR62O43379 1518 aa10.46□□□□□ -0.74
LINC01539-202ENST00000589293 CHADLQ6NUI6 762 aa10.45□□□□□ -0.74
LINC01539-202ENST00000589293 KLHL34Q8N239 644 aa10.45□□□□□ -0.74
LINC01539-202ENST00000589293 FANCD2Q9BXW9 1451 aa10.44□□□□□ -0.74
LINC01539-202ENST00000589293 CHRDL2Q6WN34 429 aa10.44□□□□□ -0.74
LINC01539-202ENST00000589293 FXR2P51116 673 aaKnown RBP eCLIP10.43□□□□□ -0.74
LINC01539-202ENST00000589293 SPOCK2Q92563 424 aa10.43□□□□□ -0.74
LINC01539-202ENST00000589293 PKD2Q13563 968 aa10.41□□□□□ -0.74
LINC01539-202ENST00000589293 CFTRP13569 1480 aa10.39□□□□□ -0.75
LINC01539-202ENST00000589293 NUBP1P53384 320 aa10.38□□□□□ -0.75
LINC01539-202ENST00000589293 PIP4P2Q8N4L2 257 aa10.38□□□□□ -0.75
LINC01539-202ENST00000589293 RSF1Q96T23 1441 aaPredicted RBP10.37□□□□□ -0.75
LINC01539-202ENST00000589293 TOP2AP11388 1531 aaKnown RBP10.37□□□□□ -0.75
LINC01539-202ENST00000589293 PRKAR2AP13861 404 aaKnown RBP10.35□□□□□ -0.75
LINC01539-202ENST00000589293 POTEHQ6S545 545 aa10.35□□□□□ -0.75
LINC01539-202ENST00000589293 ZBTB47Q9UFB7 747 aaPredicted RBP10.35□□□□□ -0.75
LINC01539-202ENST00000589293 PLEKHG5O94827 1062 aa10.34□□□□□ -0.75
LINC01539-202ENST00000589293 RASEFQ8IZ41 740 aa10.31□□□□□ -0.76
LINC01539-202ENST00000589293 FARP1Q9Y4F1 1045 aaPredicted RBP10.31□□□□□ -0.76
LINC01539-202ENST00000589293 URB2Q14146 1524 aaKnown RBP10.31□□□□□ -0.76
LINC01539-202ENST00000589293 IFT140Q96RY7 1462 aa10.27□□□□□ -0.77
LINC01539-202ENST00000589293 PRDM2Q13029 1718 aa10.26□□□□□ -0.77
LINC01539-202ENST00000589293 ABCC8Q09428 1581 aa10.25□□□□□ -0.77
LINC01539-202ENST00000589293 CCDC88BA6NC98 1476 aa10.24□□□□□ -0.77
LINC01539-202ENST00000589293 CIZ1Q9ULV3 898 aaPredicted RBP10.23□□□□□ -0.77
LINC01539-202ENST00000589293 TOPBP1Q92547 1522 aa10.21□□□□□ -0.78
LINC01539-202ENST00000589293 ECM2O94769 699 aaPredicted RBP10.2□□□□□ -0.78
LINC01539-202ENST00000589293 NPM1P06748 294 aaKnown RBP eCLIP10.2□□□□□ -0.78
LINC01539-202ENST00000589293 ZNF608Q9ULD9 1512 aaPredicted RBP10.2□□□□□ -0.78
LINC01539-202ENST00000589293 RIMBP3CA6NJZ7 1639 aa10.19□□□□□ -0.78
LINC01539-202ENST00000589293 RIMBP3BA6NNM3 1639 aa10.19□□□□□ -0.78
LINC01539-202ENST00000589293 RIMBP3Q9UFD9 1639 aa10.19□□□□□ -0.78
LINC01539-202ENST00000589293 RGL2O15211 777 aa10.19□□□□□ -0.78
LINC01539-202ENST00000589293 RNF25Q96BH1 459 aaPredicted RBP10.18□□□□□ -0.78
LINC01539-202ENST00000589293 DNMBPQ6XZF7 1577 aa10.18□□□□□ -0.78
LINC01539-202ENST00000589293 DCAF8Q5TAQ9 597 aa10.17□□□□□ -0.78
LINC01539-202ENST00000589293 CYB5RLQ6IPT4 315 aa10.17□□□□□ -0.78
LINC01539-202ENST00000589293 FAM212AQ96EL1 285 aa10.17□□□□□ -0.78
LINC01539-202ENST00000589293 ARHGEF11O15085 1522 aa10.17□□□□□ -0.78
LINC01539-202ENST00000589293 GSE1Q14687 1217 aa10.16□□□□□ -0.78
LINC01539-202ENST00000589293 EIF4G3O43432 1585 aaKnown RBP10.16□□□□□ -0.78
LINC01539-202ENST00000589293 TSPYL2Q9H2G4 693 aaPredicted RBP10.14□□□□□ -0.79
LINC01539-202ENST00000589293 AQRO60306 1485 aaKnown RBP eCLIP10.13□□□□□ -0.79
LINC01539-202ENST00000589293 CCDC61Q9Y6R9 512 aa10.12□□□□□ -0.79
LINC01539-202ENST00000589293 SOGA1O94964 1423 aa10.1□□□□□ -0.79
LINC01539-202ENST00000589293 CHMP7Q8WUX9 453 aaPredicted RBP10.1□□□□□ -0.79
LINC01539-202ENST00000589293 POLA1P09884 1462 aaPredicted RBP10.1□□□□□ -0.79
LINC01539-202ENST00000589293 PYGBP11216 843 aa10.09□□□□□ -0.79
LINC01539-202ENST00000589293 CHD1O14646 1710 aa10.09□□□□□ -0.79
LINC01539-202ENST00000589293 TARBP1Q13395 1621 aaKnown RBP10.08□□□□□ -0.8
LINC01539-202ENST00000589293 CHRM1P11229 460 aaPredicted RBP10.08□□□□□ -0.8
LINC01539-202ENST00000589293 TDRD9Q8NDG6 1382 aaKnown RBP10.08□□□□□ -0.8
LINC01539-202ENST00000589293 C19orf67A6NJJ6 358 aa10.07□□□□□ -0.8
LINC01539-202ENST00000589293 RAD54L2Q9Y4B4 1467 aa10.06□□□□□ -0.8
LINC01539-202ENST00000589293 CD44P16070 742 aaKnown RBP10.05□□□□□ -0.8
LINC01539-202ENST00000589293 SNAPC4Q5SXM2 1469 aa10.04□□□□□ -0.8
LINC01539-202ENST00000589293 FGD5Q6ZNL6 1462 aa10.04□□□□□ -0.8
LINC01539-202ENST00000589293 ARAP1Q96P48 1450 aa10.04□□□□□ -0.8
LINC01539-202ENST00000589293 WDR97A6NE52 1622 aa10.04□□□□□ -0.8
LINC01539-202ENST00000589293 SYNJ1O43426 1573 aa10.03□□□□□ -0.8
LINC01539-202ENST00000589293 EVX2Q03828 476 aa10.03□□□□□ -0.8
LINC01539-202ENST00000589293 GRIN2BQ13224 1484 aa10.02□□□□□ -0.81
LINC01539-202ENST00000589293 MAGI1Q96QZ7 1491 aaPredicted RBP10.02□□□□□ -0.81
LINC01539-202ENST00000589293 ZRANB1Q9UGI0 708 aa10.01□□□□□ -0.81
LINC01539-202ENST00000589293 PHF12Q96QT6 1004 aa10□□□□□ -0.81
LINC01539-202ENST00000589293 RIOK3O14730 519 aaKnown RBP9.99□□□□□ -0.81
LINC01539-202ENST00000589293 KIF12Q96FN5 646 aa9.99□□□□□ -0.81
LINC01539-202ENST00000589293 SYNJ2O15056 1496 aa9.98□□□□□ -0.81
LINC01539-202ENST00000589293 MAP3K13O43283 966 aa9.98□□□□□ -0.81
LINC01539-202ENST00000589293 CUX1P39880 1505 aa9.97□□□□□ -0.81
LINC01539-202ENST00000589293 SUPT5HO00267 1087 aaKnown RBP9.97□□□□□ -0.81
LINC01539-202ENST00000589293 GAPVD1Q14C86 1478 aa9.97□□□□□ -0.81
LINC01539-202ENST00000589293 ZNF579Q8NAF0 562 aaKnown RBP9.96□□□□□ -0.82
LINC01539-202ENST00000589293 PCDHB8Q9UN66 801 aa9.96□□□□□ -0.82
LINC01539-202ENST00000589293 PCDHB13Q9Y5F0 798 aa9.96□□□□□ -0.82
LINC01539-202ENST00000589293 CLASP1Q7Z460 1538 aa9.96□□□□□ -0.82
LINC01539-202ENST00000589293 PAK3O75914 559 aaPredicted RBP9.95□□□□□ -0.82
LINC01539-202ENST00000589293 IFNL1Q8IU54 200 aa9.94□□□□□ -0.82
LINC01539-202ENST00000589293 PBRM1Q86U86 1689 aa9.93□□□□□ -0.82
LINC01539-202ENST00000589293 HAX1O00165 279 aa9.92□□□□□ -0.82
LINC01539-202ENST00000589293 CHGAP10645 457 aaKnown RBP9.92□□□□□ -0.82
LINC01539-202ENST00000589293 HS6ST3Q8IZP7 471 aa9.92□□□□□ -0.82
LINC01539-202ENST00000589293 WRNQ14191 1432 aaPredicted RBP eCLIP9.91□□□□□ -0.82
LINC01539-202ENST00000589293 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms