RNA–Protein interactions for RNA: ENST00000584582.5

TOP3A-217, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 5

Gene TOP3A, Length 3,661 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-217ENST00000584582 FANCD2Q9BXW9 1451 aa16.13■□□□□ 0.17
TOP3A-217ENST00000584582 FGD5Q6ZNL6 1462 aa16.13■□□□□ 0.17
TOP3A-217ENST00000584582 ARAP1Q96P48 1450 aa16.12■□□□□ 0.17
TOP3A-217ENST00000584582 CFTRP13569 1480 aa16.11■□□□□ 0.17
TOP3A-217ENST00000584582 CHMP7Q8WUX9 453 aaPredicted RBP16.07■□□□□ 0.16
TOP3A-217ENST00000584582 MYT1LQ9UL68 1186 aa16.05■□□□□ 0.16
TOP3A-217ENST00000584582 PEG3Q9GZU2 1588 aa16.05■□□□□ 0.16
TOP3A-217ENST00000584582 TOP2BQ02880 1626 aa16.05■□□□□ 0.16
TOP3A-217ENST00000584582 RAB3GAP2Q9H2M9 1393 aa16.04■□□□□ 0.16
TOP3A-217ENST00000584582 PRXQ9BXM0 1461 aa16.03■□□□□ 0.16
TOP3A-217ENST00000584582 TONSLQ96HA7 1378 aa16.02■□□□□ 0.15
TOP3A-217ENST00000584582 CC2D2AQ9P2K1 1620 aa16.01■□□□□ 0.15
TOP3A-217ENST00000584582 PELP1Q8IZL8 1130 aaKnown RBP16.01■□□□□ 0.15
TOP3A-217ENST00000584582 DHX57Q6P158 1386 aaKnown RBP16■□□□□ 0.15
TOP3A-217ENST00000584582 FOXD1Q16676 465 aa16■□□□□ 0.15
TOP3A-217ENST00000584582 ARHGAP35Q9NRY4 1499 aa15.99■□□□□ 0.15
TOP3A-217ENST00000584582 SENP3-EIF4A1A0A087X0R7 540 aa15.97■□□□□ 0.15
TOP3A-217ENST00000584582 ANP32CO43423 234 aa15.96■□□□□ 0.15
TOP3A-217ENST00000584582 HMGXB3Q12766 1538 aa15.96■□□□□ 0.15
TOP3A-217ENST00000584582 NEFLP07196 543 aa15.96■□□□□ 0.15
TOP3A-217ENST00000584582 FHAD1B1AJZ9 1412 aa15.96■□□□□ 0.14
TOP3A-217ENST00000584582 KCNH8Q96L42 1107 aa15.95■□□□□ 0.14
TOP3A-217ENST00000584582 PHLDB1Q86UU1 1377 aa15.94■□□□□ 0.14
TOP3A-217ENST00000584582 PDS5BQ9NTI5 1447 aa15.93■□□□□ 0.14
TOP3A-217ENST00000584582 CDK11AQ9UQ88 783 aaPredicted RBP15.91■□□□□ 0.14
TOP3A-217ENST00000584582 SETD5Q9C0A6 1442 aa15.91■□□□□ 0.14
TOP3A-217ENST00000584582 AQRO60306 1485 aaKnown RBP eCLIP15.89■□□□□ 0.131e-6■■■■□ 26.1
TOP3A-217ENST00000584582 ERCC6Q03468 1493 aa15.89■□□□□ 0.13
TOP3A-217ENST00000584582 POLA1P09884 1462 aaPredicted RBP15.87■□□□□ 0.13
TOP3A-217ENST00000584582 SLC4A1APQ9BWU0 796 aaKnown RBP15.87■□□□□ 0.13
TOP3A-217ENST00000584582 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.86■□□□□ 0.136e-6■□□□□ 8.3
TOP3A-217ENST00000584582 KDM2AQ9Y2K7 1162 aa15.86■□□□□ 0.13
TOP3A-217ENST00000584582 ERICH3Q5RHP9 1530 aa15.84■□□□□ 0.13
TOP3A-217ENST00000584582 CFDP1Q9UEE9 299 aaPredicted RBP15.83■□□□□ 0.13
TOP3A-217ENST00000584582 TOPBP1Q92547 1522 aa15.83■□□□□ 0.12
TOP3A-217ENST00000584582 CLSPNQ9HAW4 1339 aa15.83■□□□□ 0.12
TOP3A-217ENST00000584582 GAPVD1Q14C86 1478 aa15.82■□□□□ 0.12
TOP3A-217ENST00000584582 FKBP8Q14318 412 aa15.8■□□□□ 0.12
TOP3A-217ENST00000584582 FAM9BQ8IZU0 186 aa15.8■□□□□ 0.12
TOP3A-217ENST00000584582 FMN1Q68DA7 1419 aa15.79■□□□□ 0.12
TOP3A-217ENST00000584582 IRX6P78412 446 aaPredicted RBP15.79■□□□□ 0.12
TOP3A-217ENST00000584582 HNRNPUQ00839 825 aaKnown RBP eCLIP15.79■□□□□ 0.12
TOP3A-217ENST00000584582 ZNF644Q9H582 1327 aaPredicted RBP15.78■□□□□ 0.12
TOP3A-217ENST00000584582 LRRC9Q6ZRR7 1453 aa15.78■□□□□ 0.12
TOP3A-217ENST00000584582 PLEKHD1A6NEE1 506 aa15.76■□□□□ 0.11
TOP3A-217ENST00000584582 BIVM-ERCC5R4GMW8 1640 aa15.74■□□□□ 0.11
TOP3A-217ENST00000584582 PPP1R15AO75807 674 aaPredicted RBP15.74■□□□□ 0.11
TOP3A-217ENST00000584582 RGL3Q3MIN7 710 aa15.74■□□□□ 0.11
TOP3A-217ENST00000584582 TSPY4P0CV99 314 aa15.73■□□□□ 0.11
TOP3A-217ENST00000584582 TSPY10P0CW01 314 aa15.73■□□□□ 0.11
TOP3A-217ENST00000584582 SENP3Q9H4L4 574 aaPredicted RBP15.72■□□□□ 0.11
TOP3A-217ENST00000584582 RRBP1Q9P2E9 1410 aaKnown RBP15.72■□□□□ 0.11
TOP3A-217ENST00000584582 SALL2Q9Y467 1007 aaPredicted RBP15.71■□□□□ 0.11
TOP3A-217ENST00000584582 EIF4G2P78344 907 aaKnown RBP eCLIP15.7■□□□□ 0.1
TOP3A-217ENST00000584582 MPHOSPH9Q99550 1183 aa15.69■□□□□ 0.1
TOP3A-217ENST00000584582 JPH4Q96JJ6 628 aa15.69■□□□□ 0.1
TOP3A-217ENST00000584582 URB2Q14146 1524 aaKnown RBP15.68■□□□□ 0.1
TOP3A-217ENST00000584582 L3MBTL2Q969R5 705 aa15.66■□□□□ 0.1
TOP3A-217ENST00000584582 HSPA5P11021 654 aaKnown RBP15.66■□□□□ 0.1
TOP3A-217ENST00000584582 FGD6Q6ZV73 1430 aa15.65■□□□□ 0.1
TOP3A-217ENST00000584582 DNMBPQ6XZF7 1577 aa15.64■□□□□ 0.09
TOP3A-217ENST00000584582 MRS2Q9HD23 443 aa15.64■□□□□ 0.09
TOP3A-217ENST00000584582 TIAM1Q13009 1591 aa15.63■□□□□ 0.09
TOP3A-217ENST00000584582 ABCA10Q8WWZ4 1543 aa15.62■□□□□ 0.09
TOP3A-217ENST00000584582 HNRNPMP52272 730 aaKnown RBP eCLIP15.62■□□□□ 0.09
TOP3A-217ENST00000584582 CASKIN1Q8WXD9 1431 aa15.62■□□□□ 0.09
TOP3A-217ENST00000584582 PKD2Q13563 968 aa15.61■□□□□ 0.09
TOP3A-217ENST00000584582 SUPT16HQ9Y5B9 1047 aaKnown RBP15.61■□□□□ 0.09
TOP3A-217ENST00000584582 PCF11O94913 1555 aaKnown RBP15.6■□□□□ 0.09
TOP3A-217ENST00000584582 CCDC18Q5T9S5 1454 aa15.59■□□□□ 0.09
TOP3A-217ENST00000584582 NCOA2Q15596 1464 aa15.59■□□□□ 0.09
TOP3A-217ENST00000584582 ZNF608Q9ULD9 1512 aaPredicted RBP15.56■□□□□ 0.08
TOP3A-217ENST00000584582 CHGAP10645 457 aaKnown RBP15.55■□□□□ 0.08
TOP3A-217ENST00000584582 MYOM3Q5VTT5 1437 aa15.55■□□□□ 0.08
TOP3A-217ENST00000584582 DCAF11Q8TEB1 546 aa15.54■□□□□ 0.08
TOP3A-217ENST00000584582 FYCO1Q9BQS8 1478 aa15.53■□□□□ 0.08
TOP3A-217ENST00000584582 CDK13Q14004 1512 aaKnown RBP15.53■□□□□ 0.08
TOP3A-217ENST00000584582 CARD11Q9BXL7 1154 aa15.52■□□□□ 0.08
TOP3A-217ENST00000584582 TIMELESSQ9UNS1 1208 aa15.51■□□□□ 0.07
TOP3A-217ENST00000584582 WDR97A6NE52 1622 aa15.5■□□□□ 0.07
TOP3A-217ENST00000584582 PTPRKQ15262 1439 aa15.49■□□□□ 0.07
TOP3A-217ENST00000584582 ERICH6Q7L0X2 663 aa15.49■□□□□ 0.07
TOP3A-217ENST00000584582 NUP155O75694 1391 aa15.49■□□□□ 0.07
TOP3A-217ENST00000584582 GRIN2BQ13224 1484 aa15.48■□□□□ 0.07
TOP3A-217ENST00000584582 TMC1Q8TDI8 760 aa15.48■□□□□ 0.07
TOP3A-217ENST00000584582 PRG4Q92954 1404 aaPredicted RBP15.47■□□□□ 0.07
TOP3A-217ENST00000584582 PRDM2Q13029 1718 aa15.47■□□□□ 0.07
TOP3A-217ENST00000584582 CARMIL2Q6F5E8 1435 aa15.47■□□□□ 0.07
TOP3A-217ENST00000584582 SNAPC4Q5SXM2 1469 aa15.46■□□□□ 0.07
TOP3A-217ENST00000584582 LAMC3Q9Y6N6 1575 aa15.46■□□□□ 0.07
TOP3A-217ENST00000584582 MRC2Q9UBG0 1479 aa15.46■□□□□ 0.06
TOP3A-217ENST00000584582 UACAQ9BZF9 1416 aa15.43■□□□□ 0.06
TOP3A-217ENST00000584582 NAIPQ13075 1403 aa15.42■□□□□ 0.06
TOP3A-217ENST00000584582 EFCAB5A4FU69 1503 aa15.42■□□□□ 0.06
TOP3A-217ENST00000584582 NBPF8Q3BBV2 869 aa15.41■□□□□ 0.06
TOP3A-217ENST00000584582 WASHC2AQ641Q2 1341 aa15.39■□□□□ 0.05
TOP3A-217ENST00000584582 MAPKBP1O60336 1514 aa15.39■□□□□ 0.05
TOP3A-217ENST00000584582 PLB1Q6P1J6 1458 aa15.38■□□□□ 0.05
TOP3A-217ENST00000584582 CCDC184Q52MB2 194 aa15.38■□□□□ 0.05
TOP3A-217ENST00000584582 EPRSP07814 1512 aaKnown RBP15.38■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms