RNA–Protein interactions for RNA: ENST00000565634.5

UBFD1-204, Transcript of ubiquitin family domain containing 1, humanhuman

TSL 2

Gene UBFD1, Length 724 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBFD1-204ENST00000565634 C19orf67A6NJJ6 358 aa12.12□□□□□ -0.47
UBFD1-204ENST00000565634 BAZ1AQ9NRL2 1556 aaPredicted RBP12.09□□□□□ -0.47
UBFD1-204ENST00000565634 RIMBP3CA6NJZ7 1639 aa12.04□□□□□ -0.48
UBFD1-204ENST00000565634 RIMBP3BA6NNM3 1639 aa12.04□□□□□ -0.48
UBFD1-204ENST00000565634 RIMBP3Q9UFD9 1639 aa12.04□□□□□ -0.48
UBFD1-204ENST00000565634 LAMC3Q9Y6N6 1575 aa12.03□□□□□ -0.48
UBFD1-204ENST00000565634 SPDYE4A6NLX3 237 aa12.02□□□□□ -0.49
UBFD1-204ENST00000565634 BAZ1BQ9UIG0 1483 aaKnown RBP12.02□□□□□ -0.49
UBFD1-204ENST00000565634 HMGXB3Q12766 1538 aa12.01□□□□□ -0.49
UBFD1-204ENST00000565634 CYB5RLQ6IPT4 315 aa12.01□□□□□ -0.49
UBFD1-204ENST00000565634 SMARCA4P51532 1647 aa12□□□□□ -0.49
UBFD1-204ENST00000565634 PDS5BQ9NTI5 1447 aa12□□□□□ -0.49
UBFD1-204ENST00000565634 FARP1Q9Y4F1 1045 aaPredicted RBP11.97□□□□□ -0.49
UBFD1-204ENST00000565634 MRC2Q9UBG0 1479 aa11.95□□□□□ -0.5
UBFD1-204ENST00000565634 GABBR2O75899 941 aa11.94□□□□□ -0.5
UBFD1-204ENST00000565634 CREBZFQ9NS37 354 aa11.91□□□□□ -0.5
UBFD1-204ENST00000565634 WDR62O43379 1518 aa11.91□□□□□ -0.5
UBFD1-204ENST00000565634 STAG3Q9UJ98 1225 aa11.9□□□□□ -0.5
UBFD1-204ENST00000565634 ARHGEF11O15085 1522 aa11.88□□□□□ -0.51
UBFD1-204ENST00000565634 CD44P16070 742 aaKnown RBP11.88□□□□□ -0.51
UBFD1-204ENST00000565634 CADPSQ9ULU8 1353 aa11.88□□□□□ -0.51
UBFD1-204ENST00000565634 MROH2BQ7Z745 1585 aa11.81□□□□□ -0.52
UBFD1-204ENST00000565634 CEP164Q9UPV0 1460 aa11.8□□□□□ -0.52
UBFD1-204ENST00000565634 FANCD2Q9BXW9 1451 aa11.77□□□□□ -0.52
UBFD1-204ENST00000565634 PEG3Q9GZU2 1588 aa11.76□□□□□ -0.53
UBFD1-204ENST00000565634 PROM2Q8N271 834 aa11.76□□□□□ -0.53
UBFD1-204ENST00000565634 ZNF608Q9ULD9 1512 aaPredicted RBP11.76□□□□□ -0.53
UBFD1-204ENST00000565634 URB2Q14146 1524 aaKnown RBP11.75□□□□□ -0.53
UBFD1-204ENST00000565634 ARAP1Q96P48 1450 aa11.74□□□□□ -0.53
UBFD1-204ENST00000565634 POTEIP0CG38 1075 aa11.73□□□□□ -0.53
UBFD1-204ENST00000565634 MNX1P50219 401 aaPredicted RBP11.73□□□□□ -0.53
UBFD1-204ENST00000565634 ILDR1Q86SU0 546 aaPredicted RBP11.73□□□□□ -0.53
UBFD1-204ENST00000565634 ZRANB1Q9UGI0 708 aa11.72□□□□□ -0.53
UBFD1-204ENST00000565634 ZNF579Q8NAF0 562 aaKnown RBP11.7□□□□□ -0.54
UBFD1-204ENST00000565634 WIZO95785 1651 aa11.7□□□□□ -0.54
UBFD1-204ENST00000565634 CHD1O14646 1710 aa11.69□□□□□ -0.54
UBFD1-204ENST00000565634 CLCN6P51797 869 aa11.66□□□□□ -0.54
UBFD1-204ENST00000565634 LHX8Q68G74 356 aa11.62□□□□□ -0.55
UBFD1-204ENST00000565634 NPM1P06748 294 aaKnown RBP eCLIP11.61□□□□□ -0.55
UBFD1-204ENST00000565634 AQRO60306 1485 aaKnown RBP eCLIP11.59□□□□□ -0.552e-6■■■■■ 45.3
UBFD1-204ENST00000565634 GALR2O43603 387 aaPredicted RBP11.59□□□□□ -0.55
UBFD1-204ENST00000565634 PHF12Q96QT6 1004 aa11.59□□□□□ -0.55
UBFD1-204ENST00000565634 CFTRP13569 1480 aa11.58□□□□□ -0.56
UBFD1-204ENST00000565634 EIF4G3O43432 1585 aaKnown RBP11.56□□□□□ -0.56
UBFD1-204ENST00000565634 DCBLD2Q96PD2 775 aa11.56□□□□□ -0.56
UBFD1-204ENST00000565634 PAK3O75914 559 aaPredicted RBP11.55□□□□□ -0.56
UBFD1-204ENST00000565634 IFT140Q96RY7 1462 aa11.55□□□□□ -0.56
UBFD1-204ENST00000565634 RSF1Q96T23 1441 aaPredicted RBP11.49□□□□□ -0.57
UBFD1-204ENST00000565634 TOPBP1Q92547 1522 aa11.49□□□□□ -0.57
UBFD1-204ENST00000565634 MIER1Q8N108 512 aa11.47□□□□□ -0.57
UBFD1-204ENST00000565634 TSPYL2Q9H2G4 693 aaPredicted RBP11.46□□□□□ -0.57
UBFD1-204ENST00000565634 PRDM2Q13029 1718 aa11.46□□□□□ -0.58
UBFD1-204ENST00000565634 TDRD9Q8NDG6 1382 aaKnown RBP11.44□□□□□ -0.58
UBFD1-204ENST00000565634 KDM4FA0A1W2PPD8 638 aa11.44□□□□□ -0.58
UBFD1-204ENST00000565634 CHMP7Q8WUX9 453 aaPredicted RBP11.44□□□□□ -0.58
UBFD1-204ENST00000565634 FKBP8Q14318 412 aa11.43□□□□□ -0.58
UBFD1-204ENST00000565634 MS4A3Q96HJ5 214 aa11.42□□□□□ -0.58
UBFD1-204ENST00000565634 RAD54L2Q9Y4B4 1467 aa11.42□□□□□ -0.58
UBFD1-204ENST00000565634 TARBP1Q13395 1621 aaKnown RBP11.42□□□□□ -0.58
UBFD1-204ENST00000565634 PELP1Q8IZL8 1130 aaKnown RBP11.41□□□□□ -0.58
UBFD1-204ENST00000565634 CCDC61Q9Y6R9 512 aa11.41□□□□□ -0.58
UBFD1-204ENST00000565634 CLASP1Q7Z460 1538 aa11.4□□□□□ -0.59
UBFD1-204ENST00000565634 GAPVD1Q14C86 1478 aa11.38□□□□□ -0.59
UBFD1-204ENST00000565634 RASEFQ8IZ41 740 aa11.38□□□□□ -0.59
UBFD1-204ENST00000565634 KIF13AQ9H1H9 1805 aa11.37□□□□□ -0.59
UBFD1-204ENST00000565634 SNAPC4Q5SXM2 1469 aa11.37□□□□□ -0.59
UBFD1-204ENST00000565634 POTEB2H3BUK9 544 aa11.36□□□□□ -0.59
UBFD1-204ENST00000565634 ERCC6L2Q5T890 1561 aa11.36□□□□□ -0.59
UBFD1-204ENST00000565634 PLEKHG5O94827 1062 aa11.35□□□□□ -0.59
UBFD1-204ENST00000565634 KIF12Q96FN5 646 aa11.35□□□□□ -0.59
UBFD1-204ENST00000565634 PLCD3Q8N3E9 789 aa11.34□□□□□ -0.59
UBFD1-204ENST00000565634 DNMBPQ6XZF7 1577 aa11.33□□□□□ -0.6
UBFD1-204ENST00000565634 ATMINO43313 823 aaPredicted RBP11.33□□□□□ -0.6
UBFD1-204ENST00000565634 ASTLQ6HA08 431 aaPredicted RBP11.33□□□□□ -0.6
UBFD1-204ENST00000565634 TOP2AP11388 1531 aaKnown RBP11.33□□□□□ -0.6
UBFD1-204ENST00000565634 SYNJ1O43426 1573 aa11.33□□□□□ -0.6
UBFD1-204ENST00000565634 CCDC88BA6NC98 1476 aa11.32□□□□□ -0.6
UBFD1-204ENST00000565634 POLA1P09884 1462 aaPredicted RBP11.32□□□□□ -0.6
UBFD1-204ENST00000565634 SOGA1O94964 1423 aa11.31□□□□□ -0.6
UBFD1-204ENST00000565634 TSPOAP1O95153 1857 aa11.29□□□□□ -0.6
UBFD1-204ENST00000565634 ABCC8Q09428 1581 aa11.28□□□□□ -0.6
UBFD1-204ENST00000565634 MAP3K13O43283 966 aa11.28□□□□□ -0.6
UBFD1-204ENST00000565634 NUBP1P53384 320 aa11.28□□□□□ -0.6
UBFD1-204ENST00000565634 FAM69CQ0P6D2 419 aa11.28□□□□□ -0.6
UBFD1-204ENST00000565634 OTUD5Q96G74 571 aa11.28□□□□□ -0.6
UBFD1-204ENST00000565634 TRPC6Q9Y210 931 aa11.28□□□□□ -0.6
UBFD1-204ENST00000565634 ATN1P54259 1190 aaPredicted RBP11.25□□□□□ -0.61
UBFD1-204ENST00000565634 METRNQ9UJH8 293 aa11.23□□□□□ -0.61
UBFD1-204ENST00000565634 C7P10643 843 aa11.22□□□□□ -0.61
UBFD1-204ENST00000565634 BMP2KQ9NSY1 1161 aaPredicted RBP11.22□□□□□ -0.61
UBFD1-204ENST00000565634 SYNJ2O15056 1496 aa11.21□□□□□ -0.61
UBFD1-204ENST00000565634 POTEJP0CG39 1038 aa11.21□□□□□ -0.61
UBFD1-204ENST00000565634 SLC39A7Q92504 469 aa11.21□□□□□ -0.61
UBFD1-204ENST00000565634 ZBTB47Q9UFB7 747 aaPredicted RBP11.21□□□□□ -0.61
UBFD1-204ENST00000565634 FGD5Q6ZNL6 1462 aa11.19□□□□□ -0.62
UBFD1-204ENST00000565634 MAGI1Q96QZ7 1491 aaPredicted RBP11.19□□□□□ -0.62
UBFD1-204ENST00000565634 PBRM1Q86U86 1689 aa11.19□□□□□ -0.62
UBFD1-204ENST00000565634 GRIN2BQ13224 1484 aa11.19□□□□□ -0.62
UBFD1-204ENST00000565634 KDM6BO15054 1643 aa11.17□□□□□ -0.62
UBFD1-204ENST00000565634 CEP170Q5SW79 1584 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms