RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 CHMP7Q8WUX9 453 aaPredicted RBP7.96□□□□□ -1.14
LIG3-211ENST00000588713 MROH2BQ7Z745 1585 aa7.96□□□□□ -1.14
LIG3-211ENST00000588713 SNAPC4Q5SXM2 1469 aa7.94□□□□□ -1.14
LIG3-211ENST00000588713 SPATA31D1Q6ZQQ2 1576 aa7.93□□□□□ -1.14
LIG3-211ENST00000588713 U3KPZ7 1027 aaPredicted RBP7.93□□□□□ -1.14
LIG3-211ENST00000588713 TOPBP1Q92547 1522 aa7.93□□□□□ -1.14
LIG3-211ENST00000588713 CAPN15O75808 1086 aa7.89□□□□□ -1.15
LIG3-211ENST00000588713 ABCC10Q5T3U5 1492 aa7.88□□□□□ -1.15
LIG3-211ENST00000588713 TDRD9Q8NDG6 1382 aaKnown RBP7.87□□□□□ -1.15
LIG3-211ENST00000588713 TARBP1Q13395 1621 aaKnown RBP7.87□□□□□ -1.15
LIG3-211ENST00000588713 SPINK5Q9NQ38 1064 aaPredicted RBP7.86□□□□□ -1.15
LIG3-211ENST00000588713 TSPOAP1O95153 1857 aa7.85□□□□□ -1.15
LIG3-211ENST00000588713 DIP2BQ9P265 1576 aa7.84□□□□□ -1.15
LIG3-211ENST00000588713 WIZO95785 1651 aa7.83□□□□□ -1.16
LIG3-211ENST00000588713 MAGI1Q96QZ7 1491 aaPredicted RBP7.82□□□□□ -1.16
LIG3-211ENST00000588713 RAD54L2Q9Y4B4 1467 aa7.82□□□□□ -1.16
LIG3-211ENST00000588713 NPM1P06748 294 aaKnown RBP eCLIP7.82□□□□□ -1.16
LIG3-211ENST00000588713 DNMBPQ6XZF7 1577 aa7.81□□□□□ -1.16
LIG3-211ENST00000588713 CERKQ8TCT0 537 aa7.81□□□□□ -1.16
LIG3-211ENST00000588713 ABCC8Q09428 1581 aa7.8□□□□□ -1.16
LIG3-211ENST00000588713 SLC4A2P04920 1241 aa7.8□□□□□ -1.16
LIG3-211ENST00000588713 DSG3P32926 999 aa7.8□□□□□ -1.16
LIG3-211ENST00000588713 POLA1P09884 1462 aaPredicted RBP7.8□□□□□ -1.16
LIG3-211ENST00000588713 CEP170Q5SW79 1584 aa7.79□□□□□ -1.16
LIG3-211ENST00000588713 PRDM2Q13029 1718 aa7.78□□□□□ -1.16
LIG3-211ENST00000588713 MAPKBP1O60336 1514 aa7.77□□□□□ -1.17
LIG3-211ENST00000588713 GRIN2BQ13224 1484 aa7.76□□□□□ -1.17
LIG3-211ENST00000588713 TOP2BQ02880 1626 aa7.76□□□□□ -1.17
LIG3-211ENST00000588713 SOGA1O94964 1423 aa7.76□□□□□ -1.17
LIG3-211ENST00000588713 APLP2Q06481 763 aa7.74□□□□□ -1.17
LIG3-211ENST00000588713 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.72□□□□□ -1.17
LIG3-211ENST00000588713 HNRNPUL2Q1KMD3 747 aaKnown RBP7.72□□□□□ -1.17
LIG3-211ENST00000588713 COL17A1Q9UMD9 1497 aaPredicted RBP7.71□□□□□ -1.18
LIG3-211ENST00000588713 ZNF219Q9P2Y4 722 aaPredicted RBP7.7□□□□□ -1.18
LIG3-211ENST00000588713 WDR97A6NE52 1622 aa7.7□□□□□ -1.18
LIG3-211ENST00000588713 PCF11O94913 1555 aaKnown RBP7.69□□□□□ -1.18
LIG3-211ENST00000588713 PRG4Q92954 1404 aaPredicted RBP7.69□□□□□ -1.18
LIG3-211ENST00000588713 ABCB7O75027 752 aa7.68□□□□□ -1.18
LIG3-211ENST00000588713 HSPA2P54652 639 aa7.68□□□□□ -1.18
LIG3-211ENST00000588713 GRIN2AQ12879 1464 aa7.67□□□□□ -1.18
LIG3-211ENST00000588713 FGD5Q6ZNL6 1462 aa7.67□□□□□ -1.18
LIG3-211ENST00000588713 SHROOM2Q13796 1616 aa7.67□□□□□ -1.18
LIG3-211ENST00000588713 ADCY10Q96PN6 1610 aa7.67□□□□□ -1.18
LIG3-211ENST00000588713 PBRM1Q86U86 1689 aa7.67□□□□□ -1.18
LIG3-211ENST00000588713 SAMD1Q6SPF0 538 aaPredicted RBP7.66□□□□□ -1.18
LIG3-211ENST00000588713 PTPRMP28827 1452 aa7.66□□□□□ -1.18
LIG3-211ENST00000588713 TOP2AP11388 1531 aaKnown RBP7.66□□□□□ -1.18
LIG3-211ENST00000588713 PPRC1Q5VV67 1664 aaKnown RBP7.66□□□□□ -1.18
LIG3-211ENST00000588713 NUP160Q12769 1436 aa7.65□□□□□ -1.18
LIG3-211ENST00000588713 KIF21BO75037 1637 aa7.62□□□□□ -1.19
LIG3-211ENST00000588713 JPH4Q96JJ6 628 aa7.6□□□□□ -1.19
LIG3-211ENST00000588713 CCDC88BA6NC98 1476 aa7.6□□□□□ -1.19
LIG3-211ENST00000588713 TTBK1Q5TCY1 1321 aaPredicted RBP7.59□□□□□ -1.19
LIG3-211ENST00000588713 POTEHQ6S545 545 aa7.59□□□□□ -1.19
LIG3-211ENST00000588713 TEX14Q8IWB6 1497 aa7.58□□□□□ -1.2
LIG3-211ENST00000588713 ASXL2Q76L83 1435 aa7.57□□□□□ -1.2
LIG3-211ENST00000588713 GLI2P10070 1586 aa7.57□□□□□ -1.2
LIG3-211ENST00000588713 ADAMTS12P58397 1594 aa7.57□□□□□ -1.2
LIG3-211ENST00000588713 MYCNP04198 464 aaPredicted RBP7.56□□□□□ -1.2
LIG3-211ENST00000588713 ABCA5Q8WWZ7 1642 aa7.54□□□□□ -1.2
LIG3-211ENST00000588713 PLB1Q6P1J6 1458 aa7.54□□□□□ -1.2
LIG3-211ENST00000588713 MED1Q15648 1581 aaPredicted RBP7.54□□□□□ -1.2
LIG3-211ENST00000588713 ADAMTSL3P82987 1691 aa7.54□□□□□ -1.2
LIG3-211ENST00000588713 CUX1P39880 1505 aa7.52□□□□□ -1.2
LIG3-211ENST00000588713 MADDQ8WXG6 1647 aa7.52□□□□□ -1.2
LIG3-211ENST00000588713 SLC4A1APQ9BWU0 796 aaKnown RBP7.52□□□□□ -1.21
LIG3-211ENST00000588713 MAP3K4Q9Y6R4 1608 aa7.52□□□□□ -1.21
LIG3-211ENST00000588713 ARID4BQ4LE39 1312 aaPredicted RBP7.52□□□□□ -1.21
LIG3-211ENST00000588713 FHAD1B1AJZ9 1412 aa7.51□□□□□ -1.21
LIG3-211ENST00000588713 POLA2Q14181 598 aa7.5□□□□□ -1.21
LIG3-211ENST00000588713 EPRSP07814 1512 aaKnown RBP7.5□□□□□ -1.21
LIG3-211ENST00000588713 ABCC2Q92887 1545 aa7.5□□□□□ -1.21
LIG3-211ENST00000588713 ABCA10Q8WWZ4 1543 aa7.49□□□□□ -1.21
LIG3-211ENST00000588713 RIMS1Q86UR5 1692 aaKnown RBP7.47□□□□□ -1.21
LIG3-211ENST00000588713 RUSC2Q8N2Y8 1516 aa7.47□□□□□ -1.21
LIG3-211ENST00000588713 UBAP1LF5GYI3 381 aa7.47□□□□□ -1.21
LIG3-211ENST00000588713 RBM42Q9BTD8 480 aaKnown RBP7.47□□□□□ -1.21
LIG3-211ENST00000588713 CUL7Q14999 1698 aa7.47□□□□□ -1.21
LIG3-211ENST00000588713 KIAA0586Q9BVV6 1533 aa7.47□□□□□ -1.21
LIG3-211ENST00000588713 PTPRGP23470 1445 aa7.46□□□□□ -1.21
LIG3-211ENST00000588713 BCORL1Q5H9F3 1711 aa7.46□□□□□ -1.22
LIG3-211ENST00000588713 FOXD4L1Q9NU39 408 aa7.45□□□□□ -1.22
LIG3-211ENST00000588713 YEATS2Q9ULM3 1422 aa7.44□□□□□ -1.22
LIG3-211ENST00000588713 HSPA1LP34931 641 aa7.43□□□□□ -1.22
LIG3-211ENST00000588713 CD109Q6YHK3 1445 aa7.42□□□□□ -1.22
LIG3-211ENST00000588713 IQSEC2Q5JU85 1478 aa7.42□□□□□ -1.22
LIG3-211ENST00000588713 LTBP4Q8N2S1 1624 aa7.41□□□□□ -1.22
LIG3-211ENST00000588713 CFAP43Q8NDM7 1665 aa7.39□□□□□ -1.23
LIG3-211ENST00000588713 PIP4K2BP78356 416 aa7.39□□□□□ -1.23
LIG3-211ENST00000588713 STRCQ7RTU9 1775 aa7.38□□□□□ -1.23
LIG3-211ENST00000588713 MAGI3Q5TCQ9 1506 aa7.38□□□□□ -1.23
LIG3-211ENST00000588713 KCNH8Q96L42 1107 aa7.38□□□□□ -1.23
LIG3-211ENST00000588713 ATF5Q9Y2D1 282 aaPredicted RBP7.38□□□□□ -1.23
LIG3-211ENST00000588713 ERICH3Q5RHP9 1530 aa7.37□□□□□ -1.23
LIG3-211ENST00000588713 UACAQ9BZF9 1416 aa7.37□□□□□ -1.23
LIG3-211ENST00000588713 TNIKQ9UKE5 1360 aa7.37□□□□□ -1.23
LIG3-211ENST00000588713 RAPGEF3O95398 923 aa7.37□□□□□ -1.23
LIG3-211ENST00000588713 MLECQ14165 292 aa7.37□□□□□ -1.23
LIG3-211ENST00000588713 UHRF1BP1LA0JNW5 1464 aa7.36□□□□□ -1.23
LIG3-211ENST00000588713 WDR7Q9Y4E6 1490 aa7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms