RNA–Protein interactions for RNA: ENST00000580542.5

ITGB4-207, Transcript of integrin subunit beta 4, humanhuman

TSL 1 (best)

Gene ITGB4, Length 2,798 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGB4-207ENST00000580542 TSHZ2Q9NRE2 1034 aa20.27■□□□□ 0.84
ITGB4-207ENST00000580542 CUL7Q14999 1698 aa20.25■□□□□ 0.83
ITGB4-207ENST00000580542 CEP162Q5TB80 1403 aa20.24■□□□□ 0.83
ITGB4-207ENST00000580542 IFT140Q96RY7 1462 aa20.22■□□□□ 0.83
ITGB4-207ENST00000580542 ZNF316A6NFI3 1004 aaPredicted RBP20.21■□□□□ 0.83
ITGB4-207ENST00000580542 GAPVD1Q14C86 1478 aa20.18■□□□□ 0.82
ITGB4-207ENST00000580542 SUPT16HQ9Y5B9 1047 aaKnown RBP20.18■□□□□ 0.82
ITGB4-207ENST00000580542 MIER1Q8N108 512 aa20.17■□□□□ 0.82
ITGB4-207ENST00000580542 CARMIL1Q5VZK9 1371 aa20.16■□□□□ 0.82
ITGB4-207ENST00000580542 PBRM1Q86U86 1689 aa20.16■□□□□ 0.82
ITGB4-207ENST00000580542 TDRD9Q8NDG6 1382 aaKnown RBP20.12■□□□□ 0.81
ITGB4-207ENST00000580542 UBTFP17480 764 aaKnown RBP20.12■□□□□ 0.81
ITGB4-207ENST00000580542 CLSPNQ9HAW4 1339 aa20.09■□□□□ 0.81
ITGB4-207ENST00000580542 APLP2Q06481 763 aa20.06■□□□□ 0.8
ITGB4-207ENST00000580542 ZNF608Q9ULD9 1512 aaPredicted RBP20.06■□□□□ 0.8
ITGB4-207ENST00000580542 EIF4G3O43432 1585 aaKnown RBP20.06■□□□□ 0.8
ITGB4-207ENST00000580542 GRIN2BQ13224 1484 aa20.05■□□□□ 0.8
ITGB4-207ENST00000580542 ADAMTS12P58397 1594 aa20.05■□□□□ 0.8
ITGB4-207ENST00000580542 CLIP1P30622 1438 aa20.04■□□□□ 0.8
ITGB4-207ENST00000580542 AQRO60306 1485 aaKnown RBP eCLIP20.04■□□□□ 0.8
ITGB4-207ENST00000580542 CTTNBP2Q8WZ74 1663 aa20.02■□□□□ 0.79
ITGB4-207ENST00000580542 FHAD1B1AJZ9 1412 aa19.99■□□□□ 0.79
ITGB4-207ENST00000580542 ARAP1Q96P48 1450 aa19.93■□□□□ 0.78
ITGB4-207ENST00000580542 MAGI1Q96QZ7 1491 aaPredicted RBP19.92■□□□□ 0.78
ITGB4-207ENST00000580542 ARHGAP35Q9NRY4 1499 aa19.92■□□□□ 0.78
ITGB4-207ENST00000580542 VPS8Q8N3P4 1428 aa19.91■□□□□ 0.78
ITGB4-207ENST00000580542 SNAPC4Q5SXM2 1469 aa19.89■□□□□ 0.77
ITGB4-207ENST00000580542 EFCAB5A4FU69 1503 aa19.87■□□□□ 0.77
ITGB4-207ENST00000580542 SAMD9Q5K651 1589 aa19.84■□□□□ 0.77
ITGB4-207ENST00000580542 SYNJ2O15056 1496 aa19.82■□□□□ 0.76
ITGB4-207ENST00000580542 GRIN2AQ12879 1464 aa19.82■□□□□ 0.76
ITGB4-207ENST00000580542 IQGAP2Q13576 1575 aa19.77■□□□□ 0.76
ITGB4-207ENST00000580542 ANO8Q9HCE9 1232 aaPredicted RBP19.76■□□□□ 0.75
ITGB4-207ENST00000580542 RBM19Q9Y4C8 960 aaKnown RBP19.75■□□□□ 0.75
ITGB4-207ENST00000580542 BCANQ96GW7 911 aa19.73■□□□□ 0.75
ITGB4-207ENST00000580542 KIAA0586Q9BVV6 1533 aa19.73■□□□□ 0.75
ITGB4-207ENST00000580542 UGGT2Q9NYU1 1516 aa19.73■□□□□ 0.75
ITGB4-207ENST00000580542 HNRNPUL2Q1KMD3 747 aaKnown RBP19.72■□□□□ 0.75
ITGB4-207ENST00000580542 CEP170Q5SW79 1584 aa19.72■□□□□ 0.75
ITGB4-207ENST00000580542 NUP160Q12769 1436 aa19.72■□□□□ 0.75
ITGB4-207ENST00000580542 MAP3K1Q13233 1512 aa19.69■□□□□ 0.74
ITGB4-207ENST00000580542 RANGAP1P46060 587 aaPredicted RBP19.66■□□□□ 0.74
ITGB4-207ENST00000580542 FHOD3Q2V2M9 1422 aa19.64■□□□□ 0.73
ITGB4-207ENST00000580542 PCF11O94913 1555 aaKnown RBP19.63■□□□□ 0.73
ITGB4-207ENST00000580542 CHD1O14646 1710 aa19.63■□□□□ 0.73
ITGB4-207ENST00000580542 FYCO1Q9BQS8 1478 aa19.62■□□□□ 0.73
ITGB4-207ENST00000580542 FMN1Q68DA7 1419 aa19.61■□□□□ 0.73
ITGB4-207ENST00000580542 MSH5O43196 834 aa19.61■□□□□ 0.73
ITGB4-207ENST00000580542 CASKIN1Q8WXD9 1431 aa19.61■□□□□ 0.73
ITGB4-207ENST00000580542 CFAP43Q8NDM7 1665 aa19.6■□□□□ 0.73
ITGB4-207ENST00000580542 CHMP7Q8WUX9 453 aaPredicted RBP19.6■□□□□ 0.73
ITGB4-207ENST00000580542 KIAA0556O60303 1618 aa19.6■□□□□ 0.73
ITGB4-207ENST00000580542 DISP1Q96F81 1524 aa19.59■□□□□ 0.73
ITGB4-207ENST00000580542 TIAM1Q13009 1591 aa19.58■□□□□ 0.73
ITGB4-207ENST00000580542 FKBP8Q14318 412 aa19.55■□□□□ 0.72
ITGB4-207ENST00000580542 DEKP35659 375 aaKnown RBP19.54■□□□□ 0.72
ITGB4-207ENST00000580542 MYT1LQ9UL68 1186 aa19.53■□□□□ 0.72
ITGB4-207ENST00000580542 LRRIQ1Q96JM4 1722 aa19.53■□□□□ 0.72
ITGB4-207ENST00000580542 SHROOM2Q13796 1616 aa19.52■□□□□ 0.71
ITGB4-207ENST00000580542 P3H3Q8IVL6 736 aa19.49■□□□□ 0.71
ITGB4-207ENST00000580542 SALL2Q9Y467 1007 aaPredicted RBP19.48■□□□□ 0.71
ITGB4-207ENST00000580542 LRRC9Q6ZRR7 1453 aa19.46■□□□□ 0.71
ITGB4-207ENST00000580542 CLASP1Q7Z460 1538 aa19.46■□□□□ 0.71
ITGB4-207ENST00000580542 HECW1Q76N89 1606 aa19.45■□□□□ 0.7
ITGB4-207ENST00000580542 FBLN2P98095 1184 aa19.44■□□□□ 0.7
ITGB4-207ENST00000580542 KANK4Q5T7N3 995 aaPredicted RBP19.44■□□□□ 0.7
ITGB4-207ENST00000580542 DHX57Q6P158 1386 aaKnown RBP19.42■□□□□ 0.7
ITGB4-207ENST00000580542 JPH4Q96JJ6 628 aa19.42■□□□□ 0.7
ITGB4-207ENST00000580542 CCDC136Q96JN2 1154 aa19.42■□□□□ 0.7
ITGB4-207ENST00000580542 CCDC18Q5T9S5 1454 aa19.41■□□□□ 0.7
ITGB4-207ENST00000580542 ITGAEP38570 1179 aa19.41■□□□□ 0.7
ITGB4-207ENST00000580542 CARMIL2Q6F5E8 1435 aa19.41■□□□□ 0.7
ITGB4-207ENST00000580542 NEFLP07196 543 aa19.4■□□□□ 0.7
ITGB4-207ENST00000580542 RAPGEF6Q8TEU7 1601 aa19.39■□□□□ 0.69
ITGB4-207ENST00000580542 UBE2Q2Q8WVN8 375 aa19.38■□□□□ 0.69
ITGB4-207ENST00000580542 FANCIQ9NVI1 1328 aa19.37■□□□□ 0.69
ITGB4-207ENST00000580542 RRBP1Q9P2E9 1410 aaKnown RBP19.37■□□□□ 0.69
ITGB4-207ENST00000580542 EPRSP07814 1512 aaKnown RBP19.36■□□□□ 0.69
ITGB4-207ENST00000580542 ERICH6BQ5W0A0 696 aa19.35■□□□□ 0.69
ITGB4-207ENST00000580542 ABCA8O94911 1581 aa19.34■□□□□ 0.69
ITGB4-207ENST00000580542 NUP153P49790 1475 aaKnown RBP19.33■□□□□ 0.68
ITGB4-207ENST00000580542 PRG4Q92954 1404 aaPredicted RBP19.33■□□□□ 0.68
ITGB4-207ENST00000580542 EHBP1L1Q8N3D4 1523 aa19.32■□□□□ 0.68
ITGB4-207ENST00000580542 ARHGEF11O15085 1522 aa19.3■□□□□ 0.68
ITGB4-207ENST00000580542 MAGI3Q5TCQ9 1506 aa19.3■□□□□ 0.68
ITGB4-207ENST00000580542 SUPT6HQ7KZ85 1726 aaKnown RBP19.27■□□□□ 0.67
ITGB4-207ENST00000580542 PLB1Q6P1J6 1458 aa19.26■□□□□ 0.67
ITGB4-207ENST00000580542 CDK13Q14004 1512 aaKnown RBP19.26■□□□□ 0.67
ITGB4-207ENST00000580542 KCNH8Q96L42 1107 aa19.25■□□□□ 0.67
ITGB4-207ENST00000580542 ERCC6L2Q5T890 1561 aa19.24■□□□□ 0.67
ITGB4-207ENST00000580542 PHLDB1Q86UU1 1377 aa19.24■□□□□ 0.67
ITGB4-207ENST00000580542 CCNB3Q8WWL7 1395 aa19.23■□□□□ 0.67
ITGB4-207ENST00000580542 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.21■□□□□ 0.67
ITGB4-207ENST00000580542 MTUS2Q5JR59 1369 aa19.21■□□□□ 0.67
ITGB4-207ENST00000580542 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.2■□□□□ 0.66
ITGB4-207ENST00000580542 ATP1B4Q9UN42 357 aaPredicted RBP19.2■□□□□ 0.66
ITGB4-207ENST00000580542 NCOA2Q15596 1464 aa19.2■□□□□ 0.66
ITGB4-207ENST00000580542 PTPRGP23470 1445 aa19.19■□□□□ 0.66
ITGB4-207ENST00000580542 ADCY10Q96PN6 1610 aa19.19■□□□□ 0.66
ITGB4-207ENST00000580542 CDK11AQ9UQ88 783 aaPredicted RBP19.19■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms