RNA–Protein interactions for RNA: ENST00000575431.1

CCDC40-214, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-214ENST00000575431 RIMBP3BA6NNM3 1639 aa15.85■□□□□ 0.13
CCDC40-214ENST00000575431 RIMBP3Q9UFD9 1639 aa15.85■□□□□ 0.13
CCDC40-214ENST00000575431 SHROOM2Q13796 1616 aa15.84■□□□□ 0.13
CCDC40-214ENST00000575431 JPH4Q96JJ6 628 aa15.83■□□□□ 0.12
CCDC40-214ENST00000575431 FAM9AQ8IZU1 332 aaPredicted RBP15.81■□□□□ 0.12
CCDC40-214ENST00000575431 KIF21BO75037 1637 aa15.78■□□□□ 0.12
CCDC40-214ENST00000575431 IQGAP2Q13576 1575 aa15.78■□□□□ 0.12
CCDC40-214ENST00000575431 CTTNBP2Q8WZ74 1663 aa15.76■□□□□ 0.11
CCDC40-214ENST00000575431 PRG4Q92954 1404 aaPredicted RBP15.76■□□□□ 0.11
CCDC40-214ENST00000575431 ARAP1Q96P48 1450 aa15.73■□□□□ 0.11
CCDC40-214ENST00000575431 CARMIL2Q6F5E8 1435 aa15.72■□□□□ 0.11
CCDC40-214ENST00000575431 CYB5RLQ6IPT4 315 aa15.72■□□□□ 0.11
CCDC40-214ENST00000575431 UGGT2Q9NYU1 1516 aa15.7■□□□□ 0.1
CCDC40-214ENST00000575431 ERCC6L2Q5T890 1561 aa15.7■□□□□ 0.1
CCDC40-214ENST00000575431 GOLGA3Q08378 1498 aa15.69■□□□□ 0.1
CCDC40-214ENST00000575431 UBTFP17480 764 aaKnown RBP15.64■□□□□ 0.09
CCDC40-214ENST00000575431 DISP1Q96F81 1524 aa15.63■□□□□ 0.09
CCDC40-214ENST00000575431 TNIKQ9UKE5 1360 aa15.63■□□□□ 0.09
CCDC40-214ENST00000575431 KIAA0556O60303 1618 aa15.61■□□□□ 0.09
CCDC40-214ENST00000575431 PTPRGP23470 1445 aa15.61■□□□□ 0.09
CCDC40-214ENST00000575431 SAMD9Q5K651 1589 aa15.55■□□□□ 0.08
CCDC40-214ENST00000575431 EFCAB5A4FU69 1503 aa15.55■□□□□ 0.08
CCDC40-214ENST00000575431 EHMT2Q96KQ7 1210 aa15.54■□□□□ 0.08
CCDC40-214ENST00000575431 NPM1P06748 294 aaKnown RBP eCLIP15.53■□□□□ 0.08
CCDC40-214ENST00000575431 UACAQ9BZF9 1416 aa15.51■□□□□ 0.07
CCDC40-214ENST00000575431 UHRF1BP1LA0JNW5 1464 aa15.51■□□□□ 0.07
CCDC40-214ENST00000575431 TTBK1Q5TCY1 1321 aaPredicted RBP15.5■□□□□ 0.07
CCDC40-214ENST00000575431 RANGAP1P46060 587 aaPredicted RBP15.49■□□□□ 0.07
CCDC40-214ENST00000575431 ADCY10Q96PN6 1610 aa15.49■□□□□ 0.07
CCDC40-214ENST00000575431 P3H3Q8IVL6 736 aa15.48■□□□□ 0.07
CCDC40-214ENST00000575431 ABCC2Q92887 1545 aa15.48■□□□□ 0.07
CCDC40-214ENST00000575431 ABCA8O94911 1581 aa15.45■□□□□ 0.06
CCDC40-214ENST00000575431 PLB1Q6P1J6 1458 aa15.43■□□□□ 0.06
CCDC40-214ENST00000575431 ARHGAP35Q9NRY4 1499 aa15.43■□□□□ 0.06
CCDC40-214ENST00000575431 MAPKBP1O60336 1514 aa15.43■□□□□ 0.06
CCDC40-214ENST00000575431 FHOD3Q2V2M9 1422 aa15.43■□□□□ 0.06
CCDC40-214ENST00000575431 KDM5BQ9UGL1 1544 aa15.42■□□□□ 0.06
CCDC40-214ENST00000575431 FMN1Q68DA7 1419 aa15.42■□□□□ 0.06
CCDC40-214ENST00000575431 CLIP1P30622 1438 aa15.4■□□□□ 0.06
CCDC40-214ENST00000575431 RAPGEF6Q8TEU7 1601 aa15.39■□□□□ 0.05
CCDC40-214ENST00000575431 TRHP20396 242 aaPredicted RBP15.38■□□□□ 0.05
CCDC40-214ENST00000575431 LOC105371045A0A1W2PR82 267 aa15.37■□□□□ 0.05
CCDC40-214ENST00000575431 ZCCHC11Q5TAX3 1644 aaKnown RBP15.35■□□□□ 0.05
CCDC40-214ENST00000575431 CEP162Q5TB80 1403 aa15.34■□□□□ 0.05
CCDC40-214ENST00000575431 ASXL2Q76L83 1435 aa15.33■□□□□ 0.04
CCDC40-214ENST00000575431 ABCC10Q5T3U5 1492 aa15.33■□□□□ 0.04
CCDC40-214ENST00000575431 ATP10BO94823 1461 aa15.32■□□□□ 0.04
CCDC40-214ENST00000575431 NUP153P49790 1475 aaKnown RBP15.31■□□□□ 0.04
CCDC40-214ENST00000575431 HECW1Q76N89 1606 aa15.3■□□□□ 0.04
CCDC40-214ENST00000575431 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.28■□□□□ 0.04
CCDC40-214ENST00000575431 HNRNPUL2Q1KMD3 747 aaKnown RBP15.28■□□□□ 0.04
CCDC40-214ENST00000575431 DIP2BQ9P265 1576 aa15.28■□□□□ 0.04
CCDC40-214ENST00000575431 WDR7Q9Y4E6 1490 aa15.27■□□□□ 0.04
CCDC40-214ENST00000575431 CASKIN1Q8WXD9 1431 aa15.27■□□□□ 0.04
CCDC40-214ENST00000575431 FAM69CQ0P6D2 419 aa15.27■□□□□ 0.04
CCDC40-214ENST00000575431 KIF13AQ9H1H9 1805 aa15.27■□□□□ 0.03
CCDC40-214ENST00000575431 GLI2P10070 1586 aa15.26■□□□□ 0.03
CCDC40-214ENST00000575431 PLEKHD1A6NEE1 506 aa15.25■□□□□ 0.03
CCDC40-214ENST00000575431 ARID3CA6NKF2 412 aa15.25■□□□□ 0.03
CCDC40-214ENST00000575431 ATP1B4Q9UN42 357 aaPredicted RBP15.25■□□□□ 0.03
CCDC40-214ENST00000575431 CDK11AQ9UQ88 783 aaPredicted RBP15.25■□□□□ 0.03
CCDC40-214ENST00000575431 FYCO1Q9BQS8 1478 aa15.25■□□□□ 0.03
CCDC40-214ENST00000575431 EPRSP07814 1512 aaKnown RBP15.24■□□□□ 0.03
CCDC40-214ENST00000575431 CCDC18Q5T9S5 1454 aa15.23■□□□□ 0.03
CCDC40-214ENST00000575431 PCF11O94913 1555 aaKnown RBP15.22■□□□□ 0.03
CCDC40-214ENST00000575431 KCNH8Q96L42 1107 aa15.2■□□□□ 0.02
CCDC40-214ENST00000575431 CDK13Q14004 1512 aaKnown RBP15.18■□□□□ 0.02
CCDC40-214ENST00000575431 VPS8Q8N3P4 1428 aa15.17■□□□□ 0.02
CCDC40-214ENST00000575431 CFAP43Q8NDM7 1665 aa15.17■□□□□ 0.02
CCDC40-214ENST00000575431 MAP3K4Q9Y6R4 1608 aa15.17■□□□□ 0.02
CCDC40-214ENST00000575431 LRRIQ1Q96JM4 1722 aa15.16■□□□□ 0.02
CCDC40-214ENST00000575431 ABCA9Q8IUA7 1624 aa15.14■□□□□ 0.01
CCDC40-214ENST00000575431 TEX14Q8IWB6 1497 aa15.14■□□□□ 0.01
CCDC40-214ENST00000575431 TROQ12816 1431 aaPredicted RBP15.13■□□□□ 0.01
CCDC40-214ENST00000575431 CD109Q6YHK3 1445 aa15.13■□□□□ 0.01
CCDC40-214ENST00000575431 TSPOAP1O95153 1857 aa15.12■□□□□ 0.01
CCDC40-214ENST00000575431 MAGI3Q5TCQ9 1506 aa15.12■□□□□ 0.01
CCDC40-214ENST00000575431 KIF14Q15058 1648 aa15.09■□□□□ 0.01
CCDC40-214ENST00000575431 PPRC1Q5VV67 1664 aaKnown RBP15.09■□□□□ 0.01
CCDC40-214ENST00000575431 MAP3K1Q13233 1512 aa15.08■□□□□ 0.01
CCDC40-214ENST00000575431 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.07■□□□□ 0
CCDC40-214ENST00000575431 MTUS2Q5JR59 1369 aa15.07■□□□□ 0
CCDC40-214ENST00000575431 PHLDB1Q86UU1 1377 aa15.07■□□□□ 0
CCDC40-214ENST00000575431 APLP2Q06481 763 aa15.06■□□□□ 0
CCDC40-214ENST00000575431 TIAM1Q13009 1591 aa15.05■□□□□ -0
CCDC40-214ENST00000575431 TTC37Q6PGP7 1564 aa15.03■□□□□ -0
CCDC40-214ENST00000575431 EHBP1L1Q8N3D4 1523 aa15.03■□□□□ -0
CCDC40-214ENST00000575431 ARAP3Q8WWN8 1544 aa15.03■□□□□ -0
CCDC40-214ENST00000575431 NEO1Q92859 1461 aa15.03■□□□□ -0
CCDC40-214ENST00000575431 KDM6BO15054 1643 aa15.03■□□□□ -0
CCDC40-214ENST00000575431 PLCH2O75038 1416 aa15.02■□□□□ -0
CCDC40-214ENST00000575431 MYO5CQ9NQX4 1742 aa15.02□□□□□ -0.01
CCDC40-214ENST00000575431 CFAP74Q9C0B2 1584 aa15.02□□□□□ -0.01
CCDC40-214ENST00000575431 EFCAB2Q5VUJ9 269 aa14.99□□□□□ -0.01
CCDC40-214ENST00000575431 FANCAO15360 1455 aa14.99□□□□□ -0.01
CCDC40-214ENST00000575431 LRRC9Q6ZRR7 1453 aa14.98□□□□□ -0.01
CCDC40-214ENST00000575431 SUPT6HQ7KZ85 1726 aaKnown RBP14.97□□□□□ -0.01
CCDC40-214ENST00000575431 AKNAQ7Z591 1439 aa14.96□□□□□ -0.01
CCDC40-214ENST00000575431 CCNB3Q8WWL7 1395 aa14.96□□□□□ -0.02
CCDC40-214ENST00000575431 PREX2Q70Z35 1606 aa14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms