RNA–Protein interactions for RNA: ENST00000563623.5

ABCA3-203, Transcript of ATP binding cassette subfamily A member 3, humanhuman

TSL 1 (best)

Gene ABCA3, Length 3,649 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA3-203ENST00000563623 ANP32EQ9BTT0 268 aa16.66■□□□□ 0.26
ABCA3-203ENST00000563623 ARHGAP35Q9NRY4 1499 aa16.66■□□□□ 0.26
ABCA3-203ENST00000563623 SETD5Q9C0A6 1442 aa16.66■□□□□ 0.26
ABCA3-203ENST00000563623 CUX2O14529 1486 aa16.65■□□□□ 0.26
ABCA3-203ENST00000563623 CUX1P39880 1505 aa16.63■□□□□ 0.25
ABCA3-203ENST00000563623 CARMIL1Q5VZK9 1371 aa16.6■□□□□ 0.25
ABCA3-203ENST00000563623 IRX6P78412 446 aaPredicted RBP16.6■□□□□ 0.25
ABCA3-203ENST00000563623 TONSLQ96HA7 1378 aa16.59■□□□□ 0.25
ABCA3-203ENST00000563623 PHLDB1Q86UU1 1377 aa16.58■□□□□ 0.24
ABCA3-203ENST00000563623 IGF1RP08069 1367 aa16.56■□□□□ 0.24
ABCA3-203ENST00000563623 BIVM-ERCC5R4GMW8 1640 aa16.55■□□□□ 0.24
ABCA3-203ENST00000563623 HNRNPUQ00839 825 aaKnown RBP eCLIP16.55■□□□□ 0.24
ABCA3-203ENST00000563623 WDR97A6NE52 1622 aa16.54■□□□□ 0.24
ABCA3-203ENST00000563623 PPP1R15AO75807 674 aaPredicted RBP16.54■□□□□ 0.24
ABCA3-203ENST00000563623 CNGB1Q14028 1251 aaPredicted RBP16.54■□□□□ 0.24
ABCA3-203ENST00000563623 RBM19Q9Y4C8 960 aaKnown RBP16.52■□□□□ 0.24
ABCA3-203ENST00000563623 MAPKBP1O60336 1514 aa16.51■□□□□ 0.23
ABCA3-203ENST00000563623 LRRC9Q6ZRR7 1453 aa16.48■□□□□ 0.23
ABCA3-203ENST00000563623 FHOD3Q2V2M9 1422 aa16.48■□□□□ 0.23
ABCA3-203ENST00000563623 CHIC2Q9UKJ5 165 aa16.48■□□□□ 0.23
ABCA3-203ENST00000563623 FHAD1B1AJZ9 1412 aa16.47■□□□□ 0.23
ABCA3-203ENST00000563623 CCER2I3L3R5 266 aa16.46■□□□□ 0.23
ABCA3-203ENST00000563623 TIAM1Q13009 1591 aa16.46■□□□□ 0.23
ABCA3-203ENST00000563623 ARID3CA6NKF2 412 aa16.46■□□□□ 0.23
ABCA3-203ENST00000563623 NCAPD3P42695 1498 aa16.45■□□□□ 0.22
ABCA3-203ENST00000563623 MTUS2Q5JR59 1369 aa16.45■□□□□ 0.22
ABCA3-203ENST00000563623 RRP7BPQ9NSQ0 103 aa16.44■□□□□ 0.22
ABCA3-203ENST00000563623 TIMELESSQ9UNS1 1208 aa16.44■□□□□ 0.22
ABCA3-203ENST00000563623 CFTRP13569 1480 aa16.44■□□□□ 0.22
ABCA3-203ENST00000563623 CDK11AQ9UQ88 783 aaPredicted RBP16.43■□□□□ 0.22
ABCA3-203ENST00000563623 POLR3GLQ9BT43 218 aa16.41■□□□□ 0.22
ABCA3-203ENST00000563623 FGD5Q6ZNL6 1462 aa16.4■□□□□ 0.22
ABCA3-203ENST00000563623 FAM9BQ8IZU0 186 aa16.39■□□□□ 0.21
ABCA3-203ENST00000563623 CADPSQ9ULU8 1353 aa16.36■□□□□ 0.21
ABCA3-203ENST00000563623 HMGXB3Q12766 1538 aa16.34■□□□□ 0.21
ABCA3-203ENST00000563623 HSPA5P11021 654 aaKnown RBP16.33■□□□□ 0.2
ABCA3-203ENST00000563623 PCF11O94913 1555 aaKnown RBP16.31■□□□□ 0.2
ABCA3-203ENST00000563623 RAD54L2Q9Y4B4 1467 aa16.31■□□□□ 0.2
ABCA3-203ENST00000563623 SENP3-EIF4A1A0A087X0R7 540 aa16.31■□□□□ 0.2
ABCA3-203ENST00000563623 CCDC18Q5T9S5 1454 aa16.31■□□□□ 0.2
ABCA3-203ENST00000563623 FOXD1Q16676 465 aa16.3■□□□□ 0.2
ABCA3-203ENST00000563623 EIF4G2P78344 907 aaKnown RBP eCLIP16.3■□□□□ 0.2
ABCA3-203ENST00000563623 MRS2Q9HD23 443 aa16.29■□□□□ 0.2
ABCA3-203ENST00000563623 FGD6Q6ZV73 1430 aa16.28■□□□□ 0.2
ABCA3-203ENST00000563623 MAP3K1Q13233 1512 aa16.28■□□□□ 0.2
ABCA3-203ENST00000563623 ZNF326Q5BKZ1 582 aaKnown RBP16.27■□□□□ 0.19
ABCA3-203ENST00000563623 B4GALNT3Q6L9W6 998 aa16.25■□□□□ 0.19
ABCA3-203ENST00000563623 CCDC184Q52MB2 194 aa16.23■□□□□ 0.19
ABCA3-203ENST00000563623 TDRD9Q8NDG6 1382 aaKnown RBP16.23■□□□□ 0.19
ABCA3-203ENST00000563623 CASKIN1Q8WXD9 1431 aa16.22■□□□□ 0.19
ABCA3-203ENST00000563623 WASHC2AQ641Q2 1341 aa16.22■□□□□ 0.19
ABCA3-203ENST00000563623 MSH5O43196 834 aa16.22■□□□□ 0.19
ABCA3-203ENST00000563623 FMN1Q68DA7 1419 aa16.22■□□□□ 0.19
ABCA3-203ENST00000563623 FANCD2Q9BXW9 1451 aa16.22■□□□□ 0.19
ABCA3-203ENST00000563623 UACAQ9BZF9 1416 aa16.21■□□□□ 0.19
ABCA3-203ENST00000563623 FYCO1Q9BQS8 1478 aa16.2■□□□□ 0.18
ABCA3-203ENST00000563623 PTPRKQ15262 1439 aa16.2■□□□□ 0.18
ABCA3-203ENST00000563623 L3MBTL2Q969R5 705 aa16.19■□□□□ 0.18
ABCA3-203ENST00000563623 PPP4R2Q9NY27 417 aa16.19■□□□□ 0.18
ABCA3-203ENST00000563623 MPHOSPH9Q99550 1183 aa16.16■□□□□ 0.18
ABCA3-203ENST00000563623 ANO8Q9HCE9 1232 aaPredicted RBP16.15■□□□□ 0.18
ABCA3-203ENST00000563623 HFM1A2PYH4 1435 aa16.15■□□□□ 0.18
ABCA3-203ENST00000563623 NAIPQ13075 1403 aa16.15■□□□□ 0.18
ABCA3-203ENST00000563623 AQRO60306 1485 aaKnown RBP eCLIP16.14■□□□□ 0.171e-6■■■■□ 25.9
ABCA3-203ENST00000563623 NCOA2Q15596 1464 aa16.14■□□□□ 0.17
ABCA3-203ENST00000563623 CFAP43Q8NDM7 1665 aa16.13■□□□□ 0.17
ABCA3-203ENST00000563623 MYOM3Q5VTT5 1437 aa16.13■□□□□ 0.17
ABCA3-203ENST00000563623 SLC4A1APQ9BWU0 796 aaKnown RBP16.13■□□□□ 0.17
ABCA3-203ENST00000563623 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.12■□□□□ 0.17
ABCA3-203ENST00000563623 PRKRIP1Q9H875 184 aaPredicted RBP16.12■□□□□ 0.17
ABCA3-203ENST00000563623 C11orf95C9JLR9 678 aaPredicted RBP16.12■□□□□ 0.17
ABCA3-203ENST00000563623 NBR1Q14596 966 aa16.12■□□□□ 0.17
ABCA3-203ENST00000563623 POLA1P09884 1462 aaPredicted RBP16.11■□□□□ 0.17
ABCA3-203ENST00000563623 NESP48681 1621 aa16.1■□□□□ 0.17
ABCA3-203ENST00000563623 ZNF777Q9ULD5 760 aaPredicted RBP16.09■□□□□ 0.17
ABCA3-203ENST00000563623 EFCAB5A4FU69 1503 aa16.09■□□□□ 0.17
ABCA3-203ENST00000563623 PTPN23Q9H3S7 1636 aa16.08■□□□□ 0.16
ABCA3-203ENST00000563623 FANCIQ9NVI1 1328 aa16.08■□□□□ 0.16
ABCA3-203ENST00000563623 CCDC136Q96JN2 1154 aa16.07■□□□□ 0.16
ABCA3-203ENST00000563623 TOPBP1Q92547 1522 aa16.06■□□□□ 0.16
ABCA3-203ENST00000563623 SALL2Q9Y467 1007 aaPredicted RBP16.06■□□□□ 0.16
ABCA3-203ENST00000563623 NBPF8Q3BBV2 869 aa16.05■□□□□ 0.16
ABCA3-203ENST00000563623 CNTLNQ9NXG0 1405 aa16.04■□□□□ 0.16
ABCA3-203ENST00000563623 CCDC7Q96M83 1385 aa16.04■□□□□ 0.16
ABCA3-203ENST00000563623 ABCA10Q8WWZ4 1543 aa16.04■□□□□ 0.16
ABCA3-203ENST00000563623 ERICH6BQ5W0A0 696 aa16.01■□□□□ 0.15
ABCA3-203ENST00000563623 KIF7Q2M1P5 1343 aa16.01■□□□□ 0.15
ABCA3-203ENST00000563623 TMC1Q8TDI8 760 aa16■□□□□ 0.15
ABCA3-203ENST00000563623 DNMBPQ6XZF7 1577 aa16■□□□□ 0.15
ABCA3-203ENST00000563623 ZBED9Q6R2W3 1325 aa16■□□□□ 0.15
ABCA3-203ENST00000563623 ZNF644Q9H582 1327 aaPredicted RBP16■□□□□ 0.15
ABCA3-203ENST00000563623 NPM2Q86SE8 214 aaKnown RBP16■□□□□ 0.15
ABCA3-203ENST00000563623 SNAPC4Q5SXM2 1469 aa16■□□□□ 0.15
ABCA3-203ENST00000563623 KDM2AQ9Y2K7 1162 aa15.99■□□□□ 0.15
ABCA3-203ENST00000563623 GAPVD1Q14C86 1478 aa15.98■□□□□ 0.15
ABCA3-203ENST00000563623 ANP32AP39687 249 aaKnown RBP15.98■□□□□ 0.15
ABCA3-203ENST00000563623 DEKP35659 375 aaKnown RBP15.97■□□□□ 0.15
ABCA3-203ENST00000563623 NOP58Q9Y2X3 529 aaKnown RBP15.97■□□□□ 0.15
ABCA3-203ENST00000563623 PRDM2Q13029 1718 aa15.97■□□□□ 0.15
ABCA3-203ENST00000563623 CC2D2AQ9P2K1 1620 aa15.96■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms