RNA–Protein interactions for RNA: ENST00000582892.1

NF1-222, Transcript of neurofibromin 1, human

TSL 4

Gene NF1, Length 462 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NF1-222	ENST00000582892	CLASP1	Q7Z460	1538 aa		13.83	□□□□□ -0.2
NF1-222	ENST00000582892	CSRNP3	Q8WYN3	585 aa		13.82	□□□□□ -0.2
NF1-222	ENST00000582892	DNMBP	Q6XZF7	1577 aa		13.82	□□□□□ -0.2
NF1-222	ENST00000582892	CCDC88B	A6NC98	1476 aa		13.76	□□□□□ -0.21
NF1-222	ENST00000582892	POLA1	P09884	1462 aa	Predicted RBP	13.76	□□□□□ -0.21
NF1-222	ENST00000582892	RAD54L2	Q9Y4B4	1467 aa		13.75	□□□□□ -0.21
NF1-222	ENST00000582892	SNAPC4	Q5SXM2	1469 aa		13.74	□□□□□ -0.21
NF1-222	ENST00000582892	TDRD9	Q8NDG6	1382 aa	Known RBP	13.72	□□□□□ -0.21
NF1-222	ENST00000582892	ABCC8	Q09428	1581 aa		13.71	□□□□□ -0.21
NF1-222	ENST00000582892	SYNJ1	O43426	1573 aa		13.71	□□□□□ -0.22
NF1-222	ENST00000582892	GAPVD1	Q14C86	1478 aa		13.69	□□□□□ -0.22
NF1-222	ENST00000582892	ATXN8OS	P0DMR3	200 aa		13.69	□□□□□ -0.22
NF1-222	ENST00000582892	ERCC6L2	Q5T890	1561 aa		13.67	□□□□□ -0.22
NF1-222	ENST00000582892	CAPN15	O75808	1086 aa		13.67	□□□□□ -0.22
NF1-222	ENST00000582892	ILDR1	Q86SU0	546 aa	Predicted RBP	13.65	□□□□□ -0.22
NF1-222	ENST00000582892	ZNF219	Q9P2Y4	722 aa	Predicted RBP	13.65	□□□□□ -0.22
NF1-222	ENST00000582892	KIF13A	Q9H1H9	1805 aa		13.64	□□□□□ -0.23
NF1-222	ENST00000582892	CHMP7	Q8WUX9	453 aa	Predicted RBP	13.63	□□□□□ -0.23
NF1-222	ENST00000582892	SOGA1	O94964	1423 aa		13.62	□□□□□ -0.23
NF1-222	ENST00000582892	MAGI1	Q96QZ7	1491 aa	Predicted RBP	13.61	□□□□□ -0.23
NF1-222	ENST00000582892	SPINK5	Q9NQ38	1064 aa	Predicted RBP	13.6	□□□□□ -0.23
NF1-222	ENST00000582892	FGD5	Q6ZNL6	1462 aa		13.6	□□□□□ -0.23
NF1-222	ENST00000582892	PBRM1	Q86U86	1689 aa		13.59	□□□□□ -0.23
NF1-222	ENST00000582892	SYNJ2	O15056	1496 aa		13.59	□□□□□ -0.23
NF1-222	ENST00000582892	WDR97	A6NE52	1622 aa		13.58	□□□□□ -0.24
NF1-222	ENST00000582892	GRIN2B	Q13224	1484 aa		13.56	□□□□□ -0.24
NF1-222	ENST00000582892	CUX1	P39880	1505 aa		13.53	□□□□□ -0.24
NF1-222	ENST00000582892	CEP170	Q5SW79	1584 aa		13.5	□□□□□ -0.25
NF1-222	ENST00000582892	KDM4F	A0A1W2PPD8	638 aa		13.5	□□□□□ -0.25
NF1-222	ENST00000582892	ABCA5	Q8WWZ7	1642 aa		13.46	□□□□□ -0.25
NF1-222	ENST00000582892	SHROOM2	Q13796	1616 aa		13.43	□□□□□ -0.26
NF1-222	ENST00000582892	GRIN2A	Q12879	1464 aa		13.42	□□□□□ -0.26
NF1-222	ENST00000582892	ATF5	Q9Y2D1	282 aa	Predicted RBP	13.42	□□□□□ -0.26
NF1-222	ENST00000582892	TSPOAP1	O95153	1857 aa		13.4	□□□□□ -0.26
NF1-222	ENST00000582892	DSG3	P32926	999 aa		13.4	□□□□□ -0.26
NF1-222	ENST00000582892	ADAMTS12	P58397	1594 aa		13.4	□□□□□ -0.26
NF1-222	ENST00000582892	KDM6B	O15054	1643 aa		13.39	□□□□□ -0.27
NF1-222	ENST00000582892	DIP2B	Q9P265	1576 aa		13.39	□□□□□ -0.27
NF1-222	ENST00000582892	NUP160	Q12769	1436 aa		13.39	□□□□□ -0.27
NF1-222	ENST00000582892	FAM69C	Q0P6D2	419 aa		13.37	□□□□□ -0.27
NF1-222	ENST00000582892	ABCC10	Q5T3U5	1492 aa		13.36	□□□□□ -0.27
NF1-222	ENST00000582892	ABCA10	Q8WWZ4	1543 aa		13.36	□□□□□ -0.27
NF1-222	ENST00000582892	ADCY10	Q96PN6	1610 aa		13.31	□□□□□ -0.28
NF1-222	ENST00000582892	PRG4	Q92954	1404 aa	Predicted RBP	13.31	□□□□□ -0.28
NF1-222	ENST00000582892	ABCB7	O75027	752 aa		13.31	□□□□□ -0.28
NF1-222	ENST00000582892	MAPKBP1	O60336	1514 aa		13.3	□□□□□ -0.28
NF1-222	ENST00000582892	HECW2	Q9P2P5	1572 aa		13.3	□□□□□ -0.28
NF1-222	ENST00000582892	POLA2	Q14181	598 aa		13.3	□□□□□ -0.28
NF1-222	ENST00000582892	ADGRL1	O94910	1474 aa		13.27	□□□□□ -0.29
NF1-222	ENST00000582892	FHAD1	B1AJZ9	1412 aa		13.24	□□□□□ -0.29
NF1-222	ENST00000582892	ZBTB12	Q9Y330	459 aa	Predicted RBP	13.24	□□□□□ -0.29
NF1-222	ENST00000582892	RUSC2	Q8N2Y8	1516 aa		13.23	□□□□□ -0.29
NF1-222	ENST00000582892	PPRC1	Q5VV67	1664 aa	Known RBP	13.23	□□□□□ -0.29
NF1-222	ENST00000582892	JPH4	Q96JJ6	628 aa		13.19	□□□□□ -0.3
NF1-222	ENST00000582892	NPM1	P06748	294 aa	Known RBP eCLIP	13.17	□□□□□ -0.3
NF1-222	ENST00000582892	ERICH3	Q5RHP9	1530 aa		13.17	□□□□□ -0.3
NF1-222	ENST00000582892	WRN	Q14191	1432 aa	Predicted RBP eCLIP	13.16	□□□□□ -0.3
NF1-222	ENST00000582892	BIVM-ERCC5	R4GMW8	1640 aa		13.16	□□□□□ -0.3
NF1-222	ENST00000582892	COL17A1	Q9UMD9	1497 aa	Predicted RBP	13.15	□□□□□ -0.3
NF1-222	ENST00000582892	TOP2B	Q02880	1626 aa		13.13	□□□□□ -0.31
NF1-222	ENST00000582892	CUL7	Q14999	1698 aa		13.08	□□□□□ -0.32
NF1-222	ENST00000582892	FBXO41	Q8TF61	875 aa		13.07	□□□□□ -0.32
NF1-222	ENST00000582892	TTBK1	Q5TCY1	1321 aa	Predicted RBP	13.07	□□□□□ -0.32
NF1-222	ENST00000582892	ASXL2	Q76L83	1435 aa		13.05	□□□□□ -0.32
NF1-222	ENST00000582892	GLI2	P10070	1586 aa		13.05	□□□□□ -0.32
NF1-222	ENST00000582892	ABCC2	Q92887	1545 aa		13.03	□□□□□ -0.32
NF1-222	ENST00000582892	MAP3K4	Q9Y6R4	1608 aa		13.02	□□□□□ -0.32
NF1-222	ENST00000582892	KIAA0586	Q9BVV6	1533 aa		13	□□□□□ -0.33
NF1-222	ENST00000582892	PTPRG	P23470	1445 aa		12.98	□□□□□ -0.33
NF1-222	ENST00000582892	KIF21B	O75037	1637 aa		12.98	□□□□□ -0.33
NF1-222	ENST00000582892	PLB1	Q6P1J6	1458 aa		12.97	□□□□□ -0.33
NF1-222	ENST00000582892	POTEH	Q6S545	545 aa		12.97	□□□□□ -0.33
NF1-222	ENST00000582892	EPRS	P07814	1512 aa	Known RBP	12.97	□□□□□ -0.33
NF1-222	ENST00000582892	LMTK3	Q96Q04	1460 aa		12.94	□□□□□ -0.34
NF1-222	ENST00000582892	ZCCHC11	Q5TAX3	1644 aa	Known RBP	12.94	□□□□□ -0.34
NF1-222	ENST00000582892	RBM42	Q9BTD8	480 aa	Known RBP	12.93	□□□□□ -0.34
NF1-222	ENST00000582892	TEX14	Q8IWB6	1497 aa		12.91	□□□□□ -0.34
NF1-222	ENST00000582892	TNIK	Q9UKE5	1360 aa		12.9	□□□□□ -0.34
NF1-222	ENST00000582892	UHRF1BP1L	A0JNW5	1464 aa		12.9	□□□□□ -0.34
NF1-222	ENST00000582892	ILDR2	Q71H61	639 aa		12.89	□□□□□ -0.35
NF1-222	ENST00000582892	IGF1R	P08069	1367 aa		12.88	□□□□□ -0.35
NF1-222	ENST00000582892	KDM5B	Q9UGL1	1544 aa		12.88	□□□□□ -0.35
NF1-222	ENST00000582892	UACA	Q9BZF9	1416 aa		12.88	□□□□□ -0.35
NF1-222	ENST00000582892	MKRN4P	Q13434	485 aa	Predicted RBP	12.87	□□□□□ -0.35
NF1-222	ENST00000582892	DISP1	Q96F81	1524 aa		12.86	□□□□□ -0.35
NF1-222	ENST00000582892	IQGAP2	Q13576	1575 aa		12.86	□□□□□ -0.35
NF1-222	ENST00000582892	ADAMTSL3	P82987	1691 aa		12.84	□□□□□ -0.35
NF1-222	ENST00000582892	CARMIL2	Q6F5E8	1435 aa		12.84	□□□□□ -0.35
NF1-222	ENST00000582892	PTPRM	P28827	1452 aa		12.84	□□□□□ -0.35
NF1-222	ENST00000582892	SUPT5H	O00267	1087 aa	Known RBP	12.82	□□□□□ -0.36
NF1-222	ENST00000582892	PCF11	O94913	1555 aa	Known RBP	12.81	□□□□□ -0.36
NF1-222	ENST00000582892	CFAP43	Q8NDM7	1665 aa		12.81	□□□□□ -0.36
NF1-222	ENST00000582892	WDR7	Q9Y4E6	1490 aa		12.81	□□□□□ -0.36
NF1-222	ENST00000582892	SPDYE2B	A6NHP3	402 aa		12.8	□□□□□ -0.36
NF1-222	ENST00000582892	SPDYE6	P0CI01	402 aa		12.8	□□□□□ -0.36
NF1-222	ENST00000582892	SPDYE2	Q495Y8	402 aa		12.8	□□□□□ -0.36
NF1-222	ENST00000582892	MADD	Q8WXG6	1647 aa		12.8	□□□□□ -0.36
NF1-222	ENST00000582892	CD109	Q6YHK3	1445 aa		12.78	□□□□□ -0.36
NF1-222	ENST00000582892	MAGI3	Q5TCQ9	1506 aa		12.78	□□□□□ -0.36
NF1-222	ENST00000582892	KIAA0556	O60303	1618 aa		12.77	□□□□□ -0.36

Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms