RNA–Protein interactions for RNA: ENST00000583800.1

SMCHD1-210, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 865 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-210ENST00000583800 AQRO60306 1485 aaKnown RBP eCLIP14.44□□□□□ -0.12e-9■■■■■ 39.4
SMCHD1-210ENST00000583800 POLA1P09884 1462 aaPredicted RBP14.44□□□□□ -0.1
SMCHD1-210ENST00000583800 SAMD1Q6SPF0 538 aaPredicted RBP14.43□□□□□ -0.1
SMCHD1-210ENST00000583800 RAD54L2Q9Y4B4 1467 aa14.39□□□□□ -0.11
SMCHD1-210ENST00000583800 FGD5Q6ZNL6 1462 aa14.35□□□□□ -0.11
SMCHD1-210ENST00000583800 ARAP1Q96P48 1450 aa14.35□□□□□ -0.11
SMCHD1-210ENST00000583800 FBLN2P98095 1184 aa14.34□□□□□ -0.11
SMCHD1-210ENST00000583800 TDRD9Q8NDG6 1382 aaKnown RBP14.34□□□□□ -0.11
SMCHD1-210ENST00000583800 SOGA1O94964 1423 aa14.33□□□□□ -0.11
SMCHD1-210ENST00000583800 CYB5RLQ6IPT4 315 aa14.33□□□□□ -0.12
SMCHD1-210ENST00000583800 WDR97A6NE52 1622 aa14.33□□□□□ -0.12
SMCHD1-210ENST00000583800 SNAPC4Q5SXM2 1469 aa14.32□□□□□ -0.12
SMCHD1-210ENST00000583800 CUX1P39880 1505 aa14.32□□□□□ -0.12
SMCHD1-210ENST00000583800 RBM42Q9BTD8 480 aaKnown RBP14.32□□□□□ -0.12
SMCHD1-210ENST00000583800 CLASP1Q7Z460 1538 aa14.29□□□□□ -0.12
SMCHD1-210ENST00000583800 PBRM1Q86U86 1689 aa14.28□□□□□ -0.12
SMCHD1-210ENST00000583800 SYNJ1O43426 1573 aa14.26□□□□□ -0.13
SMCHD1-210ENST00000583800 MAGI1Q96QZ7 1491 aaPredicted RBP14.25□□□□□ -0.13
SMCHD1-210ENST00000583800 GRIN2BQ13224 1484 aa14.24□□□□□ -0.13
SMCHD1-210ENST00000583800 SYNJ2O15056 1496 aa14.21□□□□□ -0.13
SMCHD1-210ENST00000583800 CHMP7Q8WUX9 453 aaPredicted RBP14.21□□□□□ -0.13
SMCHD1-210ENST00000583800 ABCA5Q8WWZ7 1642 aa14.19□□□□□ -0.14
SMCHD1-210ENST00000583800 POLA2Q14181 598 aa14.19□□□□□ -0.14
SMCHD1-210ENST00000583800 GAPVD1Q14C86 1478 aa14.18□□□□□ -0.14
SMCHD1-210ENST00000583800 CHRDL2Q6WN34 429 aa14.18□□□□□ -0.14
SMCHD1-210ENST00000583800 ABCA10Q8WWZ4 1543 aa14.15□□□□□ -0.14
SMCHD1-210ENST00000583800 MYCNP04198 464 aaPredicted RBP14.15□□□□□ -0.14
SMCHD1-210ENST00000583800 SUPT5HO00267 1087 aaKnown RBP14.11□□□□□ -0.15
SMCHD1-210ENST00000583800 BIVM-ERCC5R4GMW8 1640 aa14.1□□□□□ -0.15
SMCHD1-210ENST00000583800 ADAMTS12P58397 1594 aa14.09□□□□□ -0.15
SMCHD1-210ENST00000583800 CSRNP3Q8WYN3 585 aa14.08□□□□□ -0.16
SMCHD1-210ENST00000583800 ERCC6L2Q5T890 1561 aa14.08□□□□□ -0.16
SMCHD1-210ENST00000583800 GRIN2AQ12879 1464 aa14.07□□□□□ -0.16
SMCHD1-210ENST00000583800 TOP2BQ02880 1626 aa14.07□□□□□ -0.16
SMCHD1-210ENST00000583800 CEP170Q5SW79 1584 aa14.06□□□□□ -0.16
SMCHD1-210ENST00000583800 SLC4A1APQ9BWU0 796 aaKnown RBP14.05□□□□□ -0.16
SMCHD1-210ENST00000583800 WRNQ14191 1432 aaPredicted RBP eCLIP14.05□□□□□ -0.16
SMCHD1-210ENST00000583800 NUP160Q12769 1436 aa14.02□□□□□ -0.16
SMCHD1-210ENST00000583800 SHROOM2Q13796 1616 aa14.01□□□□□ -0.17
SMCHD1-210ENST00000583800 FHAD1B1AJZ9 1412 aa13.98□□□□□ -0.17
SMCHD1-210ENST00000583800 ERICH3Q5RHP9 1530 aa13.98□□□□□ -0.17
SMCHD1-210ENST00000583800 KIF13AQ9H1H9 1805 aa13.92□□□□□ -0.18
SMCHD1-210ENST00000583800 AKT1S1Q96B36 256 aa13.92□□□□□ -0.18
SMCHD1-210ENST00000583800 RUSC2Q8N2Y8 1516 aa13.9□□□□□ -0.18
SMCHD1-210ENST00000583800 ATF5Q9Y2D1 282 aaPredicted RBP13.89□□□□□ -0.19
SMCHD1-210ENST00000583800 PRG4Q92954 1404 aaPredicted RBP13.89□□□□□ -0.19
SMCHD1-210ENST00000583800 SP7Q8TDD2 431 aaPredicted RBP13.86□□□□□ -0.19
SMCHD1-210ENST00000583800 ZBTB12Q9Y330 459 aaPredicted RBP13.85□□□□□ -0.19
SMCHD1-210ENST00000583800 JPH4Q96JJ6 628 aa13.83□□□□□ -0.2
SMCHD1-210ENST00000583800 ADCY10Q96PN6 1610 aa13.8□□□□□ -0.2
SMCHD1-210ENST00000583800 CUL7Q14999 1698 aa13.8□□□□□ -0.2
SMCHD1-210ENST00000583800 REM2Q8IYK8 340 aaPredicted RBP13.79□□□□□ -0.2
SMCHD1-210ENST00000583800 FOXD4L1Q9NU39 408 aa13.79□□□□□ -0.2
SMCHD1-210ENST00000583800 MAPKBP1O60336 1514 aa13.77□□□□□ -0.21
SMCHD1-210ENST00000583800 DIP2BQ9P265 1576 aa13.77□□□□□ -0.21
SMCHD1-210ENST00000583800 PIP4P2Q8N4L2 257 aa13.76□□□□□ -0.21
SMCHD1-210ENST00000583800 KIAA0586Q9BVV6 1533 aa13.75□□□□□ -0.21
SMCHD1-210ENST00000583800 ABCC10Q5T3U5 1492 aa13.75□□□□□ -0.21
SMCHD1-210ENST00000583800 KIF27Q86VH2 1401 aa13.74□□□□□ -0.21
SMCHD1-210ENST00000583800 IGF1RP08069 1367 aa13.73□□□□□ -0.21
SMCHD1-210ENST00000583800 TSPOAP1O95153 1857 aa13.73□□□□□ -0.21
SMCHD1-210ENST00000583800 FAM69CQ0P6D2 419 aa13.72□□□□□ -0.21
SMCHD1-210ENST00000583800 NPM1P06748 294 aaKnown RBP eCLIP13.71□□□□□ -0.21
SMCHD1-210ENST00000583800 KDM6BO15054 1643 aa13.68□□□□□ -0.22
SMCHD1-210ENST00000583800 CARMIL1Q5VZK9 1371 aa13.66□□□□□ -0.22
SMCHD1-210ENST00000583800 PITPNM1O00562 1244 aa13.65□□□□□ -0.22
SMCHD1-210ENST00000583800 IQGAP2Q13576 1575 aa13.65□□□□□ -0.22
SMCHD1-210ENST00000583800 TTBK1Q5TCY1 1321 aaPredicted RBP13.64□□□□□ -0.23
SMCHD1-210ENST00000583800 SLC24A1O60721 1099 aa13.63□□□□□ -0.23
SMCHD1-210ENST00000583800 PTPRGP23470 1445 aa13.63□□□□□ -0.23
SMCHD1-210ENST00000583800 HAX1O00165 279 aa13.62□□□□□ -0.23
SMCHD1-210ENST00000583800 FXR2P51116 673 aaKnown RBP eCLIP13.62□□□□□ -0.233e-9■■■□□ 14.8
SMCHD1-210ENST00000583800 ZBTB22O15209 634 aa13.61□□□□□ -0.23
SMCHD1-210ENST00000583800 CARMIL2Q6F5E8 1435 aa13.61□□□□□ -0.23
SMCHD1-210ENST00000583800 TNIKQ9UKE5 1360 aa13.6□□□□□ -0.23
SMCHD1-210ENST00000583800 ABCC2Q92887 1545 aa13.6□□□□□ -0.23
SMCHD1-210ENST00000583800 PPRC1Q5VV67 1664 aaKnown RBP13.6□□□□□ -0.23
SMCHD1-210ENST00000583800 DISP1Q96F81 1524 aa13.58□□□□□ -0.24
SMCHD1-210ENST00000583800 ASXL2Q76L83 1435 aa13.56□□□□□ -0.24
SMCHD1-210ENST00000583800 GLI2P10070 1586 aa13.56□□□□□ -0.24
SMCHD1-210ENST00000583800 UHRF1BP1LA0JNW5 1464 aa13.55□□□□□ -0.24
SMCHD1-210ENST00000583800 UACAQ9BZF9 1416 aa13.55□□□□□ -0.24
SMCHD1-210ENST00000583800 PLB1Q6P1J6 1458 aa13.55□□□□□ -0.24
SMCHD1-210ENST00000583800 KIAA0556O60303 1618 aa13.54□□□□□ -0.24
SMCHD1-210ENST00000583800 RAPGEF2Q9Y4G8 1499 aa13.54□□□□□ -0.24
SMCHD1-210ENST00000583800 UGGT2Q9NYU1 1516 aa13.54□□□□□ -0.24
SMCHD1-210ENST00000583800 ZCCHC11Q5TAX3 1644 aaKnown RBP13.53□□□□□ -0.24
SMCHD1-210ENST00000583800 CTTNBP2Q8WZ74 1663 aa13.53□□□□□ -0.24
SMCHD1-210ENST00000583800 KDM4FA0A1W2PPD8 638 aa13.52□□□□□ -0.25
SMCHD1-210ENST00000583800 MAP3K4Q9Y6R4 1608 aa13.51□□□□□ -0.25
SMCHD1-210ENST00000583800 KDM5BQ9UGL1 1544 aa13.5□□□□□ -0.25
SMCHD1-210ENST00000583800 EPRSP07814 1512 aaKnown RBP13.49□□□□□ -0.25
SMCHD1-210ENST00000583800 COL17A1Q9UMD9 1497 aaPredicted RBP13.45□□□□□ -0.26
SMCHD1-210ENST00000583800 EVX2Q03828 476 aa13.44□□□□□ -0.26
SMCHD1-210ENST00000583800 ADGRL1O94910 1474 aa13.43□□□□□ -0.26
SMCHD1-210ENST00000583800 TEX14Q8IWB6 1497 aa13.43□□□□□ -0.26
SMCHD1-210ENST00000583800 WDR7Q9Y4E6 1490 aa13.42□□□□□ -0.26
SMCHD1-210ENST00000583800 ATXN8OSP0DMR3 200 aa13.41□□□□□ -0.26
SMCHD1-210ENST00000583800 ABCA8O94911 1581 aa13.41□□□□□ -0.26
SMCHD1-210ENST00000583800 SPDYE2BA6NHP3 402 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms