RNA–Protein interactions for RNA: ENST00000565634.5

UBFD1-204, Transcript of ubiquitin family domain containing 1, humanhuman

TSL 2

Gene UBFD1, Length 724 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBFD1-204ENST00000565634 AEBP2Q6ZN18 517 aaPredicted RBP23.3■■□□□ 1.32
UBFD1-204ENST00000565634 CHIC1Q5VXU3 224 aa22.07■■□□□ 1.12
UBFD1-204ENST00000565634 SENP3Q9H4L4 574 aaPredicted RBP19.77■□□□□ 0.76
UBFD1-204ENST00000565634 PHF23Q9BUL5 403 aaPredicted RBP19.58■□□□□ 0.72
UBFD1-204ENST00000565634 FOXD1Q16676 465 aa18.51■□□□□ 0.55
UBFD1-204ENST00000565634 PLPPR3Q6T4P5 718 aa17.59■□□□□ 0.41
UBFD1-204ENST00000565634 PPP6R1Q9UPN7 881 aa17.35■□□□□ 0.37
UBFD1-204ENST00000565634 ADRA2BP18089 450 aa17.27■□□□□ 0.36
UBFD1-204ENST00000565634 PIAS4Q8N2W9 510 aaPredicted RBP17.24■□□□□ 0.35
UBFD1-204ENST00000565634 MSH5O43196 834 aa17.22■□□□□ 0.35
UBFD1-204ENST00000565634 POTEDQ86YR6 584 aa16.88■□□□□ 0.29
UBFD1-204ENST00000565634 MAPK8IP2Q13387 824 aaPredicted RBP15.88■□□□□ 0.13
UBFD1-204ENST00000565634 DMRT2Q9Y5R5 561 aa15.72■□□□□ 0.11
UBFD1-204ENST00000565634 SCAF1Q9H7N4 1312 aaKnown RBP15.68■□□□□ 0.1
UBFD1-204ENST00000565634 PPP4R3CPQ6ZMV5 832 aa15.46■□□□□ 0.07
UBFD1-204ENST00000565634 NISCHQ9Y2I1 1504 aa15.22■□□□□ 0.03
UBFD1-204ENST00000565634 HOXD11P31277 338 aaPredicted RBP15.14■□□□□ 0.01
UBFD1-204ENST00000565634 CNKSR2Q8WXI2 1034 aa15.14■□□□□ 0.01
UBFD1-204ENST00000565634 DCAF8L1A6NGE4 600 aa15.04■□□□□ -0
UBFD1-204ENST00000565634 RNF216Q9NWF9 866 aaPredicted RBP15.01□□□□□ -0.01
UBFD1-204ENST00000565634 CACNB1Q02641 598 aaPredicted RBP14.8□□□□□ -0.04
UBFD1-204ENST00000565634 NCBP3Q53F19 620 aaKnown RBP14.8□□□□□ -0.04
UBFD1-204ENST00000565634 RNF39Q9H2S5 420 aa14.75□□□□□ -0.05
UBFD1-204ENST00000565634 NPM3O75607 178 aaKnown RBP14.67□□□□□ -0.06
UBFD1-204ENST00000565634 ABCC9O60706 1549 aa14.65□□□□□ -0.06
UBFD1-204ENST00000565634 DNAJC5BQ9UF47 199 aa14.58□□□□□ -0.08
UBFD1-204ENST00000565634 C1QBPQ07021 282 aaKnown RBP14.5□□□□□ -0.09
UBFD1-204ENST00000565634 KCNA4P22459 653 aa14.41□□□□□ -0.1
UBFD1-204ENST00000565634 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.39□□□□□ -0.11
UBFD1-204ENST00000565634 U3KPZ7 1027 aaPredicted RBP14.14□□□□□ -0.15
UBFD1-204ENST00000565634 SLC4A2P04920 1241 aa14.04□□□□□ -0.16
UBFD1-204ENST00000565634 SPINK5Q9NQ38 1064 aaPredicted RBP13.95□□□□□ -0.18
UBFD1-204ENST00000565634 CAPN15O75808 1086 aa13.87□□□□□ -0.19
UBFD1-204ENST00000565634 DSG3P32926 999 aa13.83□□□□□ -0.2
UBFD1-204ENST00000565634 CCDC180Q9P1Z9 1646 aa13.79□□□□□ -0.2
UBFD1-204ENST00000565634 TRHP20396 242 aaPredicted RBP13.66□□□□□ -0.22
UBFD1-204ENST00000565634 PABPN1Q86U42 306 aaKnown RBP eCLIP13.66□□□□□ -0.22
UBFD1-204ENST00000565634 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.64□□□□□ -0.23
UBFD1-204ENST00000565634 HNRNPUL2Q1KMD3 747 aaKnown RBP13.64□□□□□ -0.23
UBFD1-204ENST00000565634 APLP2Q06481 763 aa13.61□□□□□ -0.23
UBFD1-204ENST00000565634 SAMD1Q6SPF0 538 aaPredicted RBP13.58□□□□□ -0.24
UBFD1-204ENST00000565634 ZNF219Q9P2Y4 722 aaPredicted RBP13.58□□□□□ -0.24
UBFD1-204ENST00000565634 ABCB7O75027 752 aa13.57□□□□□ -0.24
UBFD1-204ENST00000565634 SLC4A1APQ9BWU0 796 aaKnown RBP13.55□□□□□ -0.24
UBFD1-204ENST00000565634 MYCNP04198 464 aaPredicted RBP13.51□□□□□ -0.25
UBFD1-204ENST00000565634 DNAJC5Q9H3Z4 198 aa13.48□□□□□ -0.25
UBFD1-204ENST00000565634 RB1CC1Q8TDY2 1594 aa13.48□□□□□ -0.25
UBFD1-204ENST00000565634 DCAF8L2P0C7V8 631 aa13.46□□□□□ -0.25
UBFD1-204ENST00000565634 FOXD4L1Q9NU39 408 aa13.38□□□□□ -0.27
UBFD1-204ENST00000565634 UNC13AQ9UPW8 1703 aa13.38□□□□□ -0.27
UBFD1-204ENST00000565634 POLA2Q14181 598 aa13.31□□□□□ -0.28
UBFD1-204ENST00000565634 ATF5Q9Y2D1 282 aaPredicted RBP13.3□□□□□ -0.28
UBFD1-204ENST00000565634 ZBTB22O15209 634 aa13.28□□□□□ -0.28
UBFD1-204ENST00000565634 NACADO15069 1562 aa13.2□□□□□ -0.3
UBFD1-204ENST00000565634 POTEHQ6S545 545 aa13.2□□□□□ -0.3
UBFD1-204ENST00000565634 BICRAQ9NZM4 1560 aa13.2□□□□□ -0.3
UBFD1-204ENST00000565634 CECR2Q9BXF3 1484 aa13.16□□□□□ -0.3
UBFD1-204ENST00000565634 CC2D2AQ9P2K1 1620 aa13.13□□□□□ -0.31
UBFD1-204ENST00000565634 RBM42Q9BTD8 480 aaKnown RBP13.1□□□□□ -0.31
UBFD1-204ENST00000565634 ATXN8OSP0DMR3 200 aa12.96□□□□□ -0.33
UBFD1-204ENST00000565634 ZBTB12Q9Y330 459 aaPredicted RBP12.95□□□□□ -0.34
UBFD1-204ENST00000565634 EIF4G1Q04637 1599 aaKnown RBP12.89□□□□□ -0.35
UBFD1-204ENST00000565634 CHRDL2Q6WN34 429 aa12.87□□□□□ -0.35
UBFD1-204ENST00000565634 OSCARQ8IYS5 282 aa12.87□□□□□ -0.35
UBFD1-204ENST00000565634 AKT1S1Q96B36 256 aa12.84□□□□□ -0.35
UBFD1-204ENST00000565634 TRIM41Q8WV44 630 aa12.83□□□□□ -0.36
UBFD1-204ENST00000565634 REM2Q8IYK8 340 aaPredicted RBP12.77□□□□□ -0.37
UBFD1-204ENST00000565634 SCRIBQ14160 1630 aa12.76□□□□□ -0.37
UBFD1-204ENST00000565634 MYO15BQ96JP2 1530 aa12.68□□□□□ -0.38
UBFD1-204ENST00000565634 MKRN4PQ13434 485 aaPredicted RBP12.68□□□□□ -0.38
UBFD1-204ENST00000565634 FBLN2P98095 1184 aa12.66□□□□□ -0.38
UBFD1-204ENST00000565634 CSRNP3Q8WYN3 585 aa12.65□□□□□ -0.38
UBFD1-204ENST00000565634 CUX2O14529 1486 aa12.62□□□□□ -0.39
UBFD1-204ENST00000565634 SHROOM4Q9ULL8 1493 aa12.62□□□□□ -0.39
UBFD1-204ENST00000565634 PITPNM1O00562 1244 aa12.62□□□□□ -0.39
UBFD1-204ENST00000565634 PIP4P2Q8N4L2 257 aa12.6□□□□□ -0.39
UBFD1-204ENST00000565634 ERCC6Q03468 1493 aa12.59□□□□□ -0.39
UBFD1-204ENST00000565634 SPDYE2BA6NHP3 402 aa12.59□□□□□ -0.39
UBFD1-204ENST00000565634 SPDYE6P0CI01 402 aa12.59□□□□□ -0.39
UBFD1-204ENST00000565634 SPDYE2Q495Y8 402 aa12.59□□□□□ -0.39
UBFD1-204ENST00000565634 FXR2P51116 673 aaKnown RBP eCLIP12.52□□□□□ -0.41
UBFD1-204ENST00000565634 ZNF692Q9BU19 519 aaPredicted RBP12.46□□□□□ -0.41
UBFD1-204ENST00000565634 SSUH2Q9Y2M2 353 aa12.46□□□□□ -0.41
UBFD1-204ENST00000565634 EHMT2Q96KQ7 1210 aa12.44□□□□□ -0.42
UBFD1-204ENST00000565634 NESP48681 1621 aa12.44□□□□□ -0.42
UBFD1-204ENST00000565634 ZCCHC6Q5VYS8 1495 aaKnown RBP12.42□□□□□ -0.42
UBFD1-204ENST00000565634 SPDYE1Q8NFV5 336 aaPredicted RBP12.37□□□□□ -0.43
UBFD1-204ENST00000565634 SP7Q8TDD2 431 aaPredicted RBP12.37□□□□□ -0.43
UBFD1-204ENST00000565634 CLEC11AQ9Y240 323 aa12.36□□□□□ -0.43
UBFD1-204ENST00000565634 DCAF1Q9Y4B6 1507 aa12.35□□□□□ -0.43
UBFD1-204ENST00000565634 HAX1O00165 279 aa12.34□□□□□ -0.43
UBFD1-204ENST00000565634 PRKAR2AP13861 404 aaKnown RBP12.29□□□□□ -0.44
UBFD1-204ENST00000565634 EVX2Q03828 476 aa12.28□□□□□ -0.44
UBFD1-204ENST00000565634 THOC2Q8NI27 1593 aaKnown RBP12.26□□□□□ -0.45
UBFD1-204ENST00000565634 SMARCA2P51531 1590 aa12.25□□□□□ -0.45
UBFD1-204ENST00000565634 NCAPD3P42695 1498 aa12.22□□□□□ -0.45
UBFD1-204ENST00000565634 KIF21AQ7Z4S6 1674 aa12.22□□□□□ -0.45
UBFD1-204ENST00000565634 CHADLQ6NUI6 762 aa12.18□□□□□ -0.46
UBFD1-204ENST00000565634 ATAD2BQ9ULI0 1458 aa12.17□□□□□ -0.46
UBFD1-204ENST00000565634 PRR29P0C7W0 189 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms