RNA–Protein interactions for RNA: ENST00000585799.5

SMARCA4-208, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 2

Gene SMARCA4, Length 3,842 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-208ENST00000585799 RRP7BPQ9NSQ0 103 aa17.93■□□□□ 0.46
SMARCA4-208ENST00000585799 POLA1P09884 1462 aaPredicted RBP17.92■□□□□ 0.46
SMARCA4-208ENST00000585799 TOPBP1Q92547 1522 aa17.92■□□□□ 0.46
SMARCA4-208ENST00000585799 CNGB1Q14028 1251 aaPredicted RBP17.91■□□□□ 0.46
SMARCA4-208ENST00000585799 FHAD1B1AJZ9 1412 aa17.91■□□□□ 0.46
SMARCA4-208ENST00000585799 ARHGAP35Q9NRY4 1499 aa17.91■□□□□ 0.46
SMARCA4-208ENST00000585799 HIRIP3Q9BW71 556 aaPredicted RBP17.9■□□□□ 0.46
SMARCA4-208ENST00000585799 SIN3AQ96ST3 1273 aa17.9■□□□□ 0.46
SMARCA4-208ENST00000585799 AQRO60306 1485 aaKnown RBP eCLIP17.88■□□□□ 0.451e-7■■■■□ 26.1
SMARCA4-208ENST00000585799 ERICH3Q5RHP9 1530 aa17.88■□□□□ 0.45
SMARCA4-208ENST00000585799 POLR3GLQ9BT43 218 aa17.87■□□□□ 0.45
SMARCA4-208ENST00000585799 GAPVD1Q14C86 1478 aa17.86■□□□□ 0.45
SMARCA4-208ENST00000585799 MIER1Q8N108 512 aa17.86■□□□□ 0.45
SMARCA4-208ENST00000585799 BIVM-ERCC5R4GMW8 1640 aa17.86■□□□□ 0.45
SMARCA4-208ENST00000585799 CDK11AQ9UQ88 783 aaPredicted RBP17.84■□□□□ 0.45
SMARCA4-208ENST00000585799 MYT1LQ9UL68 1186 aa17.83■□□□□ 0.45
SMARCA4-208ENST00000585799 ZNF326Q5BKZ1 582 aaKnown RBP17.8■□□□□ 0.44
SMARCA4-208ENST00000585799 RAB3GAP2Q9H2M9 1393 aa17.78■□□□□ 0.44
SMARCA4-208ENST00000585799 DNMBPQ6XZF7 1577 aa17.77■□□□□ 0.44
SMARCA4-208ENST00000585799 GTF3C3Q9Y5Q9 886 aa17.76■□□□□ 0.43
SMARCA4-208ENST00000585799 URB2Q14146 1524 aaKnown RBP17.76■□□□□ 0.43
SMARCA4-208ENST00000585799 DDX10Q13206 875 aaKnown RBP17.75■□□□□ 0.43
SMARCA4-208ENST00000585799 FMN1Q68DA7 1419 aa17.74■□□□□ 0.43
SMARCA4-208ENST00000585799 PHLDB1Q86UU1 1377 aa17.74■□□□□ 0.43
SMARCA4-208ENST00000585799 ACIN1Q9UKV3 1341 aaKnown RBP17.74■□□□□ 0.43
SMARCA4-208ENST00000585799 TONSLQ96HA7 1378 aa17.73■□□□□ 0.43
SMARCA4-208ENST00000585799 DHX57Q6P158 1386 aaKnown RBP17.72■□□□□ 0.43
SMARCA4-208ENST00000585799 ABCA10Q8WWZ4 1543 aa17.7■□□□□ 0.42
SMARCA4-208ENST00000585799 SETD5Q9C0A6 1442 aa17.69■□□□□ 0.42
SMARCA4-208ENST00000585799 KCNH8Q96L42 1107 aa17.67■□□□□ 0.42
SMARCA4-208ENST00000585799 CFDP1Q9UEE9 299 aaPredicted RBP17.67■□□□□ 0.42
SMARCA4-208ENST00000585799 LAMC3Q9Y6N6 1575 aa17.66■□□□□ 0.42
SMARCA4-208ENST00000585799 SCAF1Q9H7N4 1312 aaKnown RBP17.65■□□□□ 0.42
SMARCA4-208ENST00000585799 PLEKHD1A6NEE1 506 aa17.65■□□□□ 0.42
SMARCA4-208ENST00000585799 LRRC9Q6ZRR7 1453 aa17.65■□□□□ 0.42
SMARCA4-208ENST00000585799 FOXD1Q16676 465 aa17.64■□□□□ 0.41
SMARCA4-208ENST00000585799 JPH4Q96JJ6 628 aa17.63■□□□□ 0.41
SMARCA4-208ENST00000585799 CLSPNQ9HAW4 1339 aa17.61■□□□□ 0.41
SMARCA4-208ENST00000585799 MRC2Q9UBG0 1479 aa17.6■□□□□ 0.41
SMARCA4-208ENST00000585799 SLC4A1APQ9BWU0 796 aaKnown RBP17.6■□□□□ 0.41
SMARCA4-208ENST00000585799 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.57■□□□□ 0.42e-8■■■□□ 18.2
SMARCA4-208ENST00000585799 RRBP1Q9P2E9 1410 aaKnown RBP17.57■□□□□ 0.4
SMARCA4-208ENST00000585799 ZNF608Q9ULD9 1512 aaPredicted RBP17.56■□□□□ 0.4
SMARCA4-208ENST00000585799 CASKIN1Q8WXD9 1431 aa17.56■□□□□ 0.4
SMARCA4-208ENST00000585799 ANP32CO43423 234 aa17.55■□□□□ 0.4
SMARCA4-208ENST00000585799 TSPY4P0CV99 314 aa17.55■□□□□ 0.4
SMARCA4-208ENST00000585799 TSPY10P0CW01 314 aa17.55■□□□□ 0.4
SMARCA4-208ENST00000585799 GRIN2BQ13224 1484 aa17.55■□□□□ 0.4
SMARCA4-208ENST00000585799 ZNF644Q9H582 1327 aaPredicted RBP17.54■□□□□ 0.4
SMARCA4-208ENST00000585799 TIAM1Q13009 1591 aa17.53■□□□□ 0.4
SMARCA4-208ENST00000585799 PCF11O94913 1555 aaKnown RBP17.5■□□□□ 0.39
SMARCA4-208ENST00000585799 KDM2AQ9Y2K7 1162 aa17.5■□□□□ 0.39
SMARCA4-208ENST00000585799 FGD6Q6ZV73 1430 aa17.49■□□□□ 0.39
SMARCA4-208ENST00000585799 SNAPC4Q5SXM2 1469 aa17.48■□□□□ 0.39
SMARCA4-208ENST00000585799 FYCO1Q9BQS8 1478 aa17.47■□□□□ 0.39
SMARCA4-208ENST00000585799 CARMIL2Q6F5E8 1435 aa17.47■□□□□ 0.39
SMARCA4-208ENST00000585799 NCOA2Q15596 1464 aa17.45■□□□□ 0.38
SMARCA4-208ENST00000585799 BCANQ96GW7 911 aa17.45■□□□□ 0.38
SMARCA4-208ENST00000585799 IFT140Q96RY7 1462 aa17.45■□□□□ 0.38
SMARCA4-208ENST00000585799 KIF21AQ7Z4S6 1674 aa17.43■□□□□ 0.38
SMARCA4-208ENST00000585799 NEFLP07196 543 aa17.43■□□□□ 0.38
SMARCA4-208ENST00000585799 EFCAB5A4FU69 1503 aa17.43■□□□□ 0.38
SMARCA4-208ENST00000585799 MPHOSPH9Q99550 1183 aa17.42■□□□□ 0.38
SMARCA4-208ENST00000585799 PPP1R15AO75807 674 aaPredicted RBP17.42■□□□□ 0.38
SMARCA4-208ENST00000585799 MYOM3Q5VTT5 1437 aa17.41■□□□□ 0.38
SMARCA4-208ENST00000585799 PELP1Q8IZL8 1130 aaKnown RBP17.41■□□□□ 0.38
SMARCA4-208ENST00000585799 CUL7Q14999 1698 aa17.4■□□□□ 0.38
SMARCA4-208ENST00000585799 HNRNPMP52272 730 aaKnown RBP eCLIP17.4■□□□□ 0.385e-6■■□□□ 11.8
SMARCA4-208ENST00000585799 PRDM2Q13029 1718 aa17.39■□□□□ 0.37
SMARCA4-208ENST00000585799 CDK13Q14004 1512 aaKnown RBP17.39■□□□□ 0.37
SMARCA4-208ENST00000585799 RGL3Q3MIN7 710 aa17.38■□□□□ 0.37
SMARCA4-208ENST00000585799 CCDC18Q5T9S5 1454 aa17.37■□□□□ 0.37
SMARCA4-208ENST00000585799 EIF4G2P78344 907 aaKnown RBP eCLIP17.36■□□□□ 0.37
SMARCA4-208ENST00000585799 PKD2Q13563 968 aa17.33■□□□□ 0.37
SMARCA4-208ENST00000585799 PTPRGP23470 1445 aa17.33■□□□□ 0.36
SMARCA4-208ENST00000585799 L3MBTL2Q969R5 705 aa17.33■□□□□ 0.36
SMARCA4-208ENST00000585799 PRG4Q92954 1404 aaPredicted RBP17.32■□□□□ 0.36
SMARCA4-208ENST00000585799 IQGAP2Q13576 1575 aa17.32■□□□□ 0.36
SMARCA4-208ENST00000585799 SENP3-EIF4A1A0A087X0R7 540 aa17.31■□□□□ 0.36
SMARCA4-208ENST00000585799 NPM1P06748 294 aaKnown RBP eCLIP17.31■□□□□ 0.36
SMARCA4-208ENST00000585799 KIAA0586Q9BVV6 1533 aa17.29■□□□□ 0.36
SMARCA4-208ENST00000585799 EPRSP07814 1512 aaKnown RBP17.29■□□□□ 0.36
SMARCA4-208ENST00000585799 HSPA5P11021 654 aaKnown RBP17.28■□□□□ 0.36
SMARCA4-208ENST00000585799 TIMELESSQ9UNS1 1208 aa17.28■□□□□ 0.36
SMARCA4-208ENST00000585799 FAM9BQ8IZU0 186 aa17.28■□□□□ 0.36
SMARCA4-208ENST00000585799 GRIN2AQ12879 1464 aa17.27■□□□□ 0.36
SMARCA4-208ENST00000585799 PLB1Q6P1J6 1458 aa17.27■□□□□ 0.35
SMARCA4-208ENST00000585799 HNRNPUQ00839 825 aaKnown RBP eCLIP17.26■□□□□ 0.35
SMARCA4-208ENST00000585799 SENP3Q9H4L4 574 aaPredicted RBP17.26■□□□□ 0.35
SMARCA4-208ENST00000585799 MAP3K1Q13233 1512 aa17.26■□□□□ 0.35
SMARCA4-208ENST00000585799 NUP155O75694 1391 aa17.24■□□□□ 0.35
SMARCA4-208ENST00000585799 CHGAP10645 457 aaKnown RBP17.24■□□□□ 0.35
SMARCA4-208ENST00000585799 PTPRKQ15262 1439 aa17.24■□□□□ 0.35
SMARCA4-208ENST00000585799 ABCA5Q8WWZ7 1642 aa17.21■□□□□ 0.35
SMARCA4-208ENST00000585799 EHBP1L1Q8N3D4 1523 aa17.21■□□□□ 0.35
SMARCA4-208ENST00000585799 UACAQ9BZF9 1416 aa17.21■□□□□ 0.35
SMARCA4-208ENST00000585799 DCAF11Q8TEB1 546 aa17.21■□□□□ 0.35
SMARCA4-208ENST00000585799 ANKRD30AQ9BXX3 1397 aa17.2■□□□□ 0.34
SMARCA4-208ENST00000585799 CTTNBP2Q8WZ74 1663 aa17.2■□□□□ 0.34
SMARCA4-208ENST00000585799 NAIPQ13075 1403 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms