RNA–Protein interactions for RNA: ENST00000569422.1

LINC00558-201, long intergenic non-protein coding RNA 558, humanhuman

TSL 1 (best) BASIC

Gene LINC00558, Length 3,163 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00558-201ENST00000569422 MIER1Q8N108 512 aa12.87□□□□□ -0.35
LINC00558-201ENST00000569422 CENPBP07199 599 aaPredicted RBP12.86□□□□□ -0.35
LINC00558-201ENST00000569422 RTN4Q9NQC3 1192 aaKnown RBP12.85□□□□□ -0.35
LINC00558-201ENST00000569422 CCNB3Q8WWL7 1395 aa12.84□□□□□ -0.35
LINC00558-201ENST00000569422 DHX57Q6P158 1386 aaKnown RBP12.83□□□□□ -0.36
LINC00558-201ENST00000569422 GTF3C3Q9Y5Q9 886 aa12.82□□□□□ -0.36
LINC00558-201ENST00000569422 TDRD9Q8NDG6 1382 aaKnown RBP12.82□□□□□ -0.36
LINC00558-201ENST00000569422 FHOD3Q2V2M9 1422 aa12.8□□□□□ -0.36
LINC00558-201ENST00000569422 POLA1P09884 1462 aaPredicted RBP12.79□□□□□ -0.36
LINC00558-201ENST00000569422 TOPBP1Q92547 1522 aa12.78□□□□□ -0.36
LINC00558-201ENST00000569422 EIF5BO60841 1220 aaKnown RBP12.77□□□□□ -0.36
LINC00558-201ENST00000569422 RRBP1Q9P2E9 1410 aaKnown RBP12.77□□□□□ -0.37
LINC00558-201ENST00000569422 PHLDB1Q86UU1 1377 aa12.75□□□□□ -0.37
LINC00558-201ENST00000569422 ARID3CA6NKF2 412 aa12.74□□□□□ -0.37
LINC00558-201ENST00000569422 RAB3GAP2Q9H2M9 1393 aa12.74□□□□□ -0.37
LINC00558-201ENST00000569422 PRDM2Q13029 1718 aa12.72□□□□□ -0.37
LINC00558-201ENST00000569422 SIN3AQ96ST3 1273 aa12.72□□□□□ -0.37
LINC00558-201ENST00000569422 DNMBPQ6XZF7 1577 aa12.72□□□□□ -0.37
LINC00558-201ENST00000569422 FHAD1B1AJZ9 1412 aa12.71□□□□□ -0.38
LINC00558-201ENST00000569422 LRRC9Q6ZRR7 1453 aa12.71□□□□□ -0.38
LINC00558-201ENST00000569422 ABCA10Q8WWZ4 1543 aa12.7□□□□□ -0.38
LINC00558-201ENST00000569422 CLSPNQ9HAW4 1339 aa12.7□□□□□ -0.38
LINC00558-201ENST00000569422 TIAM1Q13009 1591 aa12.69□□□□□ -0.38
LINC00558-201ENST00000569422 URB2Q14146 1524 aaKnown RBP12.69□□□□□ -0.38
LINC00558-201ENST00000569422 BCL11AQ9H165 835 aa12.69□□□□□ -0.38
LINC00558-201ENST00000569422 PDS5BQ9NTI5 1447 aa12.66□□□□□ -0.38
LINC00558-201ENST00000569422 PCF11O94913 1555 aaKnown RBP12.66□□□□□ -0.38
LINC00558-201ENST00000569422 HIRIP3Q9BW71 556 aaPredicted RBP12.65□□□□□ -0.38
LINC00558-201ENST00000569422 SETD5Q9C0A6 1442 aa12.65□□□□□ -0.38
LINC00558-201ENST00000569422 ARXQ96QS3 562 aa12.65□□□□□ -0.38
LINC00558-201ENST00000569422 MTUS2Q5JR59 1369 aa12.65□□□□□ -0.38
LINC00558-201ENST00000569422 GAPVD1Q14C86 1478 aa12.64□□□□□ -0.39
LINC00558-201ENST00000569422 CHIC2Q9UKJ5 165 aa12.61□□□□□ -0.39
LINC00558-201ENST00000569422 LAMC3Q9Y6N6 1575 aa12.59□□□□□ -0.39
LINC00558-201ENST00000569422 AQRO60306 1485 aaKnown RBP eCLIP12.59□□□□□ -0.39
LINC00558-201ENST00000569422 CASKIN1Q8WXD9 1431 aa12.59□□□□□ -0.39
LINC00558-201ENST00000569422 FMN1Q68DA7 1419 aa12.59□□□□□ -0.39
LINC00558-201ENST00000569422 MAP3K1Q13233 1512 aa12.57□□□□□ -0.4
LINC00558-201ENST00000569422 DDX10Q13206 875 aaKnown RBP12.57□□□□□ -0.4
LINC00558-201ENST00000569422 FYCO1Q9BQS8 1478 aa12.56□□□□□ -0.4
LINC00558-201ENST00000569422 RRP7BPQ9NSQ0 103 aa12.56□□□□□ -0.4
LINC00558-201ENST00000569422 MAPKBP1O60336 1514 aa12.55□□□□□ -0.4
LINC00558-201ENST00000569422 FBLN2P98095 1184 aa12.55□□□□□ -0.4
LINC00558-201ENST00000569422 KCNH8Q96L42 1107 aa12.55□□□□□ -0.4
LINC00558-201ENST00000569422 TIMELESSQ9UNS1 1208 aa12.54□□□□□ -0.4
LINC00558-201ENST00000569422 CUL7Q14999 1698 aa12.54□□□□□ -0.4
LINC00558-201ENST00000569422 EFCAB5A4FU69 1503 aa12.54□□□□□ -0.4
LINC00558-201ENST00000569422 FGD6Q6ZV73 1430 aa12.53□□□□□ -0.4
LINC00558-201ENST00000569422 TRIM52Q96A61 297 aa12.52□□□□□ -0.41
LINC00558-201ENST00000569422 KIF21AQ7Z4S6 1674 aa12.51□□□□□ -0.41
LINC00558-201ENST00000569422 AEBP2Q6ZN18 517 aaPredicted RBP12.51□□□□□ -0.41
LINC00558-201ENST00000569422 SNAPC4Q5SXM2 1469 aa12.5□□□□□ -0.41
LINC00558-201ENST00000569422 PTPRKQ15262 1439 aa12.5□□□□□ -0.41
LINC00558-201ENST00000569422 CFAP43Q8NDM7 1665 aa12.49□□□□□ -0.41
LINC00558-201ENST00000569422 PLEKHG5O94827 1062 aa12.49□□□□□ -0.41
LINC00558-201ENST00000569422 CTTNBP2Q8WZ74 1663 aa12.48□□□□□ -0.41
LINC00558-201ENST00000569422 NCOA2Q15596 1464 aa12.48□□□□□ -0.41
LINC00558-201ENST00000569422 ABCA5Q8WWZ7 1642 aa12.48□□□□□ -0.41
LINC00558-201ENST00000569422 TONSLQ96HA7 1378 aa12.47□□□□□ -0.41
LINC00558-201ENST00000569422 PPP1R15AO75807 674 aaPredicted RBP12.47□□□□□ -0.41
LINC00558-201ENST00000569422 WDR97A6NE52 1622 aa12.47□□□□□ -0.41
LINC00558-201ENST00000569422 ZNF608Q9ULD9 1512 aaPredicted RBP12.46□□□□□ -0.41
LINC00558-201ENST00000569422 FOXD1Q16676 465 aa12.45□□□□□ -0.42
LINC00558-201ENST00000569422 MYOM3Q5VTT5 1437 aa12.45□□□□□ -0.42
LINC00558-201ENST00000569422 CCDC18Q5T9S5 1454 aa12.44□□□□□ -0.42
LINC00558-201ENST00000569422 KLHL34Q8N239 644 aa12.44□□□□□ -0.42
LINC00558-201ENST00000569422 GRIN2BQ13224 1484 aa12.43□□□□□ -0.42
LINC00558-201ENST00000569422 CHMP7Q8WUX9 453 aaPredicted RBP12.42□□□□□ -0.42
LINC00558-201ENST00000569422 TARBP1Q13395 1621 aaKnown RBP12.42□□□□□ -0.42
LINC00558-201ENST00000569422 MRC2Q9UBG0 1479 aa12.42□□□□□ -0.42
LINC00558-201ENST00000569422 CDK13Q14004 1512 aaKnown RBP12.41□□□□□ -0.42
LINC00558-201ENST00000569422 ZNF777Q9ULD5 760 aaPredicted RBP12.41□□□□□ -0.42
LINC00558-201ENST00000569422 SAMD9Q5K651 1589 aa12.41□□□□□ -0.42
LINC00558-201ENST00000569422 ZNF644Q9H582 1327 aaPredicted RBP12.41□□□□□ -0.42
LINC00558-201ENST00000569422 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.4□□□□□ -0.42
LINC00558-201ENST00000569422 MAGI3Q5TCQ9 1506 aa12.4□□□□□ -0.42
LINC00558-201ENST00000569422 NAIPQ13075 1403 aa12.4□□□□□ -0.43
LINC00558-201ENST00000569422 ERCC6Q03468 1493 aa12.39□□□□□ -0.43
LINC00558-201ENST00000569422 HFM1A2PYH4 1435 aa12.39□□□□□ -0.43
LINC00558-201ENST00000569422 UACAQ9BZF9 1416 aa12.37□□□□□ -0.43
LINC00558-201ENST00000569422 EPRSP07814 1512 aaKnown RBP12.37□□□□□ -0.43
LINC00558-201ENST00000569422 IQGAP2Q13576 1575 aa12.37□□□□□ -0.43
LINC00558-201ENST00000569422 LRRIQ1Q96JM4 1722 aa12.36□□□□□ -0.43
LINC00558-201ENST00000569422 ANP32CO43423 234 aa12.36□□□□□ -0.43
LINC00558-201ENST00000569422 EHBP1L1Q8N3D4 1523 aa12.36□□□□□ -0.43
LINC00558-201ENST00000569422 AMER1Q5JTC6 1135 aaPredicted RBP12.35□□□□□ -0.43
LINC00558-201ENST00000569422 SUPT6HQ7KZ85 1726 aaKnown RBP12.34□□□□□ -0.43
LINC00558-201ENST00000569422 BCANQ96GW7 911 aa12.34□□□□□ -0.43
LINC00558-201ENST00000569422 MPHOSPH9Q99550 1183 aa12.34□□□□□ -0.43
LINC00558-201ENST00000569422 PTPN23Q9H3S7 1636 aa12.34□□□□□ -0.43
LINC00558-201ENST00000569422 CDK11AQ9UQ88 783 aaPredicted RBP12.33□□□□□ -0.44
LINC00558-201ENST00000569422 PBRM1Q86U86 1689 aa12.33□□□□□ -0.44
LINC00558-201ENST00000569422 ADAMTS12P58397 1594 aa12.33□□□□□ -0.44
LINC00558-201ENST00000569422 IFT140Q96RY7 1462 aa12.33□□□□□ -0.44
LINC00558-201ENST00000569422 UGGT2Q9NYU1 1516 aa12.33□□□□□ -0.44
LINC00558-201ENST00000569422 SUPT16HQ9Y5B9 1047 aaKnown RBP12.32□□□□□ -0.44
LINC00558-201ENST00000569422 CNGB1Q14028 1251 aaPredicted RBP12.32□□□□□ -0.44
LINC00558-201ENST00000569422 THOC2Q8NI27 1593 aaKnown RBP12.32□□□□□ -0.44
LINC00558-201ENST00000569422 CFDP1Q9UEE9 299 aaPredicted RBP12.31□□□□□ -0.44
LINC00558-201ENST00000569422 HECW1Q76N89 1606 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 95.8 ms