RNA–Protein interactions for RNA: ENST00000573309.5

CIITA-209, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best)

Gene CIITA, Length 3,366 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-209ENST00000573309 ZNF316A6NFI3 1004 aaPredicted RBP17.97■□□□□ 0.47
CIITA-209ENST00000573309 ARAP1Q96P48 1450 aa17.97■□□□□ 0.47
CIITA-209ENST00000573309 DNMBPQ6XZF7 1577 aa17.96■□□□□ 0.47
CIITA-209ENST00000573309 LAMC3Q9Y6N6 1575 aa17.96■□□□□ 0.47
CIITA-209ENST00000573309 VPS8Q8N3P4 1428 aa17.96■□□□□ 0.46
CIITA-209ENST00000573309 FHOD3Q2V2M9 1422 aa17.92■□□□□ 0.46
CIITA-209ENST00000573309 ZNF608Q9ULD9 1512 aaPredicted RBP17.91■□□□□ 0.46
CIITA-209ENST00000573309 MIER1Q8N108 512 aa17.9■□□□□ 0.46
CIITA-209ENST00000573309 GAPVD1Q14C86 1478 aa17.9■□□□□ 0.46
CIITA-209ENST00000573309 ARHGAP35Q9NRY4 1499 aa17.88■□□□□ 0.45
CIITA-209ENST00000573309 FAM50AQ14320 339 aaKnown RBP17.87■□□□□ 0.45
CIITA-209ENST00000573309 PRDM2Q13029 1718 aa17.86■□□□□ 0.45
CIITA-209ENST00000573309 ABCA10Q8WWZ4 1543 aa17.85■□□□□ 0.45
CIITA-209ENST00000573309 CHMP7Q8WUX9 453 aaPredicted RBP17.84■□□□□ 0.45
CIITA-209ENST00000573309 ERICH3Q5RHP9 1530 aa17.81■□□□□ 0.44
CIITA-209ENST00000573309 MRC2Q9UBG0 1479 aa17.81■□□□□ 0.44
CIITA-209ENST00000573309 SNAPC4Q5SXM2 1469 aa17.64■□□□□ 0.42
CIITA-209ENST00000573309 CHIC2Q9UKJ5 165 aa17.63■□□□□ 0.41
CIITA-209ENST00000573309 TARBP1Q13395 1621 aaKnown RBP17.62■□□□□ 0.41
CIITA-209ENST00000573309 GRIN2BQ13224 1484 aa17.6■□□□□ 0.41
CIITA-209ENST00000573309 MTUS2Q5JR59 1369 aa17.6■□□□□ 0.41
CIITA-209ENST00000573309 SUPT16HQ9Y5B9 1047 aaKnown RBP17.59■□□□□ 0.41
CIITA-209ENST00000573309 PHLDB1Q86UU1 1377 aa17.59■□□□□ 0.41
CIITA-209ENST00000573309 FHAD1B1AJZ9 1412 aa17.58■□□□□ 0.4
CIITA-209ENST00000573309 IFT140Q96RY7 1462 aa17.58■□□□□ 0.4
CIITA-209ENST00000573309 ABCA5Q8WWZ7 1642 aa17.58■□□□□ 0.4
CIITA-209ENST00000573309 ZNF777Q9ULD5 760 aaPredicted RBP17.54■□□□□ 0.4
CIITA-209ENST00000573309 CCNB3Q8WWL7 1395 aa17.54■□□□□ 0.4
CIITA-209ENST00000573309 JPH4Q96JJ6 628 aa17.54■□□□□ 0.4
CIITA-209ENST00000573309 PCF11O94913 1555 aaKnown RBP17.53■□□□□ 0.4
CIITA-209ENST00000573309 WDR62O43379 1518 aa17.52■□□□□ 0.4
CIITA-209ENST00000573309 TSHZ2Q9NRE2 1034 aa17.52■□□□□ 0.39
CIITA-209ENST00000573309 WDR97A6NE52 1622 aa17.5■□□□□ 0.39
CIITA-209ENST00000573309 CUL7Q14999 1698 aa17.5■□□□□ 0.39
CIITA-209ENST00000573309 RRP7BPQ9NSQ0 103 aa17.49■□□□□ 0.39
CIITA-209ENST00000573309 EIF4G3O43432 1585 aaKnown RBP17.48■□□□□ 0.39
CIITA-209ENST00000573309 ANP32EQ9BTT0 268 aa17.48■□□□□ 0.39
CIITA-209ENST00000573309 LRRC9Q6ZRR7 1453 aa17.48■□□□□ 0.39
CIITA-209ENST00000573309 FMN1Q68DA7 1419 aa17.45■□□□□ 0.38
CIITA-209ENST00000573309 PBRM1Q86U86 1689 aa17.44■□□□□ 0.38
CIITA-209ENST00000573309 THOC2Q8NI27 1593 aaKnown RBP17.44■□□□□ 0.38
CIITA-209ENST00000573309 TIAM1Q13009 1591 aa17.43■□□□□ 0.38
CIITA-209ENST00000573309 ZNF644Q9H582 1327 aaPredicted RBP17.43■□□□□ 0.38
CIITA-209ENST00000573309 SIN3AQ96ST3 1273 aa17.43■□□□□ 0.38
CIITA-209ENST00000573309 CDK13Q14004 1512 aaKnown RBP17.43■□□□□ 0.38
CIITA-209ENST00000573309 GRIN2AQ12879 1464 aa17.42■□□□□ 0.38
CIITA-209ENST00000573309 BCL11AQ9H165 835 aa17.42■□□□□ 0.38
CIITA-209ENST00000573309 ADAMTS12P58397 1594 aa17.42■□□□□ 0.38
CIITA-209ENST00000573309 CASKIN1Q8WXD9 1431 aa17.41■□□□□ 0.38
CIITA-209ENST00000573309 CLSPNQ9HAW4 1339 aa17.41■□□□□ 0.38
CIITA-209ENST00000573309 KCNH8Q96L42 1107 aa17.39■□□□□ 0.37
CIITA-209ENST00000573309 CTTNBP2Q8WZ74 1663 aa17.39■□□□□ 0.37
CIITA-209ENST00000573309 IQGAP2Q13576 1575 aa17.39■□□□□ 0.37
CIITA-209ENST00000573309 RAB3GAP2Q9H2M9 1393 aa17.37■□□□□ 0.37
CIITA-209ENST00000573309 TRIM52Q96A61 297 aa17.37■□□□□ 0.37
CIITA-209ENST00000573309 PLB1Q6P1J6 1458 aa17.36■□□□□ 0.37
CIITA-209ENST00000573309 HIRIP3Q9BW71 556 aaPredicted RBP17.35■□□□□ 0.37
CIITA-209ENST00000573309 SYNJ2O15056 1496 aa17.33■□□□□ 0.36
CIITA-209ENST00000573309 FYCO1Q9BQS8 1478 aa17.33■□□□□ 0.36
CIITA-209ENST00000573309 RRBP1Q9P2E9 1410 aaKnown RBP17.33■□□□□ 0.36
CIITA-209ENST00000573309 FOXD1Q16676 465 aa17.32■□□□□ 0.36
CIITA-209ENST00000573309 EFCAB5A4FU69 1503 aa17.32■□□□□ 0.36
CIITA-209ENST00000573309 KIAA0586Q9BVV6 1533 aa17.32■□□□□ 0.36
CIITA-209ENST00000573309 DHX57Q6P158 1386 aaKnown RBP17.32■□□□□ 0.36
CIITA-209ENST00000573309 PRG4Q92954 1404 aaPredicted RBP17.29■□□□□ 0.36
CIITA-209ENST00000573309 CEP170Q5SW79 1584 aa17.29■□□□□ 0.36
CIITA-209ENST00000573309 NCOA2Q15596 1464 aa17.29■□□□□ 0.36
CIITA-209ENST00000573309 DISP1Q96F81 1524 aa17.29■□□□□ 0.36
CIITA-209ENST00000573309 MAGI3Q5TCQ9 1506 aa17.27■□□□□ 0.36
CIITA-209ENST00000573309 MAGI1Q96QZ7 1491 aaPredicted RBP17.26■□□□□ 0.35
CIITA-209ENST00000573309 PLEKHD1A6NEE1 506 aa17.26■□□□□ 0.35
CIITA-209ENST00000573309 CFDP1Q9UEE9 299 aaPredicted RBP17.26■□□□□ 0.35
CIITA-209ENST00000573309 CDK11AQ9UQ88 783 aaPredicted RBP17.26■□□□□ 0.35
CIITA-209ENST00000573309 EPRSP07814 1512 aaKnown RBP17.25■□□□□ 0.35
CIITA-209ENST00000573309 BCANQ96GW7 911 aa17.25■□□□□ 0.35
CIITA-209ENST00000573309 FGD6Q6ZV73 1430 aa17.25■□□□□ 0.35
CIITA-209ENST00000573309 PTPRKQ15262 1439 aa17.25■□□□□ 0.35
CIITA-209ENST00000573309 SAMD9Q5K651 1589 aa17.24■□□□□ 0.35
CIITA-209ENST00000573309 CARMIL2Q6F5E8 1435 aa17.23■□□□□ 0.35
CIITA-209ENST00000573309 SETD5Q9C0A6 1442 aa17.22■□□□□ 0.35
CIITA-209ENST00000573309 PTPRGP23470 1445 aa17.21■□□□□ 0.35
CIITA-209ENST00000573309 NUP153P49790 1475 aaKnown RBP17.19■□□□□ 0.34
CIITA-209ENST00000573309 LRRIQ1Q96JM4 1722 aa17.18■□□□□ 0.34
CIITA-209ENST00000573309 HNRNPMP52272 730 aaKnown RBP eCLIP17.18■□□□□ 0.34
CIITA-209ENST00000573309 MYOM3Q5VTT5 1437 aa17.17■□□□□ 0.34
CIITA-209ENST00000573309 KIAA0556O60303 1618 aa17.17■□□□□ 0.34
CIITA-209ENST00000573309 UGGT2Q9NYU1 1516 aa17.15■□□□□ 0.34
CIITA-209ENST00000573309 ERCC6L2Q5T890 1561 aa17.14■□□□□ 0.33
CIITA-209ENST00000573309 NUP160Q12769 1436 aa17.14■□□□□ 0.33
CIITA-209ENST00000573309 MYT1LQ9UL68 1186 aa17.14■□□□□ 0.33
CIITA-209ENST00000573309 FKBP8Q14318 412 aa17.14■□□□□ 0.33
CIITA-209ENST00000573309 CFAP43Q8NDM7 1665 aa17.13■□□□□ 0.33
CIITA-209ENST00000573309 MAP3K1Q13233 1512 aa17.11■□□□□ 0.33
CIITA-209ENST00000573309 HECW1Q76N89 1606 aa17.1■□□□□ 0.33
CIITA-209ENST00000573309 RBM19Q9Y4C8 960 aaKnown RBP17.09■□□□□ 0.33
CIITA-209ENST00000573309 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.09■□□□□ 0.33
CIITA-209ENST00000573309 ZNF326Q5BKZ1 582 aaKnown RBP17.08■□□□□ 0.33
CIITA-209ENST00000573309 CNGB1Q14028 1251 aaPredicted RBP17.08■□□□□ 0.32
CIITA-209ENST00000573309 CCDC18Q5T9S5 1454 aa17.08■□□□□ 0.32
CIITA-209ENST00000573309 EHBP1L1Q8N3D4 1523 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms