RNA–Protein interactions for RNA: ENST00000563590.2

CCDC187-201, Transcript of coiled-coil domain containing 187, humanhuman

TSL 1 (best)

Gene CCDC187, Length 3,543 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC187-201ENST00000563590 ARAP1Q96P48 1450 aa17.92■□□□□ 0.46
CCDC187-201ENST00000563590 FBLN2P98095 1184 aa17.91■□□□□ 0.46
CCDC187-201ENST00000563590 NBR1Q14596 966 aa17.91■□□□□ 0.46
CCDC187-201ENST00000563590 POLR3GLQ9BT43 218 aa17.89■□□□□ 0.45
CCDC187-201ENST00000563590 RRBP1Q9P2E9 1410 aaKnown RBP17.88■□□□□ 0.45
CCDC187-201ENST00000563590 HMGXB3Q12766 1538 aa17.88■□□□□ 0.45
CCDC187-201ENST00000563590 CCNB3Q8WWL7 1395 aa17.86■□□□□ 0.45
CCDC187-201ENST00000563590 ANP32CO43423 234 aa17.84■□□□□ 0.45
CCDC187-201ENST00000563590 CFTRP13569 1480 aa17.83■□□□□ 0.44
CCDC187-201ENST00000563590 CUX2O14529 1486 aa17.82■□□□□ 0.44
CCDC187-201ENST00000563590 KIF27Q86VH2 1401 aa17.82■□□□□ 0.44
CCDC187-201ENST00000563590 FANCD2Q9BXW9 1451 aa17.82■□□□□ 0.44
CCDC187-201ENST00000563590 RAB3GAP2Q9H2M9 1393 aa17.81■□□□□ 0.44
CCDC187-201ENST00000563590 SENP3-EIF4A1A0A087X0R7 540 aa17.8■□□□□ 0.44
CCDC187-201ENST00000563590 PRXQ9BXM0 1461 aa17.79■□□□□ 0.44
CCDC187-201ENST00000563590 HNRNPUQ00839 825 aaKnown RBP eCLIP17.78■□□□□ 0.44
CCDC187-201ENST00000563590 SIN3AQ96ST3 1273 aa17.78■□□□□ 0.44
CCDC187-201ENST00000563590 TDRD9Q8NDG6 1382 aaKnown RBP17.78■□□□□ 0.44
CCDC187-201ENST00000563590 MAPKBP1O60336 1514 aa17.76■□□□□ 0.43
CCDC187-201ENST00000563590 ERICH3Q5RHP9 1530 aa17.76■□□□□ 0.43
CCDC187-201ENST00000563590 MSH5O43196 834 aa17.76■□□□□ 0.43
CCDC187-201ENST00000563590 TOP2BQ02880 1626 aa17.75■□□□□ 0.43
CCDC187-201ENST00000563590 DEKP35659 375 aaKnown RBP17.75■□□□□ 0.43
CCDC187-201ENST00000563590 PRKCSHP14314 528 aaPredicted RBP17.74■□□□□ 0.43
CCDC187-201ENST00000563590 PDS5BQ9NTI5 1447 aa17.73■□□□□ 0.43
CCDC187-201ENST00000563590 RTN4Q9NQC3 1192 aaKnown RBP17.71■□□□□ 0.43
CCDC187-201ENST00000563590 WDR97A6NE52 1622 aa17.71■□□□□ 0.43
CCDC187-201ENST00000563590 ERCC6Q03468 1493 aa17.71■□□□□ 0.42
CCDC187-201ENST00000563590 PPP1R15AO75807 674 aaPredicted RBP17.71■□□□□ 0.42
CCDC187-201ENST00000563590 CHIC2Q9UKJ5 165 aa17.7■□□□□ 0.42
CCDC187-201ENST00000563590 RAD54L2Q9Y4B4 1467 aa17.69■□□□□ 0.42
CCDC187-201ENST00000563590 RTL5Q5HYW3 569 aaPredicted RBP17.69■□□□□ 0.42
CCDC187-201ENST00000563590 CUX1P39880 1505 aa17.68■□□□□ 0.42
CCDC187-201ENST00000563590 ARHGAP35Q9NRY4 1499 aa17.68■□□□□ 0.42
CCDC187-201ENST00000563590 CARMIL1Q5VZK9 1371 aa17.68■□□□□ 0.42
CCDC187-201ENST00000563590 SETD5Q9C0A6 1442 aa17.66■□□□□ 0.42
CCDC187-201ENST00000563590 FGD5Q6ZNL6 1462 aa17.66■□□□□ 0.42
CCDC187-201ENST00000563590 ZNF326Q5BKZ1 582 aaKnown RBP17.63■□□□□ 0.41
CCDC187-201ENST00000563590 BIVM-ERCC5R4GMW8 1640 aa17.62■□□□□ 0.41
CCDC187-201ENST00000563590 CCER2I3L3R5 266 aa17.62■□□□□ 0.41
CCDC187-201ENST00000563590 B4GALNT3Q6L9W6 998 aa17.6■□□□□ 0.41
CCDC187-201ENST00000563590 CCDC136Q96JN2 1154 aa17.59■□□□□ 0.41
CCDC187-201ENST00000563590 ANO8Q9HCE9 1232 aaPredicted RBP17.59■□□□□ 0.41
CCDC187-201ENST00000563590 IGF1RP08069 1367 aa17.58■□□□□ 0.41
CCDC187-201ENST00000563590 PHLDB1Q86UU1 1377 aa17.57■□□□□ 0.4
CCDC187-201ENST00000563590 NPM2Q86SE8 214 aaKnown RBP17.56■□□□□ 0.4
CCDC187-201ENST00000563590 FAM9BQ8IZU0 186 aa17.56■□□□□ 0.4
CCDC187-201ENST00000563590 CHMP7Q8WUX9 453 aaPredicted RBP17.56■□□□□ 0.4
CCDC187-201ENST00000563590 TIAM1Q13009 1591 aa17.52■□□□□ 0.4
CCDC187-201ENST00000563590 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.52■□□□□ 0.4
CCDC187-201ENST00000563590 RRP7BPQ9NSQ0 103 aa17.51■□□□□ 0.39
CCDC187-201ENST00000563590 TIMELESSQ9UNS1 1208 aa17.51■□□□□ 0.39
CCDC187-201ENST00000563590 LRRC9Q6ZRR7 1453 aa17.5■□□□□ 0.39
CCDC187-201ENST00000563590 TOPBP1Q92547 1522 aa17.49■□□□□ 0.39
CCDC187-201ENST00000563590 EIF5BO60841 1220 aaKnown RBP17.48■□□□□ 0.39
CCDC187-201ENST00000563590 NOP58Q9Y2X3 529 aaKnown RBP17.47■□□□□ 0.39
CCDC187-201ENST00000563590 POLA1P09884 1462 aaPredicted RBP17.47■□□□□ 0.39
CCDC187-201ENST00000563590 ZNF777Q9ULD5 760 aaPredicted RBP17.47■□□□□ 0.39
CCDC187-201ENST00000563590 FANCIQ9NVI1 1328 aa17.46■□□□□ 0.39
CCDC187-201ENST00000563590 ANP32AP39687 249 aaKnown RBP17.46■□□□□ 0.39
CCDC187-201ENST00000563590 AQRO60306 1485 aaKnown RBP eCLIP17.46■□□□□ 0.38
CCDC187-201ENST00000563590 TONSLQ96HA7 1378 aa17.45■□□□□ 0.38
CCDC187-201ENST00000563590 MYT1LQ9UL68 1186 aa17.44■□□□□ 0.38
CCDC187-201ENST00000563590 MAP3K1Q13233 1512 aa17.42■□□□□ 0.38
CCDC187-201ENST00000563590 SALL2Q9Y467 1007 aaPredicted RBP17.42■□□□□ 0.38
CCDC187-201ENST00000563590 ZBTB47Q9UFB7 747 aaPredicted RBP17.41■□□□□ 0.38
CCDC187-201ENST00000563590 FOXD1Q16676 465 aa17.4■□□□□ 0.38
CCDC187-201ENST00000563590 PPP4R2Q9NY27 417 aa17.4■□□□□ 0.38
CCDC187-201ENST00000563590 URB2Q14146 1524 aaKnown RBP17.4■□□□□ 0.38
CCDC187-201ENST00000563590 PAK3O75914 559 aaPredicted RBP17.39■□□□□ 0.37
CCDC187-201ENST00000563590 LAMC3Q9Y6N6 1575 aa17.38■□□□□ 0.37
CCDC187-201ENST00000563590 LAS1LQ9Y4W2 734 aaKnown RBP17.37■□□□□ 0.37
CCDC187-201ENST00000563590 GAPVD1Q14C86 1478 aa17.37■□□□□ 0.37
CCDC187-201ENST00000563590 FHAD1B1AJZ9 1412 aa17.34■□□□□ 0.37
CCDC187-201ENST00000563590 DNMBPQ6XZF7 1577 aa17.34■□□□□ 0.37
CCDC187-201ENST00000563590 IL27Q8NEV9 243 aa17.34■□□□□ 0.37
CCDC187-201ENST00000563590 MRS2Q9HD23 443 aa17.34■□□□□ 0.37
CCDC187-201ENST00000563590 FHOD3Q2V2M9 1422 aa17.33■□□□□ 0.36
CCDC187-201ENST00000563590 PCF11O94913 1555 aaKnown RBP17.32■□□□□ 0.36
CCDC187-201ENST00000563590 CCDC184Q52MB2 194 aa17.3■□□□□ 0.36
CCDC187-201ENST00000563590 CCDC18Q5T9S5 1454 aa17.29■□□□□ 0.36
CCDC187-201ENST00000563590 MRC2Q9UBG0 1479 aa17.28■□□□□ 0.36
CCDC187-201ENST00000563590 WASHC2AQ641Q2 1341 aa17.28■□□□□ 0.36
CCDC187-201ENST00000563590 HSPA5P11021 654 aaKnown RBP17.27■□□□□ 0.35
CCDC187-201ENST00000563590 CFAP43Q8NDM7 1665 aa17.27■□□□□ 0.35
CCDC187-201ENST00000563590 MTUS2Q5JR59 1369 aa17.26■□□□□ 0.35
CCDC187-201ENST00000563590 UACAQ9BZF9 1416 aa17.24■□□□□ 0.35
CCDC187-201ENST00000563590 NEFMP07197 916 aa17.24■□□□□ 0.35
CCDC187-201ENST00000563590 ERICH6BQ5W0A0 696 aa17.24■□□□□ 0.35
CCDC187-201ENST00000563590 PTPRKQ15262 1439 aa17.24■□□□□ 0.35
CCDC187-201ENST00000563590 FGD6Q6ZV73 1430 aa17.24■□□□□ 0.35
CCDC187-201ENST00000563590 ABCA10Q8WWZ4 1543 aa17.23■□□□□ 0.35
CCDC187-201ENST00000563590 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.22■□□□□ 0.35
CCDC187-201ENST00000563590 ZNF608Q9ULD9 1512 aaPredicted RBP17.22■□□□□ 0.35
CCDC187-201ENST00000563590 SENP3Q9H4L4 574 aaPredicted RBP17.21■□□□□ 0.35
CCDC187-201ENST00000563590 DAXXQ9UER7 740 aaPredicted RBP17.21■□□□□ 0.35
CCDC187-201ENST00000563590 KDM2AQ9Y2K7 1162 aa17.21■□□□□ 0.34
CCDC187-201ENST00000563590 HFM1A2PYH4 1435 aa17.19■□□□□ 0.34
CCDC187-201ENST00000563590 KIF21AQ7Z4S6 1674 aa17.19■□□□□ 0.34
CCDC187-201ENST00000563590 FYCO1Q9BQS8 1478 aa17.18■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms