RNA–Protein interactions for RNA: ENST00000570771.1

VPS53-209, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 366 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-209ENST00000570771 KIF27Q86VH2 1401 aa10.84□□□□□ -0.67
VPS53-209ENST00000570771 ERICH3Q5RHP9 1530 aa10.82□□□□□ -0.68
VPS53-209ENST00000570771 MAGI1Q96QZ7 1491 aaPredicted RBP10.81□□□□□ -0.68
VPS53-209ENST00000570771 FAM9AQ8IZU1 332 aaPredicted RBP10.8□□□□□ -0.68
VPS53-209ENST00000570771 CHD1O14646 1710 aa10.79□□□□□ -0.68
VPS53-209ENST00000570771 DSG3P32926 999 aa10.79□□□□□ -0.68
VPS53-209ENST00000570771 SYNJ2O15056 1496 aa10.79□□□□□ -0.68
VPS53-209ENST00000570771 GRIN2AQ12879 1464 aa10.77□□□□□ -0.69
VPS53-209ENST00000570771 PRXQ9BXM0 1461 aa10.77□□□□□ -0.69
VPS53-209ENST00000570771 CEP170Q5SW79 1584 aa10.77□□□□□ -0.69
VPS53-209ENST00000570771 FHAD1B1AJZ9 1412 aa10.76□□□□□ -0.69
VPS53-209ENST00000570771 RAPGEF2Q9Y4G8 1499 aa10.74□□□□□ -0.69
VPS53-209ENST00000570771 CARMIL1Q5VZK9 1371 aa10.74□□□□□ -0.69
VPS53-209ENST00000570771 CUL7Q14999 1698 aa10.73□□□□□ -0.69
VPS53-209ENST00000570771 NUP160Q12769 1436 aa10.73□□□□□ -0.69
VPS53-209ENST00000570771 CLASP1Q7Z460 1538 aa10.73□□□□□ -0.69
VPS53-209ENST00000570771 FBLN2P98095 1184 aa10.72□□□□□ -0.69
VPS53-209ENST00000570771 CSRNP3Q8WYN3 585 aa10.7□□□□□ -0.7
VPS53-209ENST00000570771 EEA1Q15075 1411 aa10.69□□□□□ -0.7
VPS53-209ENST00000570771 CHMP7Q8WUX9 453 aaPredicted RBP10.69□□□□□ -0.7
VPS53-209ENST00000570771 EHMT2Q96KQ7 1210 aa10.69□□□□□ -0.7
VPS53-209ENST00000570771 ERCC6L2Q5T890 1561 aa10.69□□□□□ -0.7
VPS53-209ENST00000570771 KIF21BO75037 1637 aa10.66□□□□□ -0.7
VPS53-209ENST00000570771 SPINK5Q9NQ38 1064 aaPredicted RBP10.65□□□□□ -0.7
VPS53-209ENST00000570771 CAPN15O75808 1086 aa10.64□□□□□ -0.71
VPS53-209ENST00000570771 OSCARQ8IYS5 282 aa10.63□□□□□ -0.71
VPS53-209ENST00000570771 U3KPZ7 1027 aaPredicted RBP10.63□□□□□ -0.71
VPS53-209ENST00000570771 SHROOM2Q13796 1616 aa10.62□□□□□ -0.71
VPS53-209ENST00000570771 KIAA0586Q9BVV6 1533 aa10.61□□□□□ -0.71
VPS53-209ENST00000570771 LOC105371045A0A1W2PR82 267 aa10.6□□□□□ -0.71
VPS53-209ENST00000570771 GOLGA3Q08378 1498 aa10.6□□□□□ -0.71
VPS53-209ENST00000570771 ARHGEF11O15085 1522 aa10.59□□□□□ -0.71
VPS53-209ENST00000570771 DNAJC5Q9H3Z4 198 aa10.59□□□□□ -0.71
VPS53-209ENST00000570771 IQGAP2Q13576 1575 aa10.59□□□□□ -0.71
VPS53-209ENST00000570771 DISP1Q96F81 1524 aa10.58□□□□□ -0.72
VPS53-209ENST00000570771 RIMBP3CA6NJZ7 1639 aa10.58□□□□□ -0.72
VPS53-209ENST00000570771 RIMBP3BA6NNM3 1639 aa10.58□□□□□ -0.72
VPS53-209ENST00000570771 RIMBP3Q9UFD9 1639 aa10.58□□□□□ -0.72
VPS53-209ENST00000570771 ARAP1Q96P48 1450 aa10.57□□□□□ -0.72
VPS53-209ENST00000570771 CTTNBP2Q8WZ74 1663 aa10.57□□□□□ -0.72
VPS53-209ENST00000570771 UGGT2Q9NYU1 1516 aa10.56□□□□□ -0.72
VPS53-209ENST00000570771 PRG4Q92954 1404 aaPredicted RBP10.56□□□□□ -0.72
VPS53-209ENST00000570771 JPH4Q96JJ6 628 aa10.53□□□□□ -0.72
VPS53-209ENST00000570771 SAMD9Q5K651 1589 aa10.52□□□□□ -0.72
VPS53-209ENST00000570771 KIAA0556O60303 1618 aa10.52□□□□□ -0.73
VPS53-209ENST00000570771 ARHGAP35Q9NRY4 1499 aa10.51□□□□□ -0.73
VPS53-209ENST00000570771 RANGAP1P46060 587 aaPredicted RBP10.51□□□□□ -0.73
VPS53-209ENST00000570771 NCBP3Q53F19 620 aaKnown RBP10.51□□□□□ -0.73
VPS53-209ENST00000570771 FHOD3Q2V2M9 1422 aa10.5□□□□□ -0.73
VPS53-209ENST00000570771 TNIKQ9UKE5 1360 aa10.49□□□□□ -0.73
VPS53-209ENST00000570771 UBTFP17480 764 aaKnown RBP10.48□□□□□ -0.73
VPS53-209ENST00000570771 P3H3Q8IVL6 736 aa10.48□□□□□ -0.73
VPS53-209ENST00000570771 CEP162Q5TB80 1403 aa10.46□□□□□ -0.74
VPS53-209ENST00000570771 PLB1Q6P1J6 1458 aa10.44□□□□□ -0.74
VPS53-209ENST00000570771 TTBK1Q5TCY1 1321 aaPredicted RBP10.44□□□□□ -0.74
VPS53-209ENST00000570771 CLIP1P30622 1438 aa10.43□□□□□ -0.74
VPS53-209ENST00000570771 ADCY10Q96PN6 1610 aa10.43□□□□□ -0.74
VPS53-209ENST00000570771 CYB5RLQ6IPT4 315 aa10.42□□□□□ -0.74
VPS53-209ENST00000570771 EFCAB5A4FU69 1503 aa10.42□□□□□ -0.74
VPS53-209ENST00000570771 ABCA8O94911 1581 aa10.41□□□□□ -0.74
VPS53-209ENST00000570771 PTPRGP23470 1445 aa10.41□□□□□ -0.74
VPS53-209ENST00000570771 CARMIL2Q6F5E8 1435 aa10.4□□□□□ -0.75
VPS53-209ENST00000570771 NPM3O75607 178 aaKnown RBP10.38□□□□□ -0.75
VPS53-209ENST00000570771 PCF11O94913 1555 aaKnown RBP10.38□□□□□ -0.75
VPS53-209ENST00000570771 NUP153P49790 1475 aaKnown RBP10.37□□□□□ -0.75
VPS53-209ENST00000570771 ABCC2Q92887 1545 aa10.37□□□□□ -0.75
VPS53-209ENST00000570771 ARID3CA6NKF2 412 aa10.36□□□□□ -0.75
VPS53-209ENST00000570771 UACAQ9BZF9 1416 aa10.35□□□□□ -0.75
VPS53-209ENST00000570771 CHRDL2Q6WN34 429 aa10.35□□□□□ -0.75
VPS53-209ENST00000570771 SP7Q8TDD2 431 aaPredicted RBP10.35□□□□□ -0.75
VPS53-209ENST00000570771 LRRIQ1Q96JM4 1722 aa10.35□□□□□ -0.75
VPS53-209ENST00000570771 CDK13Q14004 1512 aaKnown RBP10.34□□□□□ -0.75
VPS53-209ENST00000570771 UHRF1BP1LA0JNW5 1464 aa10.34□□□□□ -0.75
VPS53-209ENST00000570771 RAPGEF6Q8TEU7 1601 aa10.33□□□□□ -0.76
VPS53-209ENST00000570771 ABCB7O75027 752 aa10.33□□□□□ -0.76
VPS53-209ENST00000570771 KDM5BQ9UGL1 1544 aa10.32□□□□□ -0.76
VPS53-209ENST00000570771 ATP10BO94823 1461 aa10.31□□□□□ -0.76
VPS53-209ENST00000570771 RBM42Q9BTD8 480 aaKnown RBP10.31□□□□□ -0.76
VPS53-209ENST00000570771 ZNF219Q9P2Y4 722 aaPredicted RBP10.31□□□□□ -0.76
VPS53-209ENST00000570771 ZCCHC11Q5TAX3 1644 aaKnown RBP10.31□□□□□ -0.76
VPS53-209ENST00000570771 MAGI3Q5TCQ9 1506 aa10.31□□□□□ -0.76
VPS53-209ENST00000570771 TRHP20396 242 aaPredicted RBP10.29□□□□□ -0.76
VPS53-209ENST00000570771 VPS8Q8N3P4 1428 aa10.29□□□□□ -0.76
VPS53-209ENST00000570771 CASKIN1Q8WXD9 1431 aa10.29□□□□□ -0.76
VPS53-209ENST00000570771 EPRSP07814 1512 aaKnown RBP10.28□□□□□ -0.76
VPS53-209ENST00000570771 FMN1Q68DA7 1419 aa10.28□□□□□ -0.76
VPS53-209ENST00000570771 FYCO1Q9BQS8 1478 aa10.28□□□□□ -0.76
VPS53-209ENST00000570771 HECW1Q76N89 1606 aa10.26□□□□□ -0.77
VPS53-209ENST00000570771 ASXL2Q76L83 1435 aa10.26□□□□□ -0.77
VPS53-209ENST00000570771 MAPKBP1O60336 1514 aa10.26□□□□□ -0.77
VPS53-209ENST00000570771 APLP2Q06481 763 aa10.25□□□□□ -0.77
VPS53-209ENST00000570771 DIP2BQ9P265 1576 aa10.23□□□□□ -0.77
VPS53-209ENST00000570771 KIF14Q15058 1648 aa10.22□□□□□ -0.77
VPS53-209ENST00000570771 WDR7Q9Y4E6 1490 aa10.22□□□□□ -0.77
VPS53-209ENST00000570771 CFAP43Q8NDM7 1665 aa10.22□□□□□ -0.77
VPS53-209ENST00000570771 ATP1B4Q9UN42 357 aaPredicted RBP10.21□□□□□ -0.77
VPS53-209ENST00000570771 TIAM1Q13009 1591 aa10.2□□□□□ -0.78
VPS53-209ENST00000570771 ABCC10Q5T3U5 1492 aa10.2□□□□□ -0.78
VPS53-209ENST00000570771 KANK4Q5T7N3 995 aaPredicted RBP10.2□□□□□ -0.78
VPS53-209ENST00000570771 TTC37Q6PGP7 1564 aa10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms