RNA–Protein interactions for RNA: ENST00000589293.5

LINC01539-202, Transcript of long intergenic non-protein coding RNA 1539, humanhuman

TSL 4

Gene LINC01539, Length 580 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01539-202ENST00000589293 AEBP2Q6ZN18 517 aaPredicted RBP19.64■□□□□ 0.73
LINC01539-202ENST00000589293 CHIC1Q5VXU3 224 aa19.2■□□□□ 0.66
LINC01539-202ENST00000589293 PHF23Q9BUL5 403 aaPredicted RBP17.01■□□□□ 0.31
LINC01539-202ENST00000589293 SENP3Q9H4L4 574 aaPredicted RBP16.45■□□□□ 0.22
LINC01539-202ENST00000589293 PLPPR3Q6T4P5 718 aa15.58■□□□□ 0.08
LINC01539-202ENST00000589293 FOXD1Q16676 465 aa15.37■□□□□ 0.05
LINC01539-202ENST00000589293 PPP6R1Q9UPN7 881 aa14.97□□□□□ -0.01
LINC01539-202ENST00000589293 ADRA2BP18089 450 aa14.9□□□□□ -0.02
LINC01539-202ENST00000589293 PIAS4Q8N2W9 510 aaPredicted RBP14.45□□□□□ -0.1
LINC01539-202ENST00000589293 MSH5O43196 834 aa13.97□□□□□ -0.17
LINC01539-202ENST00000589293 PPP4R3CPQ6ZMV5 832 aa13.79□□□□□ -0.2
LINC01539-202ENST00000589293 NISCHQ9Y2I1 1504 aa13.79□□□□□ -0.2
LINC01539-202ENST00000589293 KCNA4P22459 653 aa13.71□□□□□ -0.21
LINC01539-202ENST00000589293 MAPK8IP2Q13387 824 aaPredicted RBP13.51□□□□□ -0.25
LINC01539-202ENST00000589293 SCAF1Q9H7N4 1312 aaKnown RBP13.42□□□□□ -0.26
LINC01539-202ENST00000589293 NCBP3Q53F19 620 aaKnown RBP13.34□□□□□ -0.27
LINC01539-202ENST00000589293 CNKSR2Q8WXI2 1034 aa13.34□□□□□ -0.27
LINC01539-202ENST00000589293 NPM3O75607 178 aaKnown RBP13.32□□□□□ -0.28
LINC01539-202ENST00000589293 DMRT2Q9Y5R5 561 aa13.21□□□□□ -0.29
LINC01539-202ENST00000589293 POTEDQ86YR6 584 aa13.18□□□□□ -0.3
LINC01539-202ENST00000589293 RNF216Q9NWF9 866 aaPredicted RBP13.06□□□□□ -0.32
LINC01539-202ENST00000589293 HOXD11P31277 338 aaPredicted RBP13.01□□□□□ -0.33
LINC01539-202ENST00000589293 SLC4A1APQ9BWU0 796 aaKnown RBP12.98□□□□□ -0.33
LINC01539-202ENST00000589293 DNAJC5BQ9UF47 199 aa12.9□□□□□ -0.34
LINC01539-202ENST00000589293 EHMT2Q96KQ7 1210 aa12.82□□□□□ -0.36
LINC01539-202ENST00000589293 ZBTB22O15209 634 aa12.7□□□□□ -0.38
LINC01539-202ENST00000589293 CSRNP3Q8WYN3 585 aa12.67□□□□□ -0.38
LINC01539-202ENST00000589293 SLC4A2P04920 1241 aa12.6□□□□□ -0.39
LINC01539-202ENST00000589293 ABCC9O60706 1549 aa12.54□□□□□ -0.4
LINC01539-202ENST00000589293 DCAF8L1A6NGE4 600 aa12.54□□□□□ -0.4
LINC01539-202ENST00000589293 FOXD4L1Q9NU39 408 aa12.49□□□□□ -0.41
LINC01539-202ENST00000589293 CCDC180Q9P1Z9 1646 aa12.42□□□□□ -0.42
LINC01539-202ENST00000589293 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.29□□□□□ -0.44
LINC01539-202ENST00000589293 U3KPZ7 1027 aaPredicted RBP12.25□□□□□ -0.45
LINC01539-202ENST00000589293 MYCNP04198 464 aaPredicted RBP12.21□□□□□ -0.45
LINC01539-202ENST00000589293 RNF39Q9H2S5 420 aa12.09□□□□□ -0.47
LINC01539-202ENST00000589293 ATF5Q9Y2D1 282 aaPredicted RBP12.04□□□□□ -0.48
LINC01539-202ENST00000589293 ATXN8OSP0DMR3 200 aa12□□□□□ -0.49
LINC01539-202ENST00000589293 SAMD1Q6SPF0 538 aaPredicted RBP11.95□□□□□ -0.5
LINC01539-202ENST00000589293 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.93□□□□□ -0.5
LINC01539-202ENST00000589293 HNRNPUL2Q1KMD3 747 aaKnown RBP11.93□□□□□ -0.5
LINC01539-202ENST00000589293 RB1CC1Q8TDY2 1594 aa11.92□□□□□ -0.5
LINC01539-202ENST00000589293 SPINK5Q9NQ38 1064 aaPredicted RBP11.87□□□□□ -0.51
LINC01539-202ENST00000589293 C1QBPQ07021 282 aaKnown RBP11.86□□□□□ -0.51
LINC01539-202ENST00000589293 DCAF8L2P0C7V8 631 aa11.85□□□□□ -0.51
LINC01539-202ENST00000589293 NACADO15069 1562 aa11.79□□□□□ -0.52
LINC01539-202ENST00000589293 APLP2Q06481 763 aa11.72□□□□□ -0.53
LINC01539-202ENST00000589293 ZNF219Q9P2Y4 722 aaPredicted RBP11.71□□□□□ -0.53
LINC01539-202ENST00000589293 CAPN15O75808 1086 aa11.69□□□□□ -0.54
LINC01539-202ENST00000589293 TRHP20396 242 aaPredicted RBP11.69□□□□□ -0.54
LINC01539-202ENST00000589293 PABPN1Q86U42 306 aaKnown RBP eCLIP11.68□□□□□ -0.54
LINC01539-202ENST00000589293 CACNB1Q02641 598 aaPredicted RBP11.6□□□□□ -0.55
LINC01539-202ENST00000589293 MYO15BQ96JP2 1530 aa11.56□□□□□ -0.56
LINC01539-202ENST00000589293 ABCB7O75027 752 aa11.56□□□□□ -0.56
LINC01539-202ENST00000589293 POLA2Q14181 598 aa11.56□□□□□ -0.56
LINC01539-202ENST00000589293 DSG3P32926 999 aa11.55□□□□□ -0.56
LINC01539-202ENST00000589293 UNC13AQ9UPW8 1703 aa11.52□□□□□ -0.56
LINC01539-202ENST00000589293 MKRN4PQ13434 485 aaPredicted RBP11.52□□□□□ -0.57
LINC01539-202ENST00000589293 BICRAQ9NZM4 1560 aa11.45□□□□□ -0.58
LINC01539-202ENST00000589293 ZCCHC6Q5VYS8 1495 aaKnown RBP11.39□□□□□ -0.59
LINC01539-202ENST00000589293 SHROOM4Q9ULL8 1493 aa11.39□□□□□ -0.59
LINC01539-202ENST00000589293 DCAF1Q9Y4B6 1507 aa11.38□□□□□ -0.59
LINC01539-202ENST00000589293 FKBP8Q14318 412 aa11.37□□□□□ -0.59
LINC01539-202ENST00000589293 SCRIBQ14160 1630 aa11.33□□□□□ -0.6
LINC01539-202ENST00000589293 CECR2Q9BXF3 1484 aa11.32□□□□□ -0.6
LINC01539-202ENST00000589293 CC2D2AQ9P2K1 1620 aa11.29□□□□□ -0.6
LINC01539-202ENST00000589293 FBLN2P98095 1184 aa11.29□□□□□ -0.6
LINC01539-202ENST00000589293 ZBTB12Q9Y330 459 aaPredicted RBP11.26□□□□□ -0.61
LINC01539-202ENST00000589293 EIF4G1Q04637 1599 aaKnown RBP11.24□□□□□ -0.61
LINC01539-202ENST00000589293 SPDYE4A6NLX3 237 aa11.2□□□□□ -0.62
LINC01539-202ENST00000589293 OSCARQ8IYS5 282 aa11.2□□□□□ -0.62
LINC01539-202ENST00000589293 PROM2Q8N271 834 aa11.13□□□□□ -0.63
LINC01539-202ENST00000589293 SSUH2Q9Y2M2 353 aa11.06□□□□□ -0.64
LINC01539-202ENST00000589293 SPDYE2BA6NHP3 402 aa11.04□□□□□ -0.64
LINC01539-202ENST00000589293 SPDYE6P0CI01 402 aa11.04□□□□□ -0.64
LINC01539-202ENST00000589293 SPDYE2Q495Y8 402 aa11.04□□□□□ -0.64
LINC01539-202ENST00000589293 ZNF692Q9BU19 519 aaPredicted RBP11.02□□□□□ -0.65
LINC01539-202ENST00000589293 DNAJC5Q9H3Z4 198 aa10.95□□□□□ -0.66
LINC01539-202ENST00000589293 ERCC6Q03468 1493 aa10.92□□□□□ -0.66
LINC01539-202ENST00000589293 CUX2O14529 1486 aa10.87□□□□□ -0.67
LINC01539-202ENST00000589293 NCAPD3P42695 1498 aa10.87□□□□□ -0.67
LINC01539-202ENST00000589293 RBM42Q9BTD8 480 aaKnown RBP10.85□□□□□ -0.67
LINC01539-202ENST00000589293 SMARCA2P51531 1590 aa10.83□□□□□ -0.68
LINC01539-202ENST00000589293 AKT1S1Q96B36 256 aa10.82□□□□□ -0.68
LINC01539-202ENST00000589293 ATAD2BQ9ULI0 1458 aa10.81□□□□□ -0.68
LINC01539-202ENST00000589293 FBXO3Q9UK99 471 aa10.8□□□□□ -0.68
LINC01539-202ENST00000589293 SMARCA4P51532 1647 aa10.78□□□□□ -0.68
LINC01539-202ENST00000589293 HMGXB3Q12766 1538 aa10.78□□□□□ -0.68
LINC01539-202ENST00000589293 VASPP50552 380 aaPredicted RBP10.77□□□□□ -0.69
LINC01539-202ENST00000589293 BAZ1BQ9UIG0 1483 aaKnown RBP10.76□□□□□ -0.69
LINC01539-202ENST00000589293 REM2Q8IYK8 340 aaPredicted RBP10.76□□□□□ -0.69
LINC01539-202ENST00000589293 BAZ1AQ9NRL2 1556 aaPredicted RBP10.75□□□□□ -0.69
LINC01539-202ENST00000589293 NESP48681 1621 aa10.7□□□□□ -0.7
LINC01539-202ENST00000589293 IFNLR1Q8IU57 520 aaPredicted RBP10.69□□□□□ -0.7
LINC01539-202ENST00000589293 PITPNM1O00562 1244 aa10.67□□□□□ -0.7
LINC01539-202ENST00000589293 STAG3Q9UJ98 1225 aa10.67□□□□□ -0.7
LINC01539-202ENST00000589293 LAMC3Q9Y6N6 1575 aa10.66□□□□□ -0.7
LINC01539-202ENST00000589293 RTN4Q9NQC3 1192 aaKnown RBP10.66□□□□□ -0.7
LINC01539-202ENST00000589293 PDS5BQ9NTI5 1447 aa10.66□□□□□ -0.7
LINC01539-202ENST00000589293 SPDYE1Q8NFV5 336 aaPredicted RBP10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms