RNA–Protein interactions for RNA: ENST00000563590.2

CCDC187-201, Transcript of coiled-coil domain containing 187, humanhuman

TSL 1 (best)

Gene CCDC187, Length 3,543 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC187-201ENST00000563590 NISCHQ9Y2I1 1504 aa24.37■■□□□ 1.49
CCDC187-201ENST00000563590 DCAF8L2P0C7V8 631 aa22.04■■□□□ 1.12
CCDC187-201ENST00000563590 SHROOM4Q9ULL8 1493 aa21.92■■□□□ 1.1
CCDC187-201ENST00000563590 SUPT5HO00267 1087 aaKnown RBP21.73■■□□□ 1.07
CCDC187-201ENST00000563590 PCGF6Q9BYE7 350 aa21.17■□□□□ 0.98
CCDC187-201ENST00000563590 HRCP23327 699 aa21.11■□□□□ 0.97
CCDC187-201ENST00000563590 PPARGC1BQ86YN6 1023 aaKnown RBP21.09■□□□□ 0.97
CCDC187-201ENST00000563590 EHMT2Q96KQ7 1210 aa20.94■□□□□ 0.94
CCDC187-201ENST00000563590 MYO15BQ96JP2 1530 aa20.84■□□□□ 0.93
CCDC187-201ENST00000563590 CHIC1Q5VXU3 224 aa20.78■□□□□ 0.92
CCDC187-201ENST00000563590 CCDC180Q9P1Z9 1646 aa20.57■□□□□ 0.88
CCDC187-201ENST00000563590 ABCC9O60706 1549 aa20.56■□□□□ 0.88
CCDC187-201ENST00000563590 ZCCHC6Q5VYS8 1495 aaKnown RBP20.54■□□□□ 0.88
CCDC187-201ENST00000563590 PELP1Q8IZL8 1130 aaKnown RBP20.47■□□□□ 0.87
CCDC187-201ENST00000563590 FAM9AQ8IZU1 332 aaPredicted RBP20.41■□□□□ 0.86
CCDC187-201ENST00000563590 LOC105371045A0A1W2PR82 267 aa20.33■□□□□ 0.85
CCDC187-201ENST00000563590 DCAF1Q9Y4B6 1507 aa20.28■□□□□ 0.84
CCDC187-201ENST00000563590 TRIM26Q12899 539 aaPredicted RBP20.14■□□□□ 0.81
CCDC187-201ENST00000563590 TTBK1Q5TCY1 1321 aaPredicted RBP20.13■□□□□ 0.81
CCDC187-201ENST00000563590 SCAF1Q9H7N4 1312 aaKnown RBP20.1■□□□□ 0.81
CCDC187-201ENST00000563590 ZEB1P37275 1124 aaPredicted RBP19.88■□□□□ 0.77
CCDC187-201ENST00000563590 PABPN1Q86U42 306 aaKnown RBP eCLIP19.86■□□□□ 0.77
CCDC187-201ENST00000563590 SCRIBQ14160 1630 aa19.81■□□□□ 0.76
CCDC187-201ENST00000563590 TRIM41Q8WV44 630 aa19.75■□□□□ 0.75
CCDC187-201ENST00000563590 GTF3C3Q9Y5Q9 886 aa19.71■□□□□ 0.75
CCDC187-201ENST00000563590 YTHDC1Q96MU7 727 aaKnown RBP19.67■□□□□ 0.74
CCDC187-201ENST00000563590 CENPBP07199 599 aaPredicted RBP19.65■□□□□ 0.74
CCDC187-201ENST00000563590 RANGAP1P46060 587 aaPredicted RBP19.65■□□□□ 0.74
CCDC187-201ENST00000563590 NEUROD1Q13562 356 aa19.64■□□□□ 0.74
CCDC187-201ENST00000563590 MYT1Q01538 1121 aa19.64■□□□□ 0.73
CCDC187-201ENST00000563590 CCER1Q8TC90 406 aaPredicted RBP19.64■□□□□ 0.73
CCDC187-201ENST00000563590 ACIN1Q9UKV3 1341 aaKnown RBP19.61■□□□□ 0.73
CCDC187-201ENST00000563590 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.58■□□□□ 0.73
CCDC187-201ENST00000563590 NACADO15069 1562 aa19.49■□□□□ 0.71
CCDC187-201ENST00000563590 DIEXFQ68CQ4 756 aaKnown RBP19.45■□□□□ 0.7
CCDC187-201ENST00000563590 RSF1Q96T23 1441 aaPredicted RBP19.44■□□□□ 0.7
CCDC187-201ENST00000563590 RB1CC1Q8TDY2 1594 aa19.44■□□□□ 0.7
CCDC187-201ENST00000563590 CECR2Q9BXF3 1484 aa19.27■□□□□ 0.67
CCDC187-201ENST00000563590 UBTFP17480 764 aaKnown RBP19.17■□□□□ 0.66
CCDC187-201ENST00000563590 MROH2BQ7Z745 1585 aa19.01■□□□□ 0.63
CCDC187-201ENST00000563590 HNRNPUL2Q1KMD3 747 aaKnown RBP18.93■□□□□ 0.62
CCDC187-201ENST00000563590 ZNF316A6NFI3 1004 aaPredicted RBP18.9■□□□□ 0.62
CCDC187-201ENST00000563590 MIER1Q8N108 512 aa18.88■□□□□ 0.61
CCDC187-201ENST00000563590 WIZO95785 1651 aa18.84■□□□□ 0.61
CCDC187-201ENST00000563590 BAZ1AQ9NRL2 1556 aaPredicted RBP18.81■□□□□ 0.6
CCDC187-201ENST00000563590 APLP2Q06481 763 aa18.8■□□□□ 0.6
CCDC187-201ENST00000563590 WRNQ14191 1432 aaPredicted RBP eCLIP18.79■□□□□ 0.6
CCDC187-201ENST00000563590 CEP162Q5TB80 1403 aa18.79■□□□□ 0.6
CCDC187-201ENST00000563590 ITGAEP38570 1179 aa18.77■□□□□ 0.6
CCDC187-201ENST00000563590 BCANQ96GW7 911 aa18.76■□□□□ 0.59
CCDC187-201ENST00000563590 ATP1B4Q9UN42 357 aaPredicted RBP18.75■□□□□ 0.59
CCDC187-201ENST00000563590 CCDC88BA6NC98 1476 aa18.72■□□□□ 0.59
CCDC187-201ENST00000563590 ABCC8Q09428 1581 aa18.7■□□□□ 0.58
CCDC187-201ENST00000563590 EIF4G1Q04637 1599 aaKnown RBP18.68■□□□□ 0.58
CCDC187-201ENST00000563590 SOGA1O94964 1423 aa18.66■□□□□ 0.58
CCDC187-201ENST00000563590 TNIKQ9UKE5 1360 aa18.65■□□□□ 0.58
CCDC187-201ENST00000563590 BCL11AQ9H165 835 aa18.63■□□□□ 0.57
CCDC187-201ENST00000563590 BICRAQ9NZM4 1560 aa18.62■□□□□ 0.57
CCDC187-201ENST00000563590 UNC13AQ9UPW8 1703 aa18.6■□□□□ 0.57
CCDC187-201ENST00000563590 SMARCA4P51532 1647 aa18.59■□□□□ 0.57
CCDC187-201ENST00000563590 CSRNP3Q8WYN3 585 aa18.59■□□□□ 0.57
CCDC187-201ENST00000563590 BAZ1BQ9UIG0 1483 aaKnown RBP18.58■□□□□ 0.56
CCDC187-201ENST00000563590 RUSC2Q8N2Y8 1516 aa18.55■□□□□ 0.56
CCDC187-201ENST00000563590 ANP32EQ9BTT0 268 aa18.53■□□□□ 0.56
CCDC187-201ENST00000563590 SUPT16HQ9Y5B9 1047 aaKnown RBP18.5■□□□□ 0.55
CCDC187-201ENST00000563590 ATAD2BQ9ULI0 1458 aa18.47■□□□□ 0.55
CCDC187-201ENST00000563590 TOP2AP11388 1531 aaKnown RBP18.45■□□□□ 0.54
CCDC187-201ENST00000563590 GOLGA3Q08378 1498 aa18.44■□□□□ 0.54
CCDC187-201ENST00000563590 EEA1Q15075 1411 aa18.44■□□□□ 0.54
CCDC187-201ENST00000563590 ERICH6Q7L0X2 663 aa18.43■□□□□ 0.54
CCDC187-201ENST00000563590 TSHZ2Q9NRE2 1034 aa18.41■□□□□ 0.54
CCDC187-201ENST00000563590 SMARCA2P51531 1590 aa18.4■□□□□ 0.54
CCDC187-201ENST00000563590 NEFLP07196 543 aa18.36■□□□□ 0.53
CCDC187-201ENST00000563590 FKBP8Q14318 412 aa18.35■□□□□ 0.53
CCDC187-201ENST00000563590 CLIP1P30622 1438 aa18.33■□□□□ 0.52
CCDC187-201ENST00000563590 P3H3Q8IVL6 736 aa18.32■□□□□ 0.52
CCDC187-201ENST00000563590 CNGB1Q14028 1251 aaPredicted RBP18.26■□□□□ 0.51
CCDC187-201ENST00000563590 CEP164Q9UPV0 1460 aa18.26■□□□□ 0.51
CCDC187-201ENST00000563590 VPS8Q8N3P4 1428 aa18.26■□□□□ 0.51
CCDC187-201ENST00000563590 CLSPNQ9HAW4 1339 aa18.24■□□□□ 0.51
CCDC187-201ENST00000563590 DNAJC5BQ9UF47 199 aa18.23■□□□□ 0.51
CCDC187-201ENST00000563590 DHX57Q6P158 1386 aaKnown RBP18.19■□□□□ 0.5
CCDC187-201ENST00000563590 KCNH8Q96L42 1107 aa18.18■□□□□ 0.5
CCDC187-201ENST00000563590 ARID3CA6NKF2 412 aa18.15■□□□□ 0.5
CCDC187-201ENST00000563590 KIF21BO75037 1637 aa18.15■□□□□ 0.5
CCDC187-201ENST00000563590 RAPGEF2Q9Y4G8 1499 aa18.14■□□□□ 0.49
CCDC187-201ENST00000563590 TRIM52Q96A61 297 aa18.14■□□□□ 0.49
CCDC187-201ENST00000563590 NCAPD3P42695 1498 aa18.13■□□□□ 0.49
CCDC187-201ENST00000563590 SYNJ1O43426 1573 aa18.12■□□□□ 0.49
CCDC187-201ENST00000563590 FAM50AQ14320 339 aaKnown RBP18.11■□□□□ 0.49
CCDC187-201ENST00000563590 HIRIP3Q9BW71 556 aaPredicted RBP18.1■□□□□ 0.49
CCDC187-201ENST00000563590 RBM19Q9Y4C8 960 aaKnown RBP18.08■□□□□ 0.49
CCDC187-201ENST00000563590 DDX10Q13206 875 aaKnown RBP18.07■□□□□ 0.48
CCDC187-201ENST00000563590 IRX6P78412 446 aaPredicted RBP18.06■□□□□ 0.48
CCDC187-201ENST00000563590 KANK4Q5T7N3 995 aaPredicted RBP18.05■□□□□ 0.48
CCDC187-201ENST00000563590 CC2D2AQ9P2K1 1620 aa18.05■□□□□ 0.48
CCDC187-201ENST00000563590 CADPSQ9ULU8 1353 aa18.02■□□□□ 0.48
CCDC187-201ENST00000563590 PEG3Q9GZU2 1588 aa17.95■□□□□ 0.46
CCDC187-201ENST00000563590 NESP48681 1621 aa17.92■□□□□ 0.46
CCDC187-201ENST00000563590 CDK11AQ9UQ88 783 aaPredicted RBP17.92■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms